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Conserved domains on  [gi|1912435355|gb|QOE76365|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Stenocephalemys albocaudata]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 3.18e-144

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 411.16  E-value: 3.18e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTIPLLTITSTMTLPISPQLIT 345
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSI 345
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 3.18e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 411.16  E-value: 3.18e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTIPLLTITSTMTLPISPQLIT 345
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSI 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-298 1.55e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 115.21  E-value: 1.55e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  22 SSSNLLLMWVGLEL---SLLAMVPLliNKKNPRSTEAATKYFITQATASMIILLAI--------ILNYKQLGTWMFQQQT 90
Cdd:COG1007   120 SANDLLTLFLGLELlslSLYVLVAF--RRDDRRSSEAALKYFLLGALSSGFLLYGIsllygatgSLNLAGIAAALAAGGA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  91 NNLILT----MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTIT-------MILAI 159
Cdd:COG1007   198 NSPLLLlglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAadwqlllAVLAV 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 160 LSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML-AIITFNP---SLTLLNLMIYIILTIPMFMML-----KLNSSTTMNSI 230
Cdd:COG1007   278 LSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPlgvSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIEDL 357

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1912435355 231 SLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIY 298
Cdd:COG1007   358 AGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-278 7.79e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 7.79e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLL-INKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGT-----------WMFQQQT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTlsfdelskaltGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  91 NNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILL-TWQKIAPLsILFQMHNLINPT------ITMILAILSIF 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGY-GLIRRSLLYLPSspfiqqILLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 164 MGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKL---------NSSTTMNSISLLW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsviyrrVHTRNIRDYGGLA 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1912435355 235 NKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIIL 278
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-331 2.49e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.10  E-value: 2.49e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  13 IFMGPIITMSSSNLLLMWVGLELSLLAMVPLL-INKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQQ--- 88
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDlll 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  89 ------QTNNLILT---MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLI-------NPT 152
Cdd:TIGR01770 191 flsngmLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 153 ITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSL----TLLNLMIYIILTIPMFMML------KLN 222
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 223 SSTTMNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSisl 302
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV--- 427

                         330       340
                  ....*....|....*....|....*....
gi 1912435355 303 tMFPTNNNSKMLSHLLNPKHNLTIPLLTI 331
Cdd:TIGR01770 428 -MYFDKPERRIPSNPQSKAQSLLLSISAL 455
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 3.18e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 411.16  E-value: 3.18e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTIPLLTITSTMTLPISPQLIT 345
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-345 1.66e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 325.61  E-value: 1.66e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLiNPTITMILAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTIPLLTITSTMTLPISPQLIT 345
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILA 344
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 1.93e-104

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 310.22  E-value: 1.93e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTiPLLTITSTMTLPISPQLIT 345
Cdd:MTH00112  321 KNTLT-ATLTTLSTLLLPLSPMILT 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 1.04e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 305.69  E-value: 1.04e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTiPLLTITSTMTLPISPQLIT 345
Cdd:MTH00070  321 TNNLL-SLTIILSLMLLPITPTILN 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 4.41e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 245.26  E-value: 4.41e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSkMLSHLLNP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINM-MSSWRTKS 319

                         330       340
                  ....*....|....*....|....*
gi 1912435355 321 KHNLTIPLLTITSTMTLPISPQLIT 345
Cdd:MTH00200  320 NSNLLVGLLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-308 2.52e-71

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 225.58  E-value: 2.52e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQ 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTN 308
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQH 308
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-344 1.43e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 179.25  E-value: 1.43e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   1 MNPITMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYkq 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 lgtwMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSIlfqMHNLINPTITMILAIL 160
Cdd:MTH00160   80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTT 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 241 LMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLShllNP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK---KN 309

