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Conserved domains on  [gi|1916859098|gb|QOL00855|]
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NADH dehydrogenase subunit 2 [Notostaurus albicornis albicornis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 5.87e-99

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 295.58  E-value: 5.87e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   1 MNNNSTKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  81 KFTISWekqMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVnILSILI 160
Cdd:MTH00160   81 NLMLFN---NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIII-ILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 241 FLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTMLILP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1916859098 321 FMVMISTMGLICSSTLTSL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 5.87e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 295.58  E-value: 5.87e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   1 MNNNSTKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  81 KFTISWekqMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVnILSILI 160
Cdd:MTH00160   81 NLMLFN---NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIII-ILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 241 FLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTMLILP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1916859098 321 FMVMISTMGLICSSTLTSL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 6.08e-30

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 115.49  E-value: 6.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  24 SNSWLGVWMGLEINLLSFIPMLTNNMN-MMMNESAIKYFIVQAMASTMLLFSILLI--------------QMKFTISWEK 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  89 QMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLIL-MTWQKIAPMMVL-------SYCIQMSMFIFLVNILSILI 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIV----SENVWELYFLTYSLLSVILILMFKSMNLSM-----LNQIYSAGN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRvhtrnIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1916859098 232 MKTEIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 1.66e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.13  E-value: 1.66e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   8 LLFLSTLlmGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMM-NESAIKYFIVQAMASTMLLF----------SIL 76
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRsSEAALKYFLLGALSSGFLLYgisllygatgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  77 LIQMKFTISWEKQ-----MISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVL---------SY 142
Cdd:COG1007   185 LAGIAAALAAGGAnspllLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 143 CIQMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIV-SENVWE---LYFLTYSLlsvililmfksM 218
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLF-----------M 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 219 NL---SMLNQIYSAGNMKTEIK-------------FMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLT 282
Cdd:COG1007   334 NLgafAVILLLSRKGGEAEEIEdlaglarrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNS 413

                         330
                  ....*....|
gi 1916859098 283 TITLYYYLRI 292
Cdd:COG1007   414 VISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-292 1.74e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  15 LMGTILSISSNSWLGVWMGLEI-NLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLI----------QMKFT 83
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  84 ISWEKQMISSM-----MIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIA---PMMVLSYCIQMSM------F 149
Cdd:TIGR01770 192 LSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFseawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 150 IFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGW-MISSLIVSENVWE---LYFLTYSLLSVILILMFKSMNLSMLNQ 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1916859098 226 IYSAGNMKTEIK------FMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 5.87e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 295.58  E-value: 5.87e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   1 MNNNSTKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  81 KFTISWekqMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVnILSILI 160
Cdd:MTH00160   81 NLMLFN---NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIII-ILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 241 FLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTMLILP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1916859098 321 FMVMISTMGLICSSTLTSL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-340 2.79e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 209.70  E-value: 2.79e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   8 LLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQM---KFTI 84
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  85 SWEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVL---SYCIQMSMFIFLvNILSILIG 161
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTL-AILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 162 AMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMF 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 242 LTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFS-ALILSYTENSWSMSI--KNEKTMLI 318
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWqfENTKPMTL 325

                         330       340
                  ....*....|....*....|..
gi 1916859098 319 LPFMVMISTMGLICSSTLTSLY 340
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-340 4.33e-63

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 204.01  E-value: 4.33e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   3 NNSTKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSIlLIQMKF 82
Cdd:MTH00041    2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGA-LIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  83 TISW----EKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQM--SMFIFLVNIL 156
Cdd:MTH00041   81 SGSWsingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLlnSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 157 SILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEI 236
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 237 KFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENS-----WSMSIK 311
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1916859098 312 NEKTMLILPFMVMISTMGLICSSTLTSLY 340
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-339 6.60e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 203.52  E-value: 6.60e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   6 TKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILlIQMKFTIS 85
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSST-TNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  86 WE-KQM---ISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQM--SMFIFLVNILSIL 159
Cdd:MTH00112   84 WDiTQLtnpTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSlnPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 160 IGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFM 239
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 240 MFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSyTENSWSMSIK---NEKTM 316
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITL-PPNTTNMMMKwrtKPKKN 322

