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Conserved domains on  [gi|1917171632|gb|QOL11844|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Grallaria rufula saltuensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 6.71e-154

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 435.41  E-value: 6.71e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   1 KLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWD 80
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  81 ITQLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALG 160
Cdd:MTH00112   86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 161 GWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLM 240
Cdd:MTH00112  166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 241 LTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVSTLT 320
Cdd:MTH00112  246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325

                         330       340
                  ....*....|....*....|
gi 1917171632 321 TTLMTLTLMLLPLSPMTFTI 340
Cdd:MTH00112  326 ATLTTLSTLLLPLSPMILTI 345
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 6.71e-154

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 435.41  E-value: 6.71e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   1 KLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWD 80
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  81 ITQLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALG 160
Cdd:MTH00112   86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 161 GWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLM 240
Cdd:MTH00112  166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 241 LTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVSTLT 320
Cdd:MTH00112  246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325

                         330       340
                  ....*....|....*....|
gi 1917171632 321 TTLMTLTLMLLPLSPMTFTI 340
Cdd:MTH00112  326 ATLTTLSTLLLPLSPMILTI 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-293 1.26e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 134.47  E-value: 1.26e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   9 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLF-SSMTNAwFTGQWDITQLTH 86
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  87 PAS------------CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-------I 147
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaadwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYL--YCLMTIAIFFTLnttktLKLS 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVI-----LLLS 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 224 TMMTAWTKI----------PALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAY 293
Cdd:COG1007   346 RKGGEAEEIedlaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 18-263 8.21e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 8.21e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  18 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQL-----------T 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  86 HPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP------ILLTLMAITSTAL 159
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPsspfiqQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 160 GGWAGLNQTQIRKILAFSSISHLGWMTIIL----IYNPKLTLLTFYLYCLMTIAIF-----FTLNTTKTLKLSTMMTAWT 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171632 231 KIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQ 263
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-292 1.14e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 112.35  E-value: 1.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   9 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHP 87
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  88 ASC------------LLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPIL 148
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 149 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYL--YCLMTIAIFFTL------NTTK 218
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171632 219 TLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLA 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 6.71e-154

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 435.41  E-value: 6.71e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   1 KLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWD 80
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  81 ITQLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALG 160
Cdd:MTH00112   86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 161 GWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLM 240
Cdd:MTH00112  166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 241 LTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVSTLT 320
Cdd:MTH00112  246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325

                         330       340
                  ....*....|....*....|
gi 1917171632 321 TTLMTLTLMLLPLSPMTFTI 340
Cdd:MTH00112  326 ATLTTLSTLLLPLSPMILTI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-340 2.73e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 378.38  E-value: 2.73e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   5 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQL 84
Cdd:MTH00135   10 LFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  85 THPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSlNPILLTLMAITSTALGGWAG 164
Cdd:MTH00135   90 SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 165 LNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLTLL 244
Cdd:MTH00135  169 LNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 245 SLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP-VSTLTTTL 323
Cdd:MTH00135  249 SLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTqLTLPLAIS 328

                         330
                  ....*....|....*..
gi 1917171632 324 MTLTLMLLPLSPMTFTI 340
Cdd:MTH00135  329 TTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 3-340 4.55e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 365.01  E-value: 4.55e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   3 MSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDIT 82
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  83 QLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALGGW 162
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 163 AGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLT 242
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 243 LLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVSTLTTT 322
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*...
gi 1917171632 323 LMTLTLMLLPLSPMTFTI 340
Cdd:MTH00070  328 TIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-340 8.14e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 323.72  E-value: 8.14e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   2 LMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDI 81
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  82 TQLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALGG 161
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 162 WAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLML 241
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 242 TLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPnSVNYMKL-WQ-TNKPVSTL 319
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKMkWQfENTKPMTL 325

                         330       340
                  ....*....|....*....|.
gi 1917171632 320 TTTLMTLTLMLLPLSPMTFTI 340
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 5-340 2.97e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.78  E-value: 2.97e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   5 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQL 84
Cdd:MTH00200   10 ILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  85 THPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALGGWAG 164
Cdd:MTH00200   90 LGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 165 LNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLTLL 244
Cdd:MTH00200  170 LNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 245 SLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVSTLTTTLM 324
Cdd:MTH00200  250 SLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLL 329