                         330       340
                  ....*....|....*....|....
gi 1912435355 321 KHNLTIPLLTITSTMTLPISPQLI 344
Cdd:MTH00160  310 KFSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-315 2.36e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 170.45  E-value: 2.36e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   6 MMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWm 85
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  86 fqqqtnnLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINP-TITMILAILSIFM 164
Cdd:MTH00144   85 -------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 165 GAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTTLMMM 244
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1912435355 245 SIIlLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLS 315
Cdd:MTH00144  238 SLL-LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-299 2.67e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 157.63  E-value: 2.67e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   5 TMMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILnykqlgTW 84
Cdd:MTH00011    7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  85 MFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITMILAILSIFM 164
Cdd:MTH00011   81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 165 GAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTTLMMM 244
Cdd:MTH00011  161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1912435355 245 SIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYS 299
Cdd:MTH00011  241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-331 5.43e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.58  E-value: 5.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   7 MMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYkqlgtwmF 86
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------S 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  87 QQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILfqMHNLINPTITMILAILSIFMGA 166
Cdd:MTH00197   74 NLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 167 WGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISLLWNKTPTTLMMMSI 246
Cdd:MTH00197  152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 247 ILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNPKHNLTI 326
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLM 311


                  ....*
gi 1912435355 327 PLLTI 331
Cdd:MTH00197  312 MMLPL 316
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-298 1.55e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 115.21  E-value: 1.55e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  22 SSSNLLLMWVGLEL---SLLAMVPLliNKKNPRSTEAATKYFITQATASMIILLAI--------ILNYKQLGTWMFQQQT 90
Cdd:COG1007   120 SANDLLTLFLGLELlslSLYVLVAF--RRDDRRSSEAALKYFLLGALSSGFLLYGIsllygatgSLNLAGIAAALAAGGA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  91 NNLILT----MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTIT-------MILAI 159
Cdd:COG1007   198 NSPLLLlglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAadwqlllAVLAV 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 160 LSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML-AIITFNP---SLTLLNLMIYIILTIPMFMML-----KLNSSTTMNSI 230
Cdd:COG1007   278 LSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPlgvSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIEDL 357

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1912435355 231 SLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIY 298
Cdd:COG1007   358 AGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 15-300 1.51e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 109.34  E-value: 1.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  15 MGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNP-RSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQQqtNNL 93
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSaYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQG--INS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  94 ILT------MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINptITMILAILSIFMGAW 167
Cdd:MTH00199  186 ILTgdvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 168 GGLNQTQMRKIMAYSSIAHMGWML---AIITFNP-SLTLLNLMIYIILTIPMF-MMLKLN-SSTTMNSISLLWNKTPTTL 241
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILfgvAIGSFESiQASLIYMIIYVIMSICSFsIILSLKlTKGLIVEVSGLSRKNPVIA 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1912435355 242 MMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSI 300
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQII 402
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-278 7.79e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 7.79e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLL-INKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGT-----------WMFQQQT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTlsfdelskaltGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  91 NNLILTMTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILL-TWQKIAPLsILFQMHNLINPT------ITMILAILSIF 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGY-GLIRRSLLYLPSspfiqqILLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 164 MGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKL---------NSSTTMNSISLLW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsviyrrVHTRNIRDYGGLA 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1912435355 235 NKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIIL 278
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-297 9.01e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 103.19  E-value: 9.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  13 IFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNP-RSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQ---- 87
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  88 --QQTNNLILTMTLI-------SLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINptITMILA 158
Cdd:MTH00196   82 vlNSGQSFSSVSVPIgylliivALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 159 ILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNP----SLTLLNLMIYIILTIPMFMMLkLNSSTTMNSI---S 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSII-LALNVYKNLIiefS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1912435355 232 LLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLI 297
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
16-300 1.53e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 103.75  E-value: 1.53e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  16 GPIITMSSSNLLLMWVGLE---LSLLAMVPLliNKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMF------ 86
Cdd:PRK05777  115 GMMVMVSANDLLTLFLGLEllsLPLYALAAL--RRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFagiaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  87 ---QQQTNNLILT---MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTITM----- 155
Cdd:PRK05777  193 ladGSGNSLLLLFglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGLSEdwqqv 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 156 --ILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML-AIITFNP---SLTLLNLMIYIILTIPMFMMLKLNSSTTMNS 229
Cdd:PRK05777  273 laIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvGLAAGTAegySAVLFYLLAYLFMTLGAFGVISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1912435355 230 ISL-----LWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSI 300
Cdd:PRK05777  353 ESIsdfagLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-331 2.49e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.10  E-value: 2.49e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  13 IFMGPIITMSSSNLLLMWVGLELSLLAMVPLL-INKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQQ--- 88
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDlll 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  89 ------QTNNLILT---MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLI-------NPT 152
Cdd:TIGR01770 191 flsngmLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 153 ITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSL----TLLNLMIYIILTIPMFMML------KLN 222
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 223 SSTTMNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSisl 302
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV--- 427