                         330       340
                  ....*....|....*....|...
gi 1916859098 317 LILPFMVMISTMGLICSSTLTSL 339
Cdd:MTH00112  323 TLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-340 1.89e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 199.76  E-value: 1.89e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  10 FLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILL---IQMKFTISW 86
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  87 EKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLsycIQMS-----MFIFLVNILSILIG 161
Cdd:MTH00070   89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQIShllnsNLLIIMGLLSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 162 AMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMF 241
Cdd:MTH00070  166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 242 LTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSY--TENSWSMSIKNEKTMLIL 319
Cdd:MTH00070  246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNLL 325

                         330       340
                  ....*....|....*....|.
gi 1916859098 320 PFMVMISTMGLICSSTLTSLY 340
Cdd:MTH00070  326 SLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-339 4.33e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 188.47  E-value: 4.33e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   9 LFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLF-SILLIQMkfTISWE 87
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFaSTTNAWL--TGQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  88 KQMIS----SMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLsycIQMS-----MFIFLvNILSI 158
Cdd:MTH00135   86 IQQMShplpTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI---LQIAptnptLLITL-GLTST 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 159 LIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKF 238
Cdd:MTH00135  162 LVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 239 MMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFS-ALILSYTENSWSMS--IKNEKT 315
Cdd:MTH00135  242 LTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAmTLTISPNTLNGTTPwrLPSTQL 321

                         330       340
                  ....*....|....*....|....
gi 1916859098 316 MLILPFMVMISTMGLICSSTLTSL 339
Cdd:MTH00135  322 TLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 6-339 1.14e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 179.78  E-value: 1.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   6 TKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKFTIS 85
Cdd:MTH00200    5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  86 WEKQMISSMMIWS---SLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLS--YCIQMSMFIFLVNILSILI 160
Cdd:MTH00200   85 GISEMLGPLSETLillALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMM 240
Cdd:MTH00200  165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 241 FLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTM--LI 318
Cdd:MTH00200  245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNsnLL 324

                         330       340
                  ....*....|....*....|.
gi 1916859098 319 LPFMVMISTMGLICSSTLTSL 339
Cdd:MTH00200  325 VGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-328 1.96e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 178.33  E-value: 1.96e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   9 LFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKFTISwek 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLS--- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  89 qMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVNILSILIGAMGGLNQ 168
Cdd:MTH00197   79 -LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 169 TSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMFLTMLSLG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 249 GLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTMLILPFMVMISTM 328
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-337 2.49e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 175.46  E-value: 2.49e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   7 KLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKFTISW 86
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  87 ekqmiSSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCI---QMSMFIFLVNILSILIGAM 163
Cdd:MTH00144   86 -----SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVGSI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 164 GGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMFLt 243
Cdd:MTH00144  161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL- 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 244 MLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYtenswSMSIKNEKTMLILPFMV 323
Cdd:MTH00144  240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSS-----KSKKSNSSKVLNSSIIS 314

                         330
                  ....*....|....
gi 1916859098 324 MISTMGLICSSTLT 337
Cdd:MTH00144  315 LNLLGGLLFLLLYL 328
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-320 6.89e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 166.88  E-value: 6.89e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   6 TKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKFTIS 85
Cdd:MTH00011    7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  86 wekQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYC--IQMSMFIFLVNILSILIGAM 163
Cdd:MTH00011   87 ---KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 164 GGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMFLT 243
Cdd:MTH00011  164 GGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIM 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1916859098 244 MLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTMLILP 320
Cdd:MTH00011  244 LLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILIS 320
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 6.08e-30