                         330
                  ....*....|....*.
gi 1917171632 325 TLTLMLLPLSPMTFTI 340
Cdd:MTH00200  330 LLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 5-317 1.11e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 251.77  E-value: 1.11e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   5 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQL 84
Cdd:MTH00041   10 ITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGP 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  85 THPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALGGWAG 164
Cdd:MTH00041   90 LNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 165 LNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLTLL 244
Cdd:MTH00041  170 LNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSIL 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171632 245 SLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVS 317
Cdd:MTH00041  250 SLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-314 7.40e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 192.73  E-value: 7.40e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   1 KLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWD 80
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  81 ITqlthpaSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLnpiLLTLMAITSTALG 160
Cdd:MTH00160   87 NI------SSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN---FIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 161 GWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLM 240
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171632 241 LTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCAtITLPPNSVNYMKLWQTNK 314
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNK 310
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-297 5.72e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 171.99  E-value: 5.72e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   1 KLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWD 80
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  81 ITqlthpascLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPI-LLTLMAITSTAL 159
Cdd:MTH00144   86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 160 GGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNtTKTLKLSTMMTAWTKIPALTASL 239
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSI 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171632 240 MLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATI 297
Cdd:MTH00144  237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-305 1.77e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 163.03  E-value: 1.77e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   7 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSmtnawfTGQWDITQLTH 86
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  87 PASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAITSTALGGWAGLN 166
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 167 QTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLTLLSL 246
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171632 247 AGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYcATITLPPNSVN 305
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-293 6.62e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 148.28  E-value: 6.62e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   7 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMtnAWFTGQWditqlTH 86
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  87 PASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHslNPILLTLMAITSTALGGWAGLN 166
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 167 QTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLTLLSL 246
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171632 247 AGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAY 293
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-293 1.26e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 134.47  E-value: 1.26e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   9 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLF-SSMTNAwFTGQWDITQLTH 86
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  87 PAS------------CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-------I 147
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaadwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYL--YCLMTIAIFFTLnttktLKLS 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVI-----LLLS 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 224 TMMTAWTKI----------PALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAY 293
Cdd:COG1007   346 RKGGEAEEIedlaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-291 7.33e-31

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 121.47  E-value: 7.33e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   9 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHP 87
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  88 ------------ASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLP-------PITLLLLTSHSLNPIL 148
Cdd:PRK05777  193 ladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafavllrLLVVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 149 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYL--YCLMTIAIF-FTLNTTKTLKLS 223
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgVISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171632 224 TMMTAWTKI----PALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:PRK05777  353 ESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 8-291 8.00e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 117.05  E-value: 8.00e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   8 LTLGTTITISSNHWMMAWTGLEINTLAILPLI-SKPHHPRAVEAATKYFLVQATASTLLLFS-------------SMTNA 73
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  74 WFTGQWDITQLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNpiLLTLMA 153
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 154 ITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIIL----IYNPKLTLLTFYLYCLMTIAIF---FTLNTTKTLkLSTMM 226
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171632 227 TAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 5-291 8.34e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 115.50  E-value: 8.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   5 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDI-- 81
Cdd:MTH00199  103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  82 --TQLTHPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTlmAITSTAL 159
Cdd:MTH00199  183 inSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 160 GGWAGLNQTQIRKILAFSSISHLGWMTIILIYNP----KLTLLTFYLYCLMTIAIFF---TLNTTKTLkLSTMMTAWTKI 232
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSiilSLKLTKGL-IVEVSGLSRKN 339