                         330       340
                  ....*....|....*....|....*....
gi 1912435355 303 tMFPTNNNSKMLSHLLNPKHNLTIPLLTI 331
Cdd:TIGR01770 428 -MYFDKPERRIPSNPQSKAQSLLLSISAL 455
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 23-301 5.04e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 93.29  E-value: 5.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMF----------QQQTNN 92
Cdd:COG0651   126 TGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMadlaarlaelDPGLLL 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  93 LILTMTLISLSMKLGLAPFHYWLPE-----------VTQGIELHTGL--ILLTWQKIAPLSILFQMHNLInptitMILAI 159
Cdd:COG0651   206 AAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGTLL-----LVLGL 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 160 LSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII----LTIPMFM----MLKLNSSTTMNSIS 231
Cdd:COG0651   281 LTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLaagaIERATGTRDLDKLG 360

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 232 LLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSIS 301
Cdd:COG0651   361 GLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 6-198 3.25e-13

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 70.35  E-value: 3.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   6 MMMIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILnYKQLGTWM 85
Cdd:TIGR01972 108 FYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILG-LYFLGGGT 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  86 FQQQT-NNLILTMT---------LISLSMKLGLAPFHYWLPEV-----TQGIELHTGLILltwqKIAPLSI------LFQ 144
Cdd:TIGR01972 187 FDLLElLNLPLPFGvqtwlflafFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFlrfnlpLFP 262

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1912435355 145 MHNLINPTITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGW-MLAIITFNP 198
Cdd:TIGR01972 263 DASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFvLLGIFSFNE 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 23-198 4.89e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 69.72  E-value: 4.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQ----------QQTNN 92
Cdd:COG1008   130 ALDLFLFYVFWELMLIPMYFLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDiaelaaaplpLTAQL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  93 LILTMTLISLSMKLGLAPFHYWLPEV-----TQGIELHTGLILltwqKIA-------PLSILFQMHNLINPTItMILAIL 160
Cdd:COG1008   210 LLFLAFFIAFAVKVPMFPFHTWLPDAhveapTAGSVLLAGVLL----KMGgygllrfALPLFPEASAYFAPLL-AALGVI 284

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWM-LAIITFNP 198
Cdd:COG1008   285 GIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNP 323
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 23-210 2.18e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.60  E-value: 2.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMF--------QQQTNNLI 94
Cdd:PRK08375  125 TADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMadlagalaENPTVVTA 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  95 LTMTLISLSMKLGLAPFHYWLPE--------VTQGIE-LHT-----GLILLtwqkIAPLSILFQMHNLINPTITMILAIL 160
Cdd:PRK08375  205 FGFVLLALALKAAVFPLHTWLPRaypaappvVTALLSgLVTkvavyALIRI----YFTVFGGDFRFALGLGWLLAVLALL 280

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII 210
Cdd:PRK08375  281 SMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330
ndhB CHL00049
NADH dehydrogenase subunit 2
 22-215 8.10e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.80  E-value: 8.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  22 SSSNLLLMWVGLELSLLAMVPLL-INKKNPRSTEAATKYFITQATASMIILLAIILNY----------KQLGTWMFQQQT 90
Cdd:CHL00049  129 GANDLITIFVALECLSLCSYLLSgYTKKDVRSNEATMKYLLMGGASSSILVYGFSWLYglsggeielqEIVNGLINTQMY 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  91 NNLILTMTLIS----LSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTIT-------MILAI 159
Cdd:CHL00049  209 NSPGISIALIFitvgIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSSnewhlllEILAI 288