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 115.49  E-value: 6.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  24 SNSWLGVWMGLEINLLSFIPMLTNNMN-MMMNESAIKYFIVQAMASTMLLFSILLI--------------QMKFTISWEK 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  89 QMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLIL-MTWQKIAPMMVL-------SYCIQMSMFIFLVNILSILI 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIV----SENVWELYFLTYSLLSVILILMFKSMNLSM-----LNQIYSAGN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRvhtrnIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1916859098 232 MKTEIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 1.66e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.13  E-value: 1.66e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   8 LLFLSTLlmGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMM-NESAIKYFIVQAMASTMLLF----------SIL 76
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRsSEAALKYFLLGALSSGFLLYgisllygatgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  77 LIQMKFTISWEKQ-----MISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVL---------SY 142
Cdd:COG1007   185 LAGIAAALAAGGAnspllLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 143 CIQMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIV-SENVWE---LYFLTYSLlsvililmfksM 218
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLF-----------M 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 219 NL---SMLNQIYSAGNMKTEIK-------------FMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLT 282
Cdd:COG1007   334 NLgafAVILLLSRKGGEAEEIEdlaglarrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNS 413

                         330
                  ....*....|
gi 1916859098 283 TITLYYYLRI 292
Cdd:COG1007   414 VISAYYYLRV 423
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 3.90e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 108.37  E-value: 3.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   8 LLFLSTLLmGTILSISSNSWLGVWMGLEI-NLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLI-----QMK 81
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgSLS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  82 FTISWEKQMISS----------MMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVL---------SY 142
Cdd:PRK05777  186 FAGIAKALADGSgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGL 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 143 CIQMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVS-----ENVWeLYFLTYSLLS-----VILI 212
Cdd:PRK05777  266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGtaegySAVL-FYLLAYLFMTlgafgVISL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 213 LMFKSMNLSMLNQIysAGNMKTE--IKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYL 290
Cdd:PRK05777  345 LRRKGGEAESISDF--AGLSKRSplLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422


                  ..
gi 1916859098 291 RI 292
Cdd:PRK05777  423 RV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 14-292 4.63e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 103.96  E-value: 4.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  14 LLMGTILSISSNSWLGVWMGLEINLLS-FIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSI----------------L 76
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  77 LIQMKFTISWEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVNIL 156
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 157 SILIGAMGGLNQTSLKQILAYSSISHLGWMISSL----IVSENVWELYFLTYSLLS--VILILMFKSMNLSMLNQIYSAG 230
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSicVFSIILALNVYKNLIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1916859098 231 NMKTEIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 14-292 1.09e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.17  E-value: 1.09e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  14 LLMGTILSISSNSWLGVWMGLEINLLS-FIPMLTNNMNMMMNESAIKYFIVQAMASTMLLF------------SILLIQM 80
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFgcallygltgetSIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  81 KFTISWEKQMISSmmiwsSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVNILSILI 160
Cdd:MTH00199  186 ILTGDVGKILITI-----SLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 161 GAMGGLNQTSLKQILAYSSISHLGWMISSLIVSEN----VWELYFLTYSLLSVILILMFKSMNLS--MLNQIYSAGNMKT 234
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNP 340

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859098 235 EIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:MTH00199  341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-292 1.74e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  15 LMGTILSISSNSWLGVWMGLEI-NLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLI----------QMKFT 83
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  84 ISWEKQMISSM-----MIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIA---PMMVLSYCIQMSM------F 149
Cdd:TIGR01770 192 LSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFseawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 150 IFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGW-MISSLIVSENVWE---LYFLTYSLLSVILILMFKSMNLSMLNQ 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1916859098 226 IYSAGNMKTEIK------FMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 3.26e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 85.68  E-value: 3.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  16 MGTILSISSNSWLGVWMGLEINLLSFIPM---------LTNNMNMMMNESAIKYFIVQAMASTMLLF------------- 73
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  74 ---SILLIQMKFT-ISWEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMF 149
Cdd:MTH00198  279 mlgTILSATLETTnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 150 IFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMIssLIVSENVWELYFLTYSLLSVILILMFKSMN----LSMLNQ 225
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL--IGVSAGTYESLQASWTYAVTYLVSALASFTvictLEEFGT 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 226 IYSAGNMKTE-----------------------IKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTI----- 277
Cdd:MTH00198  437 RTPTSRQRDGsfgnynlvrrlvdltilsrgqpyIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylva 516

