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Conserved domains on  [gi|1917171624|gb|QOL11840|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Grallaria rufula rufula]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 1.75e-152

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 431.94  E-value: 1.75e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTG 80
Cdd:MTH00112    3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  81 QWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSA 160
Cdd:MTH00112   83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 161 ALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTA 240
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 241 TLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVN 320
Cdd:MTH00112  243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                         330       340
                  ....*....|....*....|...
gi 1917171624 321 TLTTTLMALTLVLLPLSPMTSTI 343
Cdd:MTH00112  323 TLTATLTTLSTLLLPLSPMILTI 345
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 1.75e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 431.94  E-value: 1.75e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTG 80
Cdd:MTH00112    3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  81 QWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSA 160
Cdd:MTH00112   83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 161 ALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTA 240
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 241 TLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVN 320
Cdd:MTH00112  243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                         330       340
                  ....*....|....*....|...
gi 1917171624 321 TLTTTLMALTLVLLPLSPMTSTI 343
Cdd:MTH00112  323 TLTATLTTLSTLLLPLSPMILTI 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-296 8.10e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.90  E-value: 8.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  12 ALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLF-SSMTNAwFTGQWDITQLTH 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  90 PMS------------CLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPT 150
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 151 LLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTLnttktLKLS 226
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVI-----LLLS 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 227 TMMTAWTKI----------PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 296
Cdd:COG1007   346 RKGGEAEEIedlaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 21-266 3.01e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  21 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL-----------T 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  89 HPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT------LLTLMAITSAAL 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWMTIII----IYNPKLTLLTFYLYCLMTITIF-----FTLNTTKTLKLSTMMTAWT 233
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171624 234 KIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQ 266
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-295 1.54e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  13 LGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP- 90
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  91 -----------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPTLL 152
Cdd:TIGR01770 193 sngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 153 TLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTL------NTTKT 222
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171624 223 LKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 295
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 1.75e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 431.94  E-value: 1.75e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTG 80
Cdd:MTH00112    3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  81 QWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSA 160
Cdd:MTH00112   83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 161 ALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTA 240
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 241 TLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVN 320
Cdd:MTH00112  243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                         330       340
                  ....*....|....*....|...
gi 1917171624 321 TLTTTLMALTLVLLPLSPMTSTI 343
Cdd:MTH00112  323 TLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 8-318 2.49e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 360.66  E-value: 2.49e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   8 IMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL 87
Cdd:MTH00135   10 LFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  88 THPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSlNPTLLTLMAITSAALGGWTG 167
Cdd:MTH00135   90 SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 168 LNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATLMLALL 247
Cdd:MTH00135  169 LNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILL 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1917171624 248 SLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 318
Cdd:MTH00135  249 SLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-338 1.86e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 355.77  E-value: 1.86e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTG 80
Cdd:MTH00070    3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  81 QWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSA 160
Cdd:MTH00070   83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 161 ALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTA 240
Cdd:MTH00070  163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 241 TLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVN 320
Cdd:MTH00070  243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTN 322

                         330
                  ....*....|....*...
gi 1917171624 321 TLTTTLMALTLVLLPLSP 338
Cdd:MTH00070  323 NLLSLTIILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 5.90e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 316.40  E-value: 5.90e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTG 80
Cdd:MTH00105    3 PLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  81 QWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSA 160
Cdd:MTH00105   83 QWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSI 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 161 ALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTA 240
Cdd:MTH00105  163 LIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTS 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 241 TLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPnSVNYMKL-WQ-TNKP 318
Cdd:MTH00105  243 LILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKMkWQfENTK 321

                         330       340
                  ....*....|....*....|....*
gi 1917171624 319 VNTLTTTLMALTLVLLPLSPMTSTI 343
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-343 5.07e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 275.69  E-value: 5.07e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTG 80
Cdd:MTH00200    3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  81 QWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSA 160
Cdd:MTH00200   83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 161 ALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTA 240
Cdd:MTH00200  163 LVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSM 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 241 TLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVN 320
Cdd:MTH00200  243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322