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171632 233 PALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:MTH00199  340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 18-263 8.21e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 8.21e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  18 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQL-----------T 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  86 HPASCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP------ILLTLMAITSTAL 159
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPsspfiqQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 160 GGWAGLNQTQIRKILAFSSISHLGWMTIIL----IYNPKLTLLTFYLYCLMTIAIF-----FTLNTTKTLKLSTMMTAWT 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171632 231 KIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQ 263
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-292 1.14e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 112.35  E-value: 1.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   9 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHP 87
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  88 ASC------------LLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPIL 148
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 149 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYL--YCLMTIAIFFTL------NTTK 218
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171632 219 TLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLA 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 25-291 4.68e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 95.98  E-value: 4.68e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  25 WTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHPAS----------CLLLT 94
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  95 TAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAM---------KLPPITLLLLTSHSLNPILLTLMAITStALGGWAGL 165
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRVLTLLFGADPALFLGTLLLVLGLLTM-LVGALGAL 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 166 NQTQIRKILAFSSISHLGWMTI-ILIYNPK-LTLLTFYL--YCLMTIAIFFT----LNTTKTLKLSTMMTAWTKIPALTA 237
Cdd:COG0651   292 AQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAA 371

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1917171632 238 SLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:COG0651   372 AFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ndhB CHL00049
NADH dehydrogenase subunit 2
 46-291 5.89e-17

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 81.59  E-value: 5.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  46 RAVEAATKYFLVQATASTLLL--FSsmtnaWFTGQ-------WDI------TQLTHPASCLL----LTTAISMKLGLVPF 106
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 107 HFWFPEVLQGS-----------SLTTGLLLATAMklppITLLLLTSHSLNPILLTLMAITSTALGGWAGLNQTQIRKILA 175
Cdd:CHL00049  234 HQWTPDVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 176 FSSISHLGWMTIILI-------YNPKLTLLTFYLYC-LMTIA--IFFTLNtTKTLKLSTMMTAWTKIPALTASLMLTLLS 245
Cdd:CHL00049  310 YSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMnLGTFAciVLFGLR-TGTDNIRDYAGLYTKDPFLALSLALCLLS 388

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1917171632 246 LAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:CHL00049  389 LGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 5-291 1.06e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.06  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   5 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAV---------EAATKYFLVQATASTLLLFSSMTNAWF 75
Cdd:MTH00198  194 VLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGF 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  76 TGQWDITQLTHPASC--------------LLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTS 141
Cdd:MTH00198  274 TGNEGMLGTILSATLettnielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV 353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 142 HSLNpiLLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWM----------------TIILIYNPKlTLLTFYLYCl 205
Cdd:MTH00198  354 ITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligvsagtyeslqaswTYAVTYLVS-ALASFTVIC- 429

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 206 mTIAIFFTLNTTKTLK------------LSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPT 273
Cdd:MTH00198  430 -TLEEFGTRTPTSRQRdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSS 508

                         330       340
                  ....*....|....*....|....*
gi 1917171632 274 ATIITLLSLLGL-------FFYLRL 291
Cdd:MTH00198  509 LSIYYLVALFAIictcisaFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-305 2.24e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 73.76  E-value: 2.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  28 LEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFS-SMTNAwFTGQWDITQLTH--PASCLLLT------TAIS 98
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  99 MKLGLVPFHFWFPEVLQG-SSLTTGLLLATAMK----------LPPITLLLLTSHSLNPILLTLMAITSTAlGGWAGLNQ 167
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLGWLLAVLALLSMLV-GSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 168 TQIRKILAFSSISHLGWMTIILIYNPKLTLL--TFYL--YCLMTIAIFFTLN----TTKTLKLSTMMTAWTKIPALTASL 239
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171632 240 MLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAYCATITLPPNSVN 305
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE 438
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
45-258 2.59e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 73.55  E-value: 2.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  45 PRAVEAATKYFLVQATASTLLLF-SSMTNAWFTGQwdiTQLTHPASCLL----LTTAISM---------KLGLVPFHFWF 110
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspsLGLALALvfviagiafKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 111 PEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-------ILLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLG 183
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 184 WMTIILI------YNPKLTLLTFYLY---CLMTIAIFFTLNtTKTLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTG 254
Cdd:PRK02504  314 FVMIGLVagteagYASMVFYLLAYLFmnlGAFACVILFSLR-TGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                  ....
gi 1917171632 255 FLPK 258
Cdd:PRK02504  393 FFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-261 3.45e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.88  E-value: 3.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  28 LEINTLAILPLIS-KPHHPRAVEAATKYFLVQATASTLLLFSSmtnAWFTGQWDITQLTHPASCL-------------LL 93
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  94 TTAISMKLGLVPFHFWFPEVLQG--SSLTTGLLLATA------MKLPPITLLLLTSHSLNPILLTLMAITSTALGGWAGL 165
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQaglyalARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 166 NQTQIRKILAFSSISHLGWMTI---ILIYNPKLTLLTFYLYCLMTIAIFFTLN-----------------TTKTLKLSTM 225
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1917171632 226 MTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLI 261
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 43-293 1.36e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.40  E-value: 1.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  43 HHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHPASCLL---LTTAISM--------KLGLVPFHFWFP 111
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 112 EVLQG----SSL-------TTGLLLATAMklppitlllLTSHSLNPILLTLMAI--TSTAL-GGWAGLNQTQIRKILAFS 177
Cdd:COG1009   236 DAMEGptpvSALlhaatmvKAGVYLLARL---------SPLFALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYS 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 178 SISHLGWMTIILiynpKLTLLTFYLYCLMTIAIFftlnttktlKLSTMMTA------------------WTKIPALTASL 239
Cdd:COG1009   307 TVSQLGYMFLAL----GVGAYVAALFHLLTHAFF---------KALLFLGAgsvihatgtrdirkmgglRKKMPITAITF 373