                         330
                  ....*....|....*..
gi 1916859098 278 --MVVLTTITLYYYLRI 292
Cdd:MTH00198  517 lfAIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 1.20e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.41  E-value: 1.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  10 FLSTLLMGTILSISSNSWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKF------- 82
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgtlnmad 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  83 ------TISWEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMS-ASSWINCL------------ILMTWQKIAPMMVLSYc 143
Cdd:COG0651   192 laarlaELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALlsglltkvgvyaILRVLTLLFGADPALF- 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 144 iqMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSL-IVSENVWE--LYFLTYS--------LLSVILI 212
Cdd:COG0651   271 --LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgaLFHLLNHalakallfLAAGAIE 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 213 LMFKSMNLSMLNQIYSagNMKTeIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:COG0651   349 RATGTRDLDKLGGLGK--RMPL-TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-292 1.14e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.04  E-value: 1.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  34 LEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKfTISWEKQMISSM------------MIWSSLL 101
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGV-TGTLNMADLAGAlaenptvvtafgFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 102 LKIGAAPFHFWFPEVMS-ASSWINCLILMTWQKIAPMMVL---------SYCIQMSMFIFLVNI--LSILIGAMGGLNQT 169
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPaAPPVVTALLSGLVTKVAVYALIriyftvfggDFRFALGLGWLLAVLalLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 170 SLKQILAYSSISHLGWMISSL-IVSENVWE---LYFLTYSLLSVILIlmfksMNLSMLNQIYSAGNMKTEIKFM--MFLT 243
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLaLLTPLALAaglLHLLHHALMKGALF-----LAAGAIEVTYGTRRLSELSGLGrrMPLT 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859098 244 M-------LSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:PRK08375  369 AaafavasLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-296 3.23e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.72  E-value: 3.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  55 ESAIKYFIVQAMASTMLLFSILL--------------IQMKFTISwEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSAS 120
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALlygqygtlnmaylaVKMSENPT-VVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAA 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 121 -SWINCLILMTWQ----KIAPMMVLSYCIQMSM-----FIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSL 190
Cdd:PRK08376  251 pSSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGL 330

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 191 IVSENVWEL--------------------YFLTYSLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMFLTMLSLGGL 250
Cdd:PRK08376  331 GVGLAALGDpamasygeialaggiyhivnHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGL 410

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1916859098 251 PPFLGFLPKWIVIQMLIENNmTTIMTIMVVLTTITLYYYLRISFSA 296
Cdd:PRK08376  411 PPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTA 455
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
55-307 1.15e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.13  E-value: 1.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  55 ESAIKYFIVQAMASTMLLFSILLIQMKFTISWEKQMISSMMIWSSLLL--------------KIGAAPFHFWFPEVMSAS 120
Cdd:PRK02504  161 EAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAIALALITSPSLGlalalvfviagiafKISAVPFHQWTPDVYEGS 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 121 SWINCLILMTWQKIA----PMMVLSYCI----QMSMFIFLV-NILSILIGAMGGLNQTSLKQILAYSSISHLGW-MISSL 190
Cdd:PRK02504  241 PTPVVAFLSVGSKAAgfalAIRLLVTAFpsfdEQWKLLFTAlAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMIGLV 320