                         330       340
                  ....*....|....*....|...
gi 1917171624 321 TLTTTLMALTLVLLPLSPMTSTI 343
Cdd:MTH00200  323 LLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-320 7.64e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.84  E-value: 7.64e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   8 IMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL 87
Cdd:MTH00041   10 ITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGP 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  88 THPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSAALGGWTG 167
Cdd:MTH00041   90 LNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 168 LNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATLMLALL 247
Cdd:MTH00041  170 LNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSIL 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171624 248 SLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITL-PPNSVNYMKlWQTNKPVN 320
Cdd:MTH00041  250 SLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLfPQHSISLFS-WRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-317 2.25e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.57  E-value: 2.25e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   3 TKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGqw 82
Cdd:MTH00160    6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM-- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  83 ditqLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTShslNPTLLTLMAITSAAL 162
Cdd:MTH00160   84 ----LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATL 242
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171624 243 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCAtITLPPNSVNYMKLWQTNK 317
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNK 310
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-300 6.41e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.99  E-value: 6.41e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   4 KLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWD 83
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  84 ITqlthpmscLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNP-TLLTLMAITSAAL 162
Cdd:MTH00144   86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNtTKTLKLSTMMTAWTKIPSLTATL 242
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSI 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171624 243 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATI 300
Cdd:MTH00144  237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 10-308 1.60e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.02  E-value: 1.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  10 SLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSsMTNAWFTgqwdITQLTH 89
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----PSLLKN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  90 PMScLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSAALGGWTGLN 169
Cdd:MTH00011   89 ITA-LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 170 QTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATLMLALLSL 249
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171624 250 AGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYcATITLPPNSVN 308
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 10-296 8.74e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.19  E-value: 8.74e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  10 SLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMtnAWFTGQWditqlTH 89
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  90 PMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHslNPTLLTLMAITSAALGGWTGLN 169
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 170 QTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATLMLALLSL 249
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171624 250 AGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 296
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-296 8.10e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.90  E-value: 8.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  12 ALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLF-SSMTNAwFTGQWDITQLTH 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  90 PMS------------CLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPT 150
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 151 LLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTLnttktLKLS 226
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVI-----LLLS 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 227 TMMTAWTKI----------PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 296
Cdd:COG1007   346 RKGGEAEEIedlaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 11-294 1.46e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.42  E-value: 1.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  11 LALGTTITVSSNHWMMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLVQATASALLLFS-------------SMTNA 76
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  77 WFTGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNptLLTLMA 156
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 157 ITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII----IYNPKLTLLTFYLYCLMTITIF---FTLNTTKTLkLSTMM 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171624 230 TAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 294
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 21-266 3.01e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  21 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL-----------T 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  89 HPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT------LLTLMAITSAAL 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWMTIII----IYNPKLTLLTFYLYCLMTITIF-----FTLNTTKTLKLSTMMTAWT 233
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171624 234 KIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQ 266
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
12-294 3.81e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.51  E-value: 3.81e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  12 ALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP 90
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  91 ------------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLP-------PITLLLLTSHSLNPTL 151
Cdd:PRK05777  193 ladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafavllrLLVVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 152 LTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIF-FTLNTTKTLKLS 226
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgVISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171624 227 TMMTAWTKI----PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 294
Cdd:PRK05777  353 ESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-295 1.54e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  13 LGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP- 90
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  91 -----------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPTLL 152
Cdd:TIGR01770 193 sngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 153 TLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTL------NTTKT 222
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171624 223 LKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 295
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-294 1.83e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 1.83e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   8 IMSLALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDI-- 84
Cdd:MTH00199  103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  85 --TQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTlmAITSAAL 162
Cdd:MTH00199  183 inSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGW----MTIIIIYNPKLTLLTFYLYCLMTITIFF---TLNTTKTLkLSTMMTAWTKI 235
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSiilSLKLTKGL-IVEVSGLSRKN 339

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171624 236 PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 294
Cdd:MTH00199  340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-294 2.34e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.50  E-value: 2.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  11 LALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP 90
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  91 MS----------CLLLTTAISMKLGLAPFHFWFPE-----------VLqgSSLTTGLLLATTMKLPPITLLLLTSHSLNP 149
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLL--SGLLTKVGVYAILRVLTLLFGADPALFLGT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 150 TLLTLmAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII-IYNPK-LTLLTFYL--YCLMTITIFFT----LNTTK 221
Cdd:COG0651   274 LLLVL-GLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATG 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171624 222 TLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 294
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 1-300 1.40e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.59  E-value: 1.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624   1 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAI---------EAATKYFLVQATASALLLFS 71
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  72 SMTNAWFTGQ--------------WDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPI 137
Cdd:MTH00198  267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 138 TLLLLTSHSLNptLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII-------IYNPKLTLLTFYLYCLMT 210
Cdd:MTH00198  347 ILLTSLVITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALAS 424