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1912435355 160 LSIFMGAWGGLNQTQMRKIMAYSSIAHMGW-MLAIITFNPSLTLLNLMIYIILTIPM 215
Cdd:CHL00049  289 LSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITYMLFYIFM 345
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-191 7.85e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 62.95  E-value: 7.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  15 MGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRST---------EAATKYFITQATASMIILLAIIL------NYK 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgNEG 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  80 QLGTWMFQQ-QTNNLILT-------MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMhnLINP 151
Cdd:MTH00198  279 MLGTILSATlETTNIELRqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL--VITS 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1912435355 152 TITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 11-332 2.35e-10

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 61.63  E-value: 2.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  11 FTIFMgpIITMSSSNLLLMWVGLELSLLAMVpLLINKKNPR--STEAATKYFITQATASMIILLAIILNYKQLGTWMFQQ 88
Cdd:MTH00020  120 FTFLM--VVLVTSDNYLQLFIGWEGVGLCSY-LLINFWLTRieANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSS 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  89 QTNNLILT----MTLISL---------SMKLGLapfHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLIN--PTI 153
Cdd:MTH00020  197 VFNMVVSApssdITLICLflfigavgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEqaPLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 154 TMILAI---LSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNP-SLTLLNLMIYIILTIPMFM-----MLKLNSS 224
Cdd:MTH00020  274 LIIVTIvgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHySISLFHLMNHAFFKALLFLsagsvIHALSDE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 225 TTMNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMM-ALLNLFFYTRLIYsisLT 303
Cdd:MTH00020  354 QDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFsALLTAFYSIRLIY---LT 430

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1912435355 304 mFPTNNNSK--MLSHLLNPKHNLTIPLLTIT 332
Cdd:MTH00020  431 -FLSNTNLKkaVFFHLHEGDWNLLLPLGILA 460
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-191 8.98e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.73  E-value: 8.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   9 IYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLL-INKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQ 87
Cdd:PRK08376  126 LILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMA 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  88 QQTNNLILTMTLI----------SLSMKLGLAPFHYWLPEVTQGIELHTGLILLTwQKIAPLSILFQM-HNLINPTITM- 155
Cdd:PRK08376  206 YLAVKMSENPTVVakialalfiaGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLV-IKQAGLYALARVlFSIYGPAINLa 284

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1912435355 156 -------ILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:PRK08376  285 tvgwviiILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 15-197 1.17e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 59.45  E-value: 1.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  15 MGPIITMSSSNLLLMWVGLELSLLAMVpLLINK-KNPRSTEAATKYFITQATASMIILLAII----LNYKQLGTWMFQQQ 89
Cdd:PRK05846  122 GGVIGVFAALDLLLFYVFFEAMLIPMY-FLIGVwGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADL 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  90 TNnLILTMT---------LISLSMKLGLAPFHYWLPEV-----TQGIELHTGLILltwqKIAP---LSILFQM-----HN 147
Cdd:PRK05846  201 LN-LPLPPGvqywlflafFIAFAVKMPMFPLHTWLPDAhvqapTAGSVLLAGILL----KMGAyglLRFSLPLfpdasHE 275

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1912435355 148 LInpTITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGW-MLAIITFN 197
Cdd:PRK05846  276 FA--PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFvTLGIFAGN 324
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 10-190 9.00e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 56.70  E-value: 9.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  10 YFTIFMGPIITM-SSSNLLLMWVGLEL-SLLAMvpLLI--NKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWM 85
Cdd:COG1009   116 YLLLFMAAMLGLvLSDNLLLLFVFWELvGLCSY--LLIgfWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  86 F-------QQQTNNLILTMTLISLSM----KLGLAPFHYWLPE-----------------VTQGIELhtglilltwqkIA 137
Cdd:COG1009   194 FsellaaaPTILSSPLLTLILLLLLLgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYL-----------LA 262