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 191 IVSENVWE---LYFLTY---SLLSVILILMFKSMNLSmlNQI--YSAGNMKTE-IKFMMFLTMLSLGGLPPFLGFLPKWI 261
Cdd:PRK02504  321 AGTEAGYAsmvFYLLAYlfmNLGAFACVILFSLRTGT--DQIsdYAGLYQKDPlLTLGLSLCLLSLGGIPPLAGFFGKIY 398

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859098 262 VIQMLIENNMTTIMTIMVVLTTITLYYYLRI----------SFSALILSYTENSWS 307
Cdd:PRK02504  399 LFWAGWQAGLYLLVLVGLVTSVISIYYYIRVikmmvvkepqEMSDVVKNYPEINWN 454
ndhB CHL00049
NADH dehydrogenase subunit 2
 87-292 1.24e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 53.08  E-value: 1.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  87 EKQMISSMMIWSSLLL-------KIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMM--------VLSYCIQMSMFIF 151
Cdd:CHL00049  204 NTQMYNSPGISIALIFitvgigfKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLL 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 152 -LVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSenvwELYFLTYSLLSVILILMFksMNLSMLNQI---- 226
Cdd:CHL00049  284 eILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVG----DSNDGYASMITYMLFYIF--MNLGTFACIvlfg 357

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1916859098 227 ----------YSAGNMKTEI-KFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:CHL00049  358 lrtgtdnirdYAGLYTKDPFlALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK12650 PRK12650
DUF4040 family protein;
108-298 2.51e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 52.35  E-value: 2.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 108 PFHFWFPEVMSASSWINC-LILMTWQKIAPMMVLSYCIQMS------MFIFLVNILSILIGAMGGLNQTSLKQILAYSSI 180
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAfLHAAAVVKAGIYLLLRFSPVFHdvavwnWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 181 SHLGWMISSLIVSENvwelYFLTYSLLSVILILMFKSmNLSMLNQI--YSAGN----------MKTEIKF-MMFLTMLSL 247
Cdd:PRK12650  306 SQLGWIVATIGVGTP----FALTAAVVHTLAHALFKS-SLFMLIGVvdHQAGTrdirrlgslwRRMPFTFvSVTIAALSM 380

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859098 248 GGLPPFLGFLPKWIVIQMLIE----NNMTTIMTIMVVLTTI-TLYYYLRISFSALI 298
Cdd:PRK12650  381 AAVPPLFGFVSKEGMLTAFLEapggNAGVVLLLVGAALGAVfTFAYSARLVLGAFV 436
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
147-296 4.66e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 51.10  E-value: 4.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 147 SMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENV---WELYFLTYS--------LLSVILILMF 215
Cdd:PRK12663  272 HPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAginGAIFYLVHDmvvktalfLIAGSLVRLT 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 216 KSMNLSMLNQIYSAGNMKTEIKFMMFLtmlSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFS 295
Cdd:PRK12663  352 GYRSLQYLGGLYRKEPLFGALFLILIF---AIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFL 428


                  .
gi 1916859098 296 A 296
Cdd:PRK12663  429 A 429
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 56-294 5.32e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 51.31  E-value: 5.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  56 SAIKYFIVQAMASTMLLFSILLIQMKF-TISW-------EKQMISSMMIWSSLLLKIGAA------PFHFWFPEVMSASS 121
Cdd:COG1009   163 AARKAFLVTRVGDLGLLLGILLLGAIAgTLNFsellaaaPTILSSPLLTLILLLLLLGAFgksaqfPLHFWLPDAMEGPT 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 122 WINCLI-----------LMTwqKIAPMMVLSYCIQMsmFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSL 190
Cdd:COG1009   243 PVSALLhaatmvkagvyLLA--RLSPLFALSPVWLT--VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 191 IVSENVWELYFL-TYSLLSVILILMFKSMNLSMLNQ-IYSAGNMKTEIKF---MMFLTMLSLGGLPPFLGFLPKWIVIQM 265
Cdd:COG1009   319 GVGAYVAALFHLlTHAFFKALLFLGAGSVIHATGTRdIRKMGGLRKKMPItaiTFLIGALSLAGIPPFAGFFSKEAILEA 398