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171632 240 MLTLLSLAGLPPFTGFLPKWLIIQE-LTKQEMTPTATIITLL-SLLGLFFYLRLAY 293
Cdd:COG1009   374 LIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAFLTAFYSFRLFF 429
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 44-287 1.27e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.86  E-value: 1.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  44 HPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQW--DITQLTH---PAS-----CLLLTTAISMKLGLVPFHFWFPEV 113
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 114 LQGSSLTTGLLLATAMKLP--------PITLLLLTSHSLNPILLTLmAITSTALGGWAGLNQTQIRKILAFSSISHLGWM 185
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLKMggygllrfALPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 186 TI-ILIYNPK-LTLLTFYL--YCLMTIAIFFTL----NTTKTLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLP 257
Cdd:COG1008   315 LLgIFALNPLgLQGAVLQMvsHGLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394

                         250       260       270
                  ....*....|....*....|....*....|
gi 1917171632 258 KWLIIQELTKqemtpTATIITLLSLLGLFF 287
Cdd:COG1008   395 EFLVLLGAFQ-----VNPWLAILAALGLIL 419
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 29-293 1.27e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.16  E-value: 1.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  29 EINTLAILPLISKPHHpRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDIT-------QLTHPASCLLLTTAIS--- 98
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLLafg 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  99 -MKLGLVPFHFWFPE-----------VLQGSSLTTG-----LLLATAM--KLPPITLLLLTSHSLNPILLTLMAITsTAL 159
Cdd:PRK08668  207 vAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygflLVLYVLPgtKLFSEFGTYRGVPLFNYILAWLGNIS-IIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 160 GGWAGLNQTQIRKILAFSSISHLGWmtiILIYNPKLTLLTF-------YLYCLMTIAIFFTLNT----TKTLKLSTMMTA 228
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMGGL 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171632 229 WTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAY 293
Cdd:PRK08668  363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 15-283 6.48e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.78  E-value: 6.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  15 TISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLV------QATASTLLLFSSMTNAWFTGQWDI--TQLTH 86
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANAATVMGDGEMAIlwTELLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  87 PASCL---LLTTAISM-------KLGLVPFHFWFPEVLQG-----SSLTTGLLLATAMKLPPITLLLLTSHSLN---PIL 148
Cdd:PRK06458  204 HASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVALYAVLRYYILIDAAIGSdfpGRL 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 149 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYCLM----TIAIFFT----LNTTKTL 220
Cdd:PRK06458  284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFFAsgnvLQKYGTR 363

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171632 221 KLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQElTKQEMTPTATIITLLSLL 283
Cdd:PRK06458  364 DINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTA-GLARGPLLIAILLLLLLT 425
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 45-287 3.17e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 3.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  45 PRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQW----DITQLTHPASC-----LLLTTAISMKLGLVPFHFWFPEV-- 113
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 114 ---LQGSSLTTGLLLATA---MKLPPITLLLLTSHSLNPILLTLmAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTI 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygFLRFNLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 188 -ILIYNPKLT---LLTFYLYCLMTIAIFFTLNT----TKTLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKW 259
Cdd:TIGR01972 311 gIFSFNELGIsgaVFQMISHGLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....*...
gi 1917171632 260 LIIQELTKqemtpTATIITLLSLLGLFF 287
Cdd:TIGR01972 391 LILLGSFK-----VNPVVAFLAALGIVL 413
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-258 8.83e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.69  E-value: 8.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  91 LLLTTAISmKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK------LPPITLLLLTSHSLNPILLTLMAITsTALGGWAG 164
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVkagiylVARLAPGFADVPVWRPTVLVLGLAT-MLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 165 LNQTQIRKILAFSSISHLGWMTIIL-IYNPKLTLLTFYLYC---LMTIAIFFTL----NTTKTLKLSTMMTAWTKIPALT 236
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPVLA 365

                         170       180
                  ....*....|....*....|..
gi 1917171632 237 ASLMLTLLSLAGLPPFTGFLPK 258
Cdd:PRK12644  366 VVAALAAASMAGLPPLLGFVAK 387
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 147-284 2.24e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 49.15  E-value: 2.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 147 ILLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLY----CLMTIAIFFTLNT----TK 218
Cdd:PRK12647  260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTG 339

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171632 219 TLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTkqEMTPTATIITLLSLLG 284
Cdd:PRK12647  340 TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 8-290 2.26e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.98  E-value: 2.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   8 LTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATA------STLLLFSSMTNAWFTGQWDI 81
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  82 TQLTHPA----------SCLLLTTAISMKLGLVPFHFWFPEVLQG-----SSLTTGLLLATAM----KLPPITLLLLTSH 142
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKapsvvSALLSGTVLNIGIygilRLSALLRQSGAAE 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 143 SLNPILLTLmAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTI-ILIYNPKL---TLLTFYLYCLMTIAIFFTLNTTK 218
Cdd:PRK08676  271 QFSNVLIGL-GIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLgIGIGTPLAlfwMLFHMLAHSLVKSGLFFSAGILH 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171632 219 TLKLSTMMTAWTKI----PALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLG---LFFYLR 290
Cdd:PRK08676  350 RQYRSDRFDRIFDVfrlqPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-266 4.12e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.41  E-value: 4.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  28 LEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTH--PASCLLLTTAISMKLGLVP 105
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 106 FHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPI--LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLG 183
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 184 WMTIILIYNPKLTLltfyLYCLMTIAIFFTLNT----TKTLKLSTMMTAWTKIPALTASlmltlLSLAGLPPFTGFLPKW 259
Cdd:PRK07234  283 FILAAPLVGGLYAL----AHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKWIPLTMAS-----FSIAGFPLLAGFVSKV 353


                  ....*..
gi 1917171632 260 LIIQELT 266
Cdd:PRK07234  354 LTLKNLL 360
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 54-265 5.64e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.80  E-value: 5.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  54 YFLVQATASTLLLFSSMTNAWF-TGQWDITQLTHPA-----SCLLLTTAISMKLGLVPFHFWFPEVLQG-----SSLTTG 122
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPAspsnvSALMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 123 LLLATAM-KLPPITLLLLTSHSLNPILLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLG--------WMTIILIYNP 193
Cdd:PRK08667  246 VMLKVAVyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 194 KLTLLTFYLYCLMTI--AIFFTL---------NTTKTLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLII 262
Cdd:PRK08667  326 TLALLALGGALFHSLnhALFKSLlfltagsvvHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLY 405