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 211 ITIFFTL------------------NTTKTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQE 272
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1917171624 273 MTPTATIIALLSLLGL-------FFYLRLAycATI 300
Cdd:MTH00198  505 FSSSLSIYYLVALFAIictcisaFYYIRIV--ATI 537
ndhB CHL00049
NADH dehydrogenase subunit 2
 49-294 1.17e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.41  E-value: 1.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  49 RAIEAATKYFLVQATASALLL--FSsmtnaWFTGQ-------WDI------TQLTHPMSCLL----LTTAISMKLGLAPF 109
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 110 HFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT-------LLTLMAITSAALGGWTGLNQTQVRKILAFSSI 182
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 183 SHLGWMTIIII-------YNPKLTLLTFYLycLMTI-----TIFFTLNtTKTLKLSTMMTAWTKIPSLTATLMLALLSLA 250
Cdd:CHL00049  314 GQIGYVIIGIIvgdsndgYASMITYMLFYI--FMNLgtfacIVLFGLR-TGTDNIRDYAGLYTKDPFLALSLALCLLSLG 390

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1917171624 251 GLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 294
Cdd:CHL00049  391 GIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
48-261 1.34e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.29  E-value: 1.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  48 PRAIEAATKYFLVQATASALLLF-SSMTNAWFTGQWDITQLTHPM----------SCLLLTTAISMKLGLAPFHFWFPEV 116
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitspslglalALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 117 LQGSSLTTGLLLATTMKLPPITLLLLTSHSLNP-------TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMT 189
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 190 IIIIYNPK--LTLLTFYL--YCLM-----TITIFFTLNTtKTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLP 260
Cdd:PRK02504  317 IGLVAGTEagYASMVFYLlaYLFMnlgafACVILFSLRT-GTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395


                  .
gi 1917171624 261 K 261
Cdd:PRK02504  396 K 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-308 4.87e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 4.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  31 LEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFS-SMTNAwFTGQWDITQLTH--PMSCLLLT------TAIS 101
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 102 MKLGLAPFHFWFPEVLQGSSLTTGLLLATT-------MKLPPITLLLLTSHSLNPTLLTLMAITSAA---LGGWTGLNQT 171
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLvtkvavyALIRIYFTVFGGDFRFALGLGWLLAVLALLsmlVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 172 QVRKILAFSSISHLGWMTIIIIYNPKLTLL--TFYL--YCLMTITIFFTLN----TTKTLKLSTMMTAWTKIPSLTATLM 243
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171624 244 LALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVN 308
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE 438
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-311 3.43e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.64  E-value: 3.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  31 LEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFS---------SMTNAWFTGQWDITQLTHPMSCL-LLTTA 99
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 100 ISMKLGLAPFHFW----FPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT----LLTLMAITSAALGGWTGLNQT 171
Cdd:PRK08376  230 LAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 172 QVRKILAFSSISHLGWMTI---IIIYNPKLTLLTFYLYCLMTITIFFTLN-----------------TTKTLKLSTMMTA 231
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNELGGL 389

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 232 WTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIIALL-SLLGLFFYLRLAYcaTITLPPNSVNYM 310
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPPSEKVM 465


                  .
gi 1917171624 311 K 311
Cdd:PRK08376  466 N 466
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 32-296 1.67e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.53  E-value: 1.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  32 EINTLAILPLISKPHHpRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHPMS-----------CLLLTTAI 100
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivFLFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 101 SMKLGLAPFHFWFPE-----------VLQGS-------SLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITsAAL 162
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgayGFLLVLYVLPGTKLFSEFGTYRGVPLFNYILAWLGNIS-IIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWmtiIIIYNPKLTLLTF-------YLYCLMTITIFFTLNT----TKTLKLSTMMTA 231
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMGGL 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171624 232 WTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 296
Cdd:PRK08668  363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 149-296 2.86e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 2.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 149 PTLLTLMAITSAA---LGGWTGLNQTQVRKILAFSSISHLGWMTIIIiynpKLTLLTFYLYCLMTITIFftlnttktlKL 225
Cdd:COG1009   272 PVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFF---------KA 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 226 STMMTA------------------WTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQE-LTKQEMTPTATIIALL-SL 285
Cdd:COG1009   339 LLFLGAgsvihatgtrdirkmgglRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAF 418

                         170
                  ....*....|.
gi 1917171624 286 LGLFFYLRLAY 296
Cdd:COG1009   419 LTAFYSFRLFF 429
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 150-287 5.96e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.91  E-value: 5.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 150 TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLY----CLMTITIFFTLNT----TK 221
Cdd:PRK12647  260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTG 339