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1916859098 266 LIE-NNMTTIMTIMVVLT-TITLYYYLRISF 294
Cdd:COG1009   399 ALEaGGLGPLLLAVALLGaFLTAFYSFRLFF 429
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-336 1.03e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.20  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   2 NNNSTKLLFLSTLLMGTILSISSNsWLGVWMGLEINLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLF-SILLIQM 80
Cdd:PRK06589  114 SSSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpAVILIYT 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  81 KF--------TISWEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASSWINCLI---------LMTWQKIAPMM----V 139
Cdd:PRK06589  193 KTgnldfvsgGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsY 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 140 LSYCIQMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIV----SENVWELYFLTYSLLSVILILMF 215
Cdd:PRK06589  273 LQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltpkALGAAILHLVSHSFAKICLFYSM 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 216 KSMNLSM----LNQIYSAGNMKTEIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTT---IMTIMVVLTTITL-Y 287
Cdd:PRK06589  353 GSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsiIVMLVVIASSILSaL 432

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1916859098 288 YYLRISFSALILSYTENSwsmSIKNektmlILPFMVMISTMGLICSSTL 336
Cdd:PRK06589  433 YLLKILSSIYKPSLSENS---FITK-----SLPYLMQISVITCCCALTL 473
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 95-296 1.14e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 49.95  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  95 MIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMS----MFIFLVNILSILIGAMGGLNQTS 170
Cdd:PRK07234  189 LIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVpgldLIVRIFGVGTALLGVLFALLEKD 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 171 LKQILAYSSISHLGWMISSLIVSenvwELYFLTYSLLSVILILM---FKSMNLSMLNQiysagnMKTEIKFMMFLTM--L 245
Cdd:PRK07234  269 LKRMLAFSTISQLGFILAAPLVG----GLYALAHGLVKSTLFLCagaLPSRNFTELIS------QMLGIGKWIPLTMasF 338

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1916859098 246 SLGGLPPFLGFLPKWIVIQMLIENNMtTIMTIMVVLTTITLYYYLRISFSA 296
Cdd:PRK07234  339 SIAGFPLLAGFVSKVLTLKNLLPWQA-IALNLAAVGTAASFWKFIFLPFSA 388
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-332 1.39e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 49.58  E-value: 1.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  55 ESAIKYFIVQAMASTMLLFSILLIQMKF-------------------------TISWEKQMISSMMIWSsLLLKIGAAPF 109
Cdd:PRK12667  164 EAAIKYALIGAVGTTLYFLALAFLYATFgtlnmadlsakirglsfpltgglagNPPLALGVALALALWA-FTIKAAIFPN 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 110 HFWFPEVMS-ASSWINC-------------LILMTWQKIAPMMVLSYCIQMSMFIFLV-NILSILIGAMGGLNQTSLKQI 174
Cdd:PRK12667  243 HFWLPDAHPaAPSPVSAmlsglvvnvgayaIIRFLYTIFGISPSLIDFRAALSPILIIlGAVSAIIGALMMVVQKDVKRL 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 175 LAYSSISHLGWMISSLIVSENVWELYFLTY--------SLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMFLTMLS 246
Cdd:PRK12667  323 LAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhaiakSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALS 402

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 247 LGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRISFSaLILSYTENSWSMSIKNEKTM--LILPFMVM 324
Cdd:PRK12667  403 LVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS-LFFGKPKSGEEVEHKESPSMsvVILVLALA 481


                  ....*...
gi 1916859098 325 ISTMGLIC 332
Cdd:PRK12667  482 VLILGILA 489
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-292 7.83e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 47.68  E-value: 7.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   1 MNNNSTKLLFLSTLLMGTILSISSNSWLGVWMGLEINLLSFIpMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQM 80
Cdd:PRK08668   94 TKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYA 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  81 KF--------------TISWEKQMISSMMIWSSLLLKIGAAPFHFWFPEVMSASS-------------------WINCLI 127
Cdd:PRK08668  173 KTgtfdfadisqglinDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygfLLVLYV 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 128 LMTWQKIAPMMVLSYCIQMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWelyfLTYSLL 207
Cdd:PRK08668  253 LPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLG----FAGGLF 328

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 208 SVILILMFKSMN-LSMLNQIYSAGnmKTEIK-------------FMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTT 273
Cdd:PRK08668  329 HVFNHALFKGLFfLIFAAVIYRTG--TTKISemggliekmpftfAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPI 406

                         330
                  ....*....|....*....
gi 1916859098 274 IMTIMVVLTTITLYYYLRI 292
Cdd:PRK08668  407 TAFMAFFGSIGSFLYVFRP 425
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 95-325 7.85e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 46.79  E-value: 7.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  95 MIWSSLLLKIGAAPFHFWFPEVMSASSWINCLILMTWQKIAPMMVLSYCIQMSMFIFLVNILSILIGAMggLNQTSLKQI 174
Cdd:MTH00091   62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 175 LAYSSISHLGWMISSLIVSENVWELYFLTYSLLSVILILMFKSMNLsmlnqiysagnmkteIKFMMFLTMLSLGGLPPFL 254
Cdd:MTH00091  140 LILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNK---------------LNFVSWETLLVFMNLPFSV 204

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1916859098 255 GFLPKWIVIQMLiennMTTIMTIMVVLTTITLYYYLRISFSALILSYTENSWSMSIKNEKTMLILPFMVMI 325
Cdd:MTH00091  205 TFFVKIFSLSEI----LKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-187 7.73e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.16  E-value: 7.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  56 SAIKYFIVQAMASTMLLFSILLIQMKFTISW------EKQMISSMMIWSSLLLKIGAA------PFHFWFPEVMSASSWI 123
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdllellNLPLPFGVQTWLFLAFFIAFAvkvplfPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1916859098 124 NCLILM-TWQKIAPMMVLSYCIQM--------SMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMI 187
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-264 1.80e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.03  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 145 QMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSeNVWELYFLTYSLLSVILI---------LMF 215
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALS-TVAGLSGAIYYVAHHITVqttlflvvgLIE 349

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1916859098 216 KSMNLSMLNQIYSAGNMKTEIKFMMFLTMLSLGGLPPFLGFLPKWIVIQ 264
Cdd:PRK12665  350 RQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
55-295 4.08e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 4.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  55 ESAIKYFIVQAMASTMLLFSILL------------IQMKFTISWEKQMI--SSMMIWSSLLLKIGAAPFHFWFPEVMSAS 120
Cdd:PRK06277  150 KAALKYMILGNVAGSILLLGIGFllastgtlnitdIHNALLVNPTSPVIygGLLLLIFGLLYGSGLPPFHTIKSDIYAKA 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 121 SWINCLILMTWQK---IAPMMV-------LSYCIQMSMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSL 190
Cdd:PRK06277  230 KPFGSALLQTFSKfvlVALMLVifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 191 -------IVSENVWELYFLTY-SLLSVILILMFKSMNLSMLNQIYSAGNMKTEIKFMMFLTMLSLGGLPPFLGFLPKWIV 262
Cdd:PRK06277  310 algtplgIVAGIFHAINHVIYkSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1916859098 263 IQMLIENNMTTIMTIMVVLTTITLYYYLRISFS 295
Cdd:PRK06277  390 AQAAMQANMPELAIIMIIVSIGTFVSMMKAFYL 422
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 9-298 2.60e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.68  E-value: 2.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   9 LFLSTLLMgtILSISSNSWLGVWMGLE-INLLSFIPMLTNNMNMMMNESAIKYFIVQAMASTMLLFSILLIQMKF----- 82
Cdd:MTH00020  117 LSLFTFLM--VVLVTSDNYLQLFIGWEgVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFgsldf 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  83 --TISWEKQMISSMMIWSSLLLKIGAAP------FHFWFPEVMSASSWINCLILMTWQKIAPMMVLsycIQMS------- 147
Cdd:MTH00020  195 ssVFNMVVSAPSSDITLICLFLFIGAVGksaqlgLHTWLPDAMEGPTPVSALIHAATMVTAGVFLL---IRSSplfeqap 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 148 ---MFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIVSENVWELYFL-TYSLLSVILILMFKSMNLSML 223
Cdd:MTH00020  272 lalIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLmNHAFFKALLFLSAGSVIHALS 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 224 NQ--IYSAGNMKTEIKF---MMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTT-ITLYYYLRISFSAL 297
Cdd:MTH00020  352 DEqdMRKMGGLISFLPLtyiFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSAlLTAFYSIRLIYLTF 431


                  .
gi 1916859098 298 I 298
Cdd:MTH00020  432 L 432
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 147-336 3.27e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 39.24  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 147 SMFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSL-IVSENVWELYFLTYSLLSVILILMFKSMNLSMLN- 224
Cdd:MTH00209  239 SMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLgLNQPELAFFHLITHALFKALLFICAGNIIHSHGHs 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 225 -QIYSAGNMKTE---IKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTT-ITLYYYLRISFSALIl 299
Cdd:MTH00209  319 qDIRMVGNLWYQmpiTSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSYFSLW- 397

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1916859098 300 sYTENSWSMSIKNEKTMLILPFMVMISTMGLICSSTL 336
Cdd:MTH00209  398 -GPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVM 433
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 148-292 3.62e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.16  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 148 MFIFLVNILSILIGAMGGLNQTSLKQILAYSSISHLGWMISSLIV---SENVWELYFLTY-----SLLSVILILMFKSMN 219
Cdd:PRK07691  276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMmteSGMIGAIYYLIHdmivkAALFLLIGIMIKITG 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1916859098 220 LSMLNQIYSAGNMKTEIKFMMFLTMLSLGGLPPFLGFLPKWIVIQMLIENNMTTIMTIMVVLTTITLYYYLRI 292
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 109-265 7.40e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.02  E-value: 7.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 109 FHFWFPEVMSASSWINCLILMTWQKIAP--MMVLSYCIQMS-----MFIFLVNILSILIGAMGGLNQTSLKQILAYSSIS 181
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGvfLMIRSFPLFEKapltlLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098 182 HLGWMISSLIV--SENVWELYFLTYSLLSVILILMFKSMNLSML---NQIYSAGNMKTEIKF---MMFLTMLSLGGLPPF 253
Cdd:MTH00032  324 QLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvdeQDMRKMGGLIHSIPFtytMMLIGSFSIMGLPYL 403

                         170
                  ....*....|..
gi 1916859098 254 LGFLPKWIVIQM 265
Cdd:MTH00032  404 TGFYSKDLILEL 415
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 9-184 9.04e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 37.79  E-value: 9.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098   9 LFLSTLLMgTILSISSNSWLGVWmglEI-NLLSFIPMLTNNMNMMMNESAIKYFIVQAMaSTMLLFSILLIQMKFTISWE 87
Cdd:PRK08667  119 LFILSMLG-VVASANTFSFLFFW---EImALSSFFLVMNDYQEEETQRAGIFYFVMTQL-STVFLMLGIIVLFIQTGSFE 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859098  88 ---------KQMISSMMIWSSLLLKIGAAPFHFWFPEVMSAS-SWINCLILMTWQKIAP-------MMVLSYCIQMSMFI 150
Cdd:PRK08667  194 lsplgasagILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSALMSGVMLKVAVyglvrflMDVLSPELWWGVLI 273

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1916859098 151 FLVNILSILIGAMGGLNQTSLKQILAYSSISHLG 184
Cdd:PRK08667  274 LLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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