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Conserved domains on  [gi|1931041630|dbj|GHP05450|]
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hypothetical protein PPROV_000420000 [Pycnococcus provasolii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
39-96 4.43e-35

Ribosomal protein S30;


:

Pssm-ID: 398432  Cd Length: 58  Bit Score: 126.23  E-value: 4.43e-35
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1931041630  39 KVHGSLARAGKVRGQTPKVAKQDKKKQPKGRAMKRIKYNRRFVNVVVGPGKKRGPNSN 96
Cdd:pfam04758   1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGGGRKKGPNSQ 58
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 177-511 3.36e-16

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 82.62  E-value: 3.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  177 MLGAICRRHGEPERALQALRHLESTGAPVRNVYsYTAVLSGLGRAGCISQAQALLASMDDVGLEADTAAHNAVLAALAKE 256
Cdd:PLN03218   442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKL-YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  257 ARWQDAEALTEQMRSRGVPRDVYTYTSIVHALGRAGHWERARVLVRNMvrgRLETRP---NVVTFSALMGACLACDEPAA 333
Cdd:PLN03218   521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM---KAETHPidpDHITVGALMKACANAGQVDR 597

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  334 AMATFHDMELCGVRPDAKALTHFFTACRAVDPPQGARAldIFRTQTecRDGVQPVTSTYNALIAALGSAGLCDDALAVLD 413
Cdd:PLN03218   598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS--IYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  414 EMEEADMEersPNGITYNAALFACARAGRASDARLLCARMDAAGVRRDAVTYAELLRALARGGCLRESLQILDELEQGvr 493
Cdd:PLN03218   674 DARKQGIK---LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-- 748

                          330
                   ....*....|....*...
gi 1931041630  494 EVRPNLVVYNVMLAECAR 511
Cdd:PLN03218   749 GLCPNTITYSILLVASER 766
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
39-96 4.43e-35

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 126.23  E-value: 4.43e-35
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1931041630  39 KVHGSLARAGKVRGQTPKVAKQDKKKQPKGRAMKRIKYNRRFVNVVVGPGKKRGPNSN 96
Cdd:pfam04758   1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGGGRKKGPNSQ 58
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 38-90 1.39e-20

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 85.59  E-value: 1.39e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1931041630  38 GKVHGSLARAGKVRGQTPKVAKQDKKKQPKGRAMKRIKYNRRFVNVVVGPGKK 90
Cdd:PTZ00467    2 GKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEK 54
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 177-511 3.36e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 82.62  E-value: 3.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  177 MLGAICRRHGEPERALQALRHLESTGAPVRNVYsYTAVLSGLGRAGCISQAQALLASMDDVGLEADTAAHNAVLAALAKE 256
Cdd:PLN03218   442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKL-YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  257 ARWQDAEALTEQMRSRGVPRDVYTYTSIVHALGRAGHWERARVLVRNMvrgRLETRP---NVVTFSALMGACLACDEPAA 333
Cdd:PLN03218   521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM---KAETHPidpDHITVGALMKACANAGQVDR 597

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  334 AMATFHDMELCGVRPDAKALTHFFTACRAVDPPQGARAldIFRTQTecRDGVQPVTSTYNALIAALGSAGLCDDALAVLD 413
Cdd:PLN03218   598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS--IYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  414 EMEEADMEersPNGITYNAALFACARAGRASDARLLCARMDAAGVRRDAVTYAELLRALARGGCLRESLQILDELEQGvr 493
Cdd:PLN03218   674 DARKQGIK---LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-- 748

                          330
                   ....*....|....*...
gi 1931041630  494 EVRPNLVVYNVMLAECAR 511
Cdd:PLN03218   749 GLCPNTITYSILLVASER 766
RPS30 COG4919
Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 ...
 41-81 4.52e-09

Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443947  Cd Length: 52  Bit Score: 52.70  E-value: 4.52e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1931041630  41 HGSLARAGKVRGQTPKV-AKQDKKKQPKGRamKRIKYNRRFV 81
Cdd:COG4919     4 HGSLTKAGKVRSQTPKIpAKPRKNPPPRVR--NRREYRKRFV 43
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 242-290 6.35e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 6.35e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1931041630 242 DTAAHNAVLAALAKEARWQDAEALTEQMRSRGVPRDVYTYTSIVHALGR 290
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 279-315 7.22e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 7.22e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1931041630 279 YTYTSIVHALGRAGHWERARVLVRNMVRGRLEtrPNV 315
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE--PDV 35
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
39-96 4.43e-35

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 126.23  E-value: 4.43e-35
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1931041630  39 KVHGSLARAGKVRGQTPKVAKQDKKKQPKGRAMKRIKYNRRFVNVVVGPGKKRGPNSN 96
Cdd:pfam04758   1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGGGRKKGPNSQ 58
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 38-90 1.39e-20

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 85.59  E-value: 1.39e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1931041630  38 GKVHGSLARAGKVRGQTPKVAKQDKKKQPKGRAMKRIKYNRRFVNVVVGPGKK 90
Cdd:PTZ00467    2 GKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEK 54
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 177-511 3.36e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 82.62  E-value: 3.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  177 MLGAICRRHGEPERALQALRHLESTGAPVRNVYsYTAVLSGLGRAGCISQAQALLASMDDVGLEADTAAHNAVLAALAKE 256
Cdd:PLN03218   442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKL-YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  257 ARWQDAEALTEQMRSRGVPRDVYTYTSIVHALGRAGHWERARVLVRNMvrgRLETRP---NVVTFSALMGACLACDEPAA 333
Cdd:PLN03218   521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM---KAETHPidpDHITVGALMKACANAGQVDR 597

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  334 AMATFHDMELCGVRPDAKALTHFFTACRAVDPPQGARAldIFRTQTecRDGVQPVTSTYNALIAALGSAGLCDDALAVLD 413
Cdd:PLN03218   598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS--IYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  414 EMEEADMEersPNGITYNAALFACARAGRASDARLLCARMDAAGVRRDAVTYAELLRALARGGCLRESLQILDELEQGvr 493
Cdd:PLN03218   674 DARKQGIK---LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-- 748

                          330
                   ....*....|....*...
gi 1931041630  494 EVRPNLVVYNVMLAECAR 511
Cdd:PLN03218   749 GLCPNTITYSILLVASER 766
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 182-513 7.93e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.83  E-value: 7.93e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  182 CRRHGEPERALQALRHLESTGAPVrNVYSYTAVLSGLGRAGCISQAQALLASMDDVGLEADTAAHNAVLAALAKEARWQD 261
Cdd:PLN03218   482 CAKSGKVDAMFEVFHEMVNAGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  262 AEALTEQMRSRGVP--RDVYTYTSIVHALGRAGHWERARVLVRNMVRGRLETRPNVVTfsALMGACLACDEPAAAMATFH 339
Cdd:PLN03218   561 AFDVLAEMKAETHPidPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYD 638

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  340 DMELCGVRPDAKalthFFTACraVDPPQGARALDI-FRTQTECR-DGVQPVTSTYNALIAALGSAGLCDDALAVLDEMEE 417
Cdd:PLN03218   639 DMKKKGVKPDEV----FFSAL--VDVAGHAGDLDKaFEILQDARkQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  418 ADMEersPNGITYNAALFACARAGRASDARLLCARMDAAGVRRDAVTYAELLRALARGGCLRESLQILDEL-EQGvreVR 496
Cdd:PLN03218   713 IKLR---PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAkEDG---IK 786

                          330
                   ....*....|....*..
gi 1931041630  497 PNLVVYNVMLAECARSI 513
Cdd:PLN03218   787 PNLVMCRCITGLCLRRF 803
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 204-492 4.08e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 66.44  E-value: 4.08e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  204 PVRNVYSYTAVLSGLGRAGCISQAQALLASMDDVG-LEADTAAHNAVLAALAKEARWQDAEALTEQMRsrgVPRdVYTYT 282
Cdd:PLN03218   366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGlLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---NPT-LSTFN 441

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  283 SIVHALGRAGHWERARVLVRnMVRGRlETRPNVVTFSALMGACLACDEPAAAMATFHDMELCGVRPDAKALTHFFTAC-R 361
Cdd:PLN03218   442 MLMSVCASSQDIDGALRVLR-LVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCaR 519

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630  362 AVDPPQGARALDIFRTQTecrdgVQPVTSTYNALIAALGSAGLCDDALAVLDEMEEADMEERsPNGITYNAALFACARAG 441
Cdd:PLN03218   520 AGQVAKAFGAYGIMRSKN-----VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-PDHITVGALMKACANAG 593

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1931041630  442 RASDARLLCARMDAAGVRRDAVTYAELLRALARGGCLRESLQILDEL-EQGV 492
Cdd:PLN03218   594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMkKKGV 645
PRK09336 PRK09336
30S ribosomal protein S30e; Provisional
 41-83 3.42e-09

30S ribosomal protein S30e; Provisional


Pssm-ID: 181786  Cd Length: 50  Bit Score: 52.87  E-value: 3.42e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1931041630  41 HGSLARAGKVRGQTPKV-AKQDKKKQPKGRamKRIKYNRRFVNV 83
Cdd:PRK09336    4 HGSLTKAGKVRSQTPKIpPKPKKNEVPRVR--NRREYERRVLKA 45
RPS30 COG4919
Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 ...
 41-81 4.52e-09

Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443947  Cd Length: 52  Bit Score: 52.70  E-value: 4.52e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1931041630  41 HGSLARAGKVRGQTPKV-AKQDKKKQPKGRamKRIKYNRRFV 81
Cdd:COG4919     4 HGSLTKAGKVRSQTPKIpAKPRKNPPPRVR--NRREYRKRFV 43
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 205-490 1.47e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 57.96  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 205 VRNVYSYTAVLSGLGRAGCISQAQALLASMDdvglEADTAAHNAVLAALAKEARWQDAEALTEQMRSRGVPRDVYTYTSI 284
Cdd:PLN03081  256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 285 VHALGRAGHWERARVLVRNMVR--------------------GRLET---------RPNVVTFSALMGACLACDEPAAAM 335
Cdd:PLN03081  332 IRIFSRLALLEHAKQAHAGLIRtgfpldivantalvdlyskwGRMEDarnvfdrmpRKNLISWNALIAGYGNHGRGTKAV 411

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 336 ATFHDMELCGVRPDAKALTHFFTACR---AVDppQGARaldIFRTQTECRdGVQPVTSTYNALIAALGSAGLCDDALAVL 412
Cdd:PLN03081  412 EMFERMIAEGVAPNHVTFLAVLSACRysgLSE--QGWE---IFQSMSENH-RIKPRAMHYACMIELLGREGLLDEAYAMI 485

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 413 demeeadmeERSPNGITYN---AALFACARAGRASDARLLCARMDAAGVRRDAvTYAELLRALARGGCLRESLQILDELE 489
Cdd:PLN03081  486 ---------RRAPFKPTVNmwaALLTACRIHKNLELGRLAAEKLYGMGPEKLN-NYVVLLNLYNSSGRQAEAAKVVETLK 555


                  .
gi 1931041630 490 Q 490
Cdd:PLN03081  556 R 556
PLN03077 PLN03077
Protein ECB2; Provisional
 144-509 3.11e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 56.78  E-value: 3.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 144 LAKQLAKCGTLSEIENLLTPMQTKDMSSkeLSFMLGAiCRRHGEPERALQALRHLESTGAPVRNVySYTAVLSGLGRAGC 223
Cdd:PLN03077  329 LIQMYLSLGSWGEAEKVFSRMETKDAVS--WTAMISG-YEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGD 404

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 224 ISQAQALLASMDDVGLEADTAAHNAVLAALAKEARWQDAEALTEQMRSRgvprDVYTYTSIVHALGRAGHWERARVLVRN 303
Cdd:PLN03077  405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQ 480

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 304 MVrgrLETRPNVVTFSALMGAC-----LACDEPAAAMATFHDMELCGVRPDAkaLTHFFTACRAVDPpqgarALDIFRTQ 378
Cdd:PLN03077  481 ML---LTLKPNSVTLIAALSACarigaLMCGKEIHAHVLRTGIGFDGFLPNA--LLDLYVRCGRMNY-----AWNQFNSH 550

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 379 TecrdgvQPVTStYNALIAALGSAGLCDDALAVLDEMEEADMeerSPNGITYNAALFACARAGRASDARLLCARM-DAAG 457
Cdd:PLN03077  551 E------KDVVS-WNILLTGYVAHGKGSMAVELFNRMVESGV---NPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYS 620

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1931041630 458 VRRDAVTYAELLRALARGGCLRESLQILDELeqgvrEVRPNLVVYNVMLAEC 509
Cdd:PLN03077  621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLNAC 667
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 242-290 6.35e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 6.35e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1931041630 242 DTAAHNAVLAALAKEARWQDAEALTEQMRSRGVPRDVYTYTSIVHALGR 290
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 276-325 6.87e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.90  E-value: 6.87e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1931041630 276 RDVYTYTSIVHALGRAGHWERARVLVRNMVRGRLEtrPNVVTFSALMGAC 325
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVK--PNVYTYTILINGL 48
PLN03077 PLN03077
Protein ECB2; Provisional
 202-512 2.38e-07

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 54.09  E-value: 2.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 202 GAPVRNVYSYTAVLSGLGRAGCISQAQALLASMDDVGLEADTAAHNAVLAA---LAKEARWQDAEALTEQmrsRGVPRDV 278
Cdd:PLN03077  247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAcelLGDERLGREMHGYVVK---TGFAVDV 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 279 YTYTSIVHALGRAGHWERARvlvrnMVRGRLETRpNVVTFSALMGACLACDEPAAAMATFHDMELCGVRPD--------- 349
Cdd:PLN03077  324 SVCNSLIQMYLSLGSWGEAE-----KVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDeitiasvls 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 350 -----------------------------AKALTHFFTACRAVDppqgaRALDIFRTQTEcrdgvQPVTStYNALIAALG 400
Cdd:PLN03077  398 acaclgdldvgvklhelaerkglisyvvvANALIEMYSKCKCID-----KALEVFHNIPE-----KDVIS-WTSIIAGLR 466

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 401 SAGLCDDALAVLDEMEEADmeerSPNGITYNAALFACARAGRAS-------------------------DARLLCARMDA 455
Cdd:PLN03077  467 LNNRCFEALIFFRQMLLTL----KPNSVTLIAALSACARIGALMcgkeihahvlrtgigfdgflpnallDLYVRCGRMNY 542

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1931041630 456 A-----GVRRDAVTYAELLRALARGGCLRESLQILDELEQGvrEVRPNLVVYNVMLAECARS 512
Cdd:PLN03077  543 AwnqfnSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRS 602
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 265-325 3.95e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 47.35  E-value: 3.95e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1931041630 265 LTEQMRSRGVPRDVYTYTSIVHALGRAGHWERARVLVRNMVRGRLetRPNVVTFSALMGAC 325
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGI--KPTLDTYNAILGVI 60
PLN03077 PLN03077
Protein ECB2; Provisional
 146-511 5.41e-07

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 52.93  E-value: 5.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 146 KQLAKCGTLSEIENLLTPMQTKDMSSKELSFM-LGAIC---RRHGEPERALQ-ALRHLESTGAPVRNvysytAVLSGLGR 220
Cdd:PLN03077   59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVaLFRLCewkRAVEEGSRVCSrALSSHPSLGVRLGN-----AMLSMFVR 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 221 AGCISQAQALLASMDdvglEADTAAHNAVLAALAKEARWQDAEALTEQMRSRGVPRDVYTYTSIVHALGRAGHWERARVL 300
Cdd:PLN03077  134 FGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 301 VRNMVRGRLETRPNVVtfSALMGACLACDEPAAAMATFHDM------------------ELC-------------GVRPD 349
Cdd:PLN03077  210 HAHVVRFGFELDVDVV--NALITMYVKCGDVVSARLVFDRMprrdciswnamisgyfenGECleglelfftmrelSVDPD 287

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 350 AKALTHFFTACRAVDPPQGARALDIFRTQTecrdGVQPVTSTYNALIAALGSAGLCDDALAVLDEMEEAdmeerspNGIT 429
Cdd:PLN03077  288 LMTITSVISACELLGDERLGREMHGYVVKT----GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-------DAVS 356

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 430 YNAALFACARAGRASDARLLCARMDAAGVRRDAVTYAELLRALARGGCLRESLQiLDELEQGVREVRPNLVVYNV--MLA 507
Cdd:PLN03077  357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALieMYS 435


                  ....
gi 1931041630 508 ECAR 511
Cdd:PLN03077  436 KCKC 439
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 453-509 1.36e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.12  E-value: 1.36e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1931041630 453 MDAAGVRRDAVTYAELLRALARGGCLRESLQILDELEQgvREVRPNLVVYNVMLAEC 509
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKK--KGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 272-305 2.60e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.18  E-value: 2.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1931041630 272 RGVPRDVYTYTSIVHALGRAGHWERARVLVRNMV 305
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 313-360 3.42e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.58  E-value: 3.42e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1931041630 313 PNVVTFSALMGACLACDEPAAAMATFHDMELCGVRPDAKALTHFFTAC 360
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 180-323 4.84e-04

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 43.32  E-value: 4.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931041630 180 AICRRHGEperALQALRHLESTGAPVRNVYSYTAVLSGLGRAGCISQAQALLASMDDVGLEADTAAHNAVLAALAKEARW 259
Cdd:PLN03081   98 VACGRHRE---ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1931041630 260 QDAEALTEQMRSrgvpRDVYTYTSIVHALGRAGHWERARVLVRNM--VRGRLETRPNVVTFSALMG 323
Cdd:PLN03081  175 IDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMweDGSDAEPRTFVVMLRASAG 236
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 279-315 7.22e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 7.22e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1931041630 279 YTYTSIVHALGRAGHWERARVLVRNMVRGRLEtrPNV 315
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE--PDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 460-511 7.25e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.03  E-value: 7.25e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1931041630 460 RDAVTYAELLRALARGGCLRESLQILDELEQgvREVRPNLVVYNVMLAECAR 511
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK--RGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 316-350 7.82e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.35  E-value: 7.82e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1931041630 316 VTFSALMGACLACDEPAAAMATFHDMELCGVRPDA 350
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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