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171624 222 TLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTkqEMTPTATIIALLSLLG 287
Cdd:PRK12647  340 TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 90-269 1.72e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  90 PMSCLLLTTAI--SMKLGLapfHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT-----SAAL 162
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYL--YCLMTITIFFTLN------TTKTLKLSTMMTAWTK 234
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1917171624 235 IPSLTATLMLALLSLAGLPPLTGFLPKWLIIqELT 269
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-269 3.11e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  31 LEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTH--PMSCLLLTTAISMKLGLAP 108
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 109 FHFWFPEVLQGS-SLTTGLLLATTMKLPPITLLLLTSHSLNPTL-LTLMAITSAALGGWTGLNQTQVRKILAFSSISHLG 186
Cdd:PRK07234  203 SGLWLPLTHSEAePPVSALLSGVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 187 WmtiiIIYNPKLTLLTFYLYCLMTITIFFTLNT----TKTLKLSTMMTAWTKIPsltatLMLALLSLAGLPPLTGFLPKW 262
Cdd:PRK07234  283 F----ILAAPLVGGLYALAHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 1917171624 263 LIIQELT 269
Cdd:PRK07234  354 LTLKNLL 360
PRK12650 PRK12650
DUF4040 family protein;
96-302 1.55e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  96 LTTAISMKLGLA--------PFHFWFPEVLQGSSLTTGLLLATTM-KLPPITLLLLTSHSLNPT----LLTLMAITSAAL 162
Cdd:PRK12650  206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVvKAGIYLLLRFSPVFHDVAvwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 163 GGWTGLNQTQVRKILAFSSISHLGWM-TIIIIYNP-KLT--LLTFYLYCLMTITIFFTL----NTTKTLKLSTMMTAWTK 234
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171624 235 IPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMtPTATIIALLSLLGLFFYLRLAYCATITL 302
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 11-192 1.71e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  11 LALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATA------SALLLFSSMTNAWFTGQWDI 84
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  85 TQLTHP----------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT---- 150
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1917171624 151 ----LLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII 192
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 149-282 2.70e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.52  E-value: 2.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 149 PTLLTLMAITsAALGGWTGLNQTQVRKILAFSSISHLGWMTIII-IYNPKLTLLTFYLYC---LMTITIFFTL----NTT 220
Cdd:PRK12644  268 PTVLVLGLAT-MLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAALFLVVgiidHST 346

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171624 221 KTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIAL 282
Cdd:PRK12644  347 GTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVL 408
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
150-296 3.13e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 3.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 150 TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTI-IIIYNPK-LTLLTFYLYCLMTIT--IFFTLNTTKTL-- 223
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVVKtaLFLIAGSLVRLtg 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171624 224 --KLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTPTATIIA--LLSLLGLFFYLRLAY 296
Cdd:PRK12663  353 yrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLItsLITMYSLFRIFFLAY 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 47-190 3.62e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.91  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  47 HPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQW--DITQLT-HPMS-------CLLLTTAISMKLGLAPFHFWFPEV 116
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 117 L-QGSSLTTGLLLATTMKL-------PPITLLLLTSHSLNPTLLTLmAITSAALGGWTGLNQTQVRKILAFSSISHLGWM 188
Cdd:COG1008   236 HvEAPTAGSVLLAGVLLKMggygllrFALPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1917171624 189 TI 190
Cdd:COG1008   315 LL 316
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 150-265 5.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 5.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 150 TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCL----------MTI-TIFFTLN 218
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsivksalfMVSgSISYHFG 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171624 219 TTKTLKLSTMmtaWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLII 265
Cdd:PRK12662  360 TTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-286 9.43e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 37.61  E-value: 9.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624  48 PRAIEAATKYFLVQATASALLLFSSMTNAWFTGQ-WDITQL-THPMSC-------LLLTTAISMKLGLAPFHFWFPEVLQ 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 119 GSSLTTGLLLATTMKLPPITLLLLTSHSLNP-------TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTII 191
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171624 192 IIYNPKLTLL--TFYLYC--LMTITIFFTLNT----TKTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWL 263
Cdd:TIGR01972 312 IFSFNELGISgaVFQMIShgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250       260
                  ....*....|....*....|...
gi 1917171624 264 IIQELTKqeMTPTATIIALLSLL 286
Cdd:TIGR01972 392 ILLGSFK--VNPVVAFLAALGIV 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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