                  ...
gi 1917171632 263 QEL 265
Cdd:PRK08667  406 ESF 408
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 28-286 8.04e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 47.28  E-value: 8.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  28 LEINTLAILPLISKPHHPRAVEAATKYFLVQATAS------TLLLFSSMTNAWFTGQWDITQLTHPASCLLLTTAISMKL 101
Cdd:PRK06525  142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 102 GLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPI------LLTLMAITSTALGGWAGLNQTQIRKILA 175
Cdd:PRK06525  222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIphvigyVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 176 FSSISHLGWMTIIL---IYNPKLTLL--TFY---------LYCLMTIAIFFTLNTTKTLKLSTMMtawTKIPALTASLML 241
Cdd:PRK06525  302 YSTITQLGYMFFGLslaILGSRLALEgsIAYifnhafaksLFFLVAGALSYSCGTRLLPRLRGVL---KKLPLVGVGFCV 378

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1917171632 242 TLLSLAGLPPFTGFLPKWLIIqeLTKQEMTPTATIITLLSLLGLF 286
Cdd:PRK06525  379 AALAITGVPPFNGFFSKFPIF--AAGFELSVEYWILLPAMVLLLI 421
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-262 1.11e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.04  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  28 LEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLLLFS-----------SMTNAWFTGQWDITQLTHPASCLLLTTA 96
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyaitgtlNMGDMFLIIQDLPTNRAIQIGVLFIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  97 ISMKLGLVPFHFWFPEVLQGS-SLTTGLLLATAMKLPPITLLLLTSHS--LNPILLTL--------MAITSTALGGWAGL 165
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIIRIVYDVfkANFVFTTLpfnnvfmiLAALAIVFGSVLAI 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 166 NQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLY----CLMTIAIFFTLNTTK----TLKLSTMMTAWTKIPALTA 237
Cdd:PRK12662  299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKITL 378

                         250       260
                  ....*....|....*....|....*
gi 1917171632 238 SLMLTLLSLAGLPPFTGFLPKWLII 262
Cdd:PRK12662  379 AFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12650 PRK12650
DUF4040 family protein;
92-299 1.21e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.96  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  92 LLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAM-KLPPITLLLLTSHSLN----PILLTLMAITSTALGGWAGLN 166
Cdd:PRK12650  213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVvKAGIYLLLRFSPVFHDvavwNWLLIIVGMITALMGAVFAVQ 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 167 QTQIRKILAFSSISHLGWM-TIILIYNP-KLT--LLTFYLYCLMTIAIFFTL----NTTKTLKLSTMMTAWTKIPALTAS 238
Cdd:PRK12650  293 KTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVS 372

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1917171632 239 LMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMtPTATIITLLSLLGLFFYLRLAYCATITL 299
Cdd:PRK12650  373 VTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
148-288 3.25e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 3.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTI-ILIYNPK-LTLLTFYLYCLMTI--AIFFTLNTTKTL--- 220
Cdd:PRK12663  274 LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVVktALFLIAGSLVRLtgy 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171632 221 -KLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQ-ELTKQEMTPTAT-----IITLLSLLGLFFY 288
Cdd:PRK12663  354 rSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALmlitsLITMYSLFRIFFL 428
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-279 2.48e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.50  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   6 MSLTLGTTITISSNHWMMaWTGLEINTLAILPLISKPHHPRAVEAATKYFLVQATASTLL-------LFSSMTNAWFTGQ 78
Cdd:PRK06589  124 LTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLflpavilIYTKTGNLDFVSG 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  79 WDITQLTHPASCLLLTTAISmKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPI----------- 147
Cdd:PRK06589  203 GLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLsylqrifaefn 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGW--MTIILIYNPKLTLLTFYLYC--LMTIAIFFTLNTTKTLK-- 221
Cdd:PRK06589  282 WLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIYSLKke 361

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 222 --LSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITL 279
Cdd:PRK06589  362 dqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 98-263 3.46e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.25  E-value: 3.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  98 SMKLGLvpfHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAIT-----STALGGWAGLNQTQIRK 172
Cdd:MTH00032  239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFFAATVGLVQNDLKK 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 173 ILAFSSISHLGWMTIILIYNPKLTLLTFYL--YCLMTIAIFFTLN------TTKTLKLSTMMTAWTKIPALTASLMLTLL 244
Cdd:MTH00032  316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSF 395