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1912435355 138 PLSILFQMHNLINPTITmILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWM 190
Cdd:COG1009   263 RLSPLFALSPVWLTVVA-IIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-196 9.85e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.48  E-value: 9.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  20 TMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWM-------------- 85
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILVYANAATVMgdgemailwtellk 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  86 ----FQQQTNNLILTMTLISLSMKLGLAPFHYWLPE-----------VTQGIELHTGL-ILLTWQKIAPLSIlfqmHNLI 149
Cdd:PRK06458  204 haslLDPTLMKLAFVFLLIGFGTKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAI----GSDF 279

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1912435355 150 NPTITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGwmlaIITF 196
Cdd:PRK06458  280 PGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMG----LIAF 322
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-191 2.16e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.44  E-value: 2.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   7 MMIYFTIFMGPIITMSSSNLLLMWVGLE-LSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNY------- 78
Cdd:PRK02504  113 AAILLTATLGGMFLSGATELVMIFISLEtLSIASYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYglsggst 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  79 --KQLGTWMFQQQTNNLILTMTLI--SLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPTIT 154
Cdd:PRK02504  193 qlSAIALALITSPSLGLALALVFViaGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSFD 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1912435355 155 -------MILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:PRK02504  273 eqwkllfTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
25-210 7.05e-08

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 53.95  E-value: 7.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  25 NLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAII----------LNYKQLGTWMFQQQTNNLI 94
Cdd:PRK07363  128 NLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLgivwlsgstsFDYDAISTQNLSLNTQLIL 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  95 LTMTLISLSMKLGLAPFHYWLP----EVTQGIELHTGLILLTWQKIAPLSILFQMH----NLINPTITMILAILSIFmGA 166
Cdd:PRK07363  208 LTGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFpqtwSLVAPGLAIIGTISVIY-GA 286

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1912435355 167 WGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII 210
Cdd:PRK07363  287 LSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMI 330
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 1.00e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.02  E-value: 1.00e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1912435355 291 FFYTRLIYSISLTMFPTNNNSKMLSHLLNPKHNLTIPLLTITSTMTLPISP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 23-191 1.75e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 52.73  E-value: 1.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAmVPLLINK-KNPRSTEAATKYFITQATASMIILLA----------IILNYKQLGTWMFQQQTN 91
Cdd:PRK12561  106 AQDLLLFFLMWELELVP-VYLLISIwGGQKRLYAATKFILYTALASIFILVAglalalsgdtFTFDLAELGAKSYPLALE 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  92 NLILTMTLISLSMKLGLAPFHYWLPE-----------VTQGIELHTG---LILLTWQkiaplsILFQMHNLINPtITMIL 157
Cdd:PRK12561  185 LLLYAGFLIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyaLIRFNVQ------MLPDAHVYFAP-ALAIL 257

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1912435355 158 AILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:PRK12561  258 GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 8-191 6.52e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 50.86  E-value: 6.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   8 MIYFTIFM---GPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLA----------I 74
Cdd:PRK02546  116 LFYFLMLAmygGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAalamafygdtP 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  75 ILNYKQLGTWMFQQQTNNLILTMTLISLSMKLGLAPFHYWLP----EVTQGIELHTGLILLTWQKIAPLSILFQM----H 146
Cdd:PRK02546  196 TFDMTALAAKDFGLGFQLLCYAGLLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLRMNAGMlpdaH 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1912435355 147 NLINPtITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:PRK02546  276 AQFAP-LLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-332 2.76e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 2.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  29 MWVGLELSLLAMVPLLI-NKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGT-----------WMFQQQTNN---- 92
Cdd:PRK12667  138 LFVMLEVLSISAYGLVAyYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTlnmadlsakirGLSFPLTGGlagn 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  93 ------LILTMTLISLSMKLGLAPFHYWLPEV-----------TQGIELHTGLILLtwqkIAPLSILFQMHNLINPT--- 152
Cdd:PRK12667  218 pplalgVALALALWAFTIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGAYAI----IