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Conserved domains on  [gi|1933122523|gb|QPD01028|]
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cytochrome b, partial (mitochondrion) [Ochrilidia sp. Ochr_africa]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 7-274 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 544.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   7 IKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMF 86
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  87 FICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 166
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 167 DNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCLINPYML 246
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260
                  ....*....|....*....|....*...
gi 1933122523 247 GDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAY 268
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 7-274 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 544.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   7 IKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMF 86
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  87 FICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 166
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 167 DNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCLINPYML 246
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260
                  ....*....|....*....|....*...
gi 1933122523 247 GDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAY 268
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-274 7.34e-107

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 315.19  E-value: 7.34e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   7 IKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMF 86
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  87 FICIYLHVGRGIYYGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGF 164
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 165 AVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEK----IPFHPYFTFKDSITFVMmtsILIMLC 239
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFV---FLGVFA 256

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1933122523 240 LINPYM-LGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:COG1290   257 LLAFFFpINPPPNYGPANPLATPAHIQPDWYFLPFY 292
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 8.77e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 8.77e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   5 PLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  85 MFFICIYLHVGRGIYYGSYM--YMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 162
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1933122523 163 GFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 202
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 1.91e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.06  E-value: 1.91e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  14 LVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMFFICIYLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  94 VGRGIYYGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 171
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1933122523 172 NRFFTFHFVLPFMIAAMAAIHLFFLHQTG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 7-274 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 544.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   7 IKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMF 86
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  87 FICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 166
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 167 DNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCLINPYML 246
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260
                  ....*....|....*....|....*...
gi 1933122523 247 GDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAY 268
CYTB MTH00119
cytochrome b; Provisional
 1-274 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 503.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00119    6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00119   86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00119  166 WGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLAL 245

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00119  246 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279
CYTB MTH00191
cytochrome b; Provisional
 1-274 5.06e-180

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 499.44  E-value: 5.06e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00191    2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00191   82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAY 275
CYTB MTH00131
cytochrome b; Provisional
 1-274 3.88e-178

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 495.33  E-value: 3.88e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00131    5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00131   85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00131  165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00131  245 FSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 278
CYTB MTH00100
cytochrome b; Provisional
 1-274 4.22e-178

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 495.31  E-value: 4.22e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00100    5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00100   85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00100  165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00100  245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAY 278
CYTB MTH00074
cytochrome b; Provisional
 1-274 4.53e-178

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 495.36  E-value: 4.53e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00074    6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00074   86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00074  166 WGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSL 245

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00074  246 FSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAY 279
CYTB MTH00145
cytochrome b; Provisional
 1-274 2.41e-175

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 488.26  E-value: 2.41e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00145    6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00145   86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00145  166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00145  246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAY 279
CYTB MTH00016
cytochrome b; Validated
 1-274 5.24e-166

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 464.54  E-value: 5.24e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00016    6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00016   86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00016  166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00016  246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAY 279
CYTB MTH00034
cytochrome b; Validated
 1-274 2.66e-162

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 455.32  E-value: 2.66e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00034    5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00034   85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00034  165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00034  245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAY 278
CYTB MTH00224
cytochrome b; Provisional
 1-274 8.68e-147

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 416.24  E-value: 8.68e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00224    6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00224   86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00224  166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00224  246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMY 279
CYTB MTH00022
cytochrome b; Validated
 1-274 9.75e-140

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 398.30  E-value: 9.75e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00022    4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00022   84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00022  164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00022  244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAY 277
CYTB MTH00053
cytochrome b; Provisional
 1-274 4.25e-136

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 389.07  E-value: 4.25e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   1 RLSHPLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHA 80
Cdd:MTH00053    6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  81 NGASMFFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 160
Cdd:MTH00053   86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 161 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:MTH00053  166 WGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVF 245

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933122523 241 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00053  246 LFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAY 279
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-274 7.34e-107

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 315.19  E-value: 7.34e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   7 IKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMF 86
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  87 FICIYLHVGRGIYYGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGF 164
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 165 AVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEK----IPFHPYFTFKDSITFVMmtsILIMLC 239
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFV---FLGVFA 256

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1933122523 240 LINPYM-LGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:COG1290   257 LLAFFFpINPPPNYGPANPLATPAHIQPDWYFLPFY 292
CYTB MTH00033
cytochrome b; Provisional
 12-274 1.85e-106

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 313.80  E-value: 1.85e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  12 NSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMFFICIY 91
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  92 LHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 171
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 172 NRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLClINPY---MLGD 248
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                         250       260
                  ....*....|....*....|....*.
gi 1933122523 249 PDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAY 277
CYTB MTH00086
cytochrome b; Provisional
 8-274 4.78e-103

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 304.17  E-value: 4.78e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   8 KILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMFF 87
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  88 ICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVD 167
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 168 NATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTsILIMLCLINPYMLG 247
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                         250       260
                  ....*....|....*....|....*..
gi 1933122523 248 DPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAY 266
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 8.77e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 8.77e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   5 PLIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  85 MFFICIYLHVGRGIYYGSYM--YMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 162
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1933122523 163 GFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 202
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 1.91e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.06  E-value: 1.91e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  14 LVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMFFICIYLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  94 VGRGIYYGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 171
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1933122523 172 NRFFTFHFVLPFMIAAMAAIHLFFLHQTG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 6-274 7.72e-71

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 221.78  E-value: 7.72e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523   6 LIKILNNSLVDLPAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASM 85
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  86 FFICIYLHVGRGIYYGSYMYMQTWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFA 165
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 166 VDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNI-EKIPFHPYFTFKDSITFVMMTSILIMLCLINPY 244
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270
                  ....*....|....*....|....*....|
gi 1933122523 245 MLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFY 270
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-249 7.95e-49

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 159.33  E-value: 7.95e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  84 SMFFICIYLHVGRGIYYGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 161
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 162 GGFAVDNATLNRFFTFHF-VLPFMIAAMAAIHLFFLHQTGSNNPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCL 240
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1933122523 241 INPYMLGDP 249
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 18-205 4.61e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 135.99  E-value: 4.61e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  18 PAPTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMFFICIYLHVGRG 97
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  98 IYYGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFF 175
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1933122523 176 TFH-FVLPFMIAAMAAIHLFFLHQTGSNNPI 205
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 20-205 9.90e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.05  E-value: 9.90e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523  20 PTNISFWWNFGSLLGLCLIIQIVTGLFLAMHYTPNIEMAFSSVVHICRDVNNGWIIRTLHANGASMFFICIYLHVGRGIY 99
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122523 100 YGSYMYMQ--TWMIGTAILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTF 177
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1933122523 178 H-FVLPFMIAAMAAIHLFFLHQTGSNNPI 205
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 203-274 2.66e-21

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 87.32  E-value: 2.66e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122523 203 NPIGLNGNIEKIPFHPYFTFKDSITFVMMTSILIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAY 274
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVY 72
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
254-274 1.11e-07

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 49.01  E-value: 1.11e-07
                          10        20
                  ....*....|....*....|.
gi 1933122523 254 PANPLVTPVHIQPEWYFLFAY 274
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFY 21
petD CHL00058
cytochrome b6/f complex subunit IV
 233-270 1.94e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 38.06  E-value: 1.94e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1933122523 233 SILIMLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYF 270
Cdd:CHL00058   49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYF 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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