                         170
                  ....*....|....*....
gi 1917171632 245 SLAGLPPFTGFLPKWLIIQ 263
Cdd:MTH00032  396 SIMGLPYLTGFYSKDLILE 414
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 148-291 3.49e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.24  E-value: 3.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTI-ILIYNPK-LTLLTFYLYCLMTI--AIFF----TLNTTKT 219
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgVAMMTESgMIGAIYYLIHDMIVkaALFLligiMIKITGT 356

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171632 220 LKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:PRK07691  357 TDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 50-285 4.39e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 4.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  50 AATKYFLVQATASTLLLFSSMTNAWFTGQ--WDITQLTH---PASCLLLT-----TAISMKLGLVPFHFWFPEV-----L 114
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 115 QGSSLTTGLLL---ATAMKLPPITLLLLTSHSLNPILLTLmAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTI---- 187
Cdd:PRK12561  218 PVSMILAGVLLkmgGYALIRFNVQMLPDAHVYFAPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLgiaa 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 188 ---ILIYNPKLTLLTfylYCLMTIAIFF----TLNTTKTLKLSTMMTAWTKIPALTA-SLMLTLLSLAgLPPFTGFLPKW 259
Cdd:PRK12561  297 ftdLGISGAMLQMIS---HGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKTFAlFTASSMASLA-LPGMSGFVSEL 372

                         250       260
                  ....*....|....*....|....*...
gi 1917171632 260 LIIQELTKQEM--TPTATIITLLSLLGL 285
Cdd:PRK12561  373 TVFLGITSSDVysSTFRTITILLAAVGL 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 45-262 5.20e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.73  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  45 PRAVEAATKYFLVQATASTLLLFSSMTNAWF----TGQWDITQLTHPAS----------CLLLTTAIsmKLGLVPFHFWF 110
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLppgvqywlflAFFIAFAV--KMPMFPLHTWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 111 PEVLQ-----GSSLTTGLLLATA---MKLPPITLLLLTSHSLNPILLTLmAITSTALGGWAGLNQTQIRKILAFSSISHL 182
Cdd:PRK05846  235 PDAHVqaptaGSVLLAGILLKMGaygLLRFSLPLFPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSISHM 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 183 GWMTI-ILIYNPK-LTLLTFYLYC------LMTIAIFFTLNTTKTLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTG 254
Cdd:PRK05846  314 GFVTLgIFAGNQLgIQGAIFQMIShglssaALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSG 393


                  ....*...
gi 1917171632 255 FLPKWLII 262
Cdd:PRK05846  394 FVGEFLIL 401
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 159-258 7.57e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 41.33  E-value: 7.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 159 LGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTfylyclmtiAIFFTLNTTkTLKLSTMMTA---------- 228
Cdd:PRK12648  284 LGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAVA---------AIFHIINHA-TFKASLFMAAgiidhetgtr 353

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1917171632 229 --------WTKIPaLTASL-MLTLLSLAGLPPFTGFLPK 258
Cdd:PRK12648  354 dmrrlsglRRLMP-ITATLaMVAAAAMAGVPLLNGFLSK 391
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
148-293 1.05e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.79  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLYC----LMTIAIFF----TLNTTKT 219
Cdd:PRK06277  268 VLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLgagiVSYRTKT 347

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171632 220 LKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRLAY 293
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 2-265 1.22e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.54  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632   2 LMSIMSLT-LGTTITISSNHWMM---AWTGLEINTLAILPLISKPHHPRAVeaatkyFLVQATASTLLLFSSMTNAWF-T 76
Cdd:PRK06459   74 LSSLYILTiLGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiS 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  77 GQWDITQLTHPASCLLLTTAISMKLGLVPFHF--WFPE-----------VLQGSSLTTGLLLATAMKLPPITLLLLTSHs 143
Cdd:PRK06459  148 GTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIahgnapsnfsaILSATMTLMGVYGILKMTILTQTIPIGYFG- 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 144 lnpILLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWM-----TIILIYNPKLTLLTFYLYCLMTIAIFFTLNTT- 217
Cdd:PRK06459  227 ---LTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAKTg 303

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1917171632 218 -----KTLKLSTMMTAWTKIPALTA-SLMLTLLSLAGLPPFTGFLPKWLIIQEL 265
Cdd:PRK06459  304 lflssGLQEKQSITYSKKIRNRWIElGLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 148-291 2.37e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.75  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 148 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYLY--------CLMTIAIFFTLNTTKT 219
Cdd:PRK08377  275 LVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHminhaivkALLFLAVGYVGITLGG 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171632 220 LKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLSLLGLFFYLRL 291
Cdd:PRK08377  355 TEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 102-267 3.16e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.43  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 102 GLVPFHFWFPEVLQGSSLTTGLLLATA-MKLPPITLLLLTSHSLNP-----ILLTLMAITSTALGGWAGLNQTQIRKILA 175
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAplwwgVALLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 176 FSSISHLG--------WMTIILIYNPKLTLLTFY--LYCLMTIAIFFTL---------NTTKTLKLSTMMTAWTKIPALT 236
Cdd:PRK08042  275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKLGGIGKKMPVIS 354

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1917171632 237 ASLMLTLLSLAGLPPFTGFLPKWLIIQELTK 267
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
47-185 3.45e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  47 AVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHPASCLLLTTAISMKLGLV----------------PFHFWF 110
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 111 PEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLN--PILLTLMAITSTA---LGGWAGLNQTQIRKILAFSSISHLGWM 185
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEqfPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 96-262 3.70e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.13  E-value: 3.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  96 AISMKLGLVPFHFWFPEV-----LQGSSLTTGLLL---ATAMKLPPITLLLLTSHSLNPILLTlMAITSTALGGWAGLNQ 167
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLklgGYGLVRLSWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 168 TQIRKILAFSSISHLGWMTIILIYNPKLTL------------LTFYLYCLMTiaIFFTLNTTKTLK----LSTMMTAWTK 231
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLtgsifimlahgiVSSLLFILVT--ILYDRHHTRLIKyyrgLSITMPIWGT 395

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1917171632 232 IpaltasLMLTLLSLAGLPPFTGFLPKWLII 262
Cdd:MTH00226  396 I------MIVTSLANVAVPPSGNFIGEYLSI 420
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
50-263 4.01e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.92  E-value: 4.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  50 AATKYFLVQATASTLLLFSSMTNAWFTGQWD------ITQLTHPASCLLLTTAI----SMKLGLVPFHFWFPEVLQGSSL 119
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 120 TTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAIT-------STALGGWAGLNQTQIRKILAFSSISHLGWMTIILIYN 192
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAPGlaiigtiSVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 193 PKLTLLTFYLYCL---MTIAIFFTL--------NTTKTLKLSTMMTAWTKIPALTASLMLTLLSLAGLPPFTGFLPKWLI 261
Cdd:PRK07363  318 TQLSLLGAVAQMIshgLILALLFHLvgiverkvGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                  ..
gi 1917171632 262 IQ 263
Cdd:PRK07363  398 FQ 399
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 90-293 4.14e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 4.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  90 CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPILLTLMAIT-----STALGGWAG 164
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 165 LNQTQIRKILAFSSISHLGWMTIILiynpKLTLLTFYLYCLMTIAIFFTLnttktLKLS--TMMTAWT------KIPALT 236
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNHAFFKAL-----LFLSagSVIHALSdeqdmrKMGGLI 363

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171632 237 ASLMLTL-------LSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIITLLS-LLGLFFYLRLAY 293
Cdd:MTH00020  364 SFLPLTYiffligsLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIY 428
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 43-258 5.47e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.66  E-value: 5.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632  43 HHPRAVEAATKYFLVQATASTLLLFSSMTNAWFTGQWDITQLTHPASC--------LLLTTAISMKLGLV------PFHF 108
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 109 WFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-----ILLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLG 183
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGteawfILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171632 184 WMTIILIYNPK------LTLLTFYLY-------CLMTIA-IFFTLNTTKTLKLSTMMTAWTKIPALTASLmlTLLSLAGL 249
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLLnhatfkaCLFLVAgIVAHEAATRDIRKLGGLRKEMPITFIVASI--AALAMAGI 393


                  ....*....
gi 1917171632 250 PPFTGFLPK 258
Cdd:PRK12649  394 PPLNGFLSK 402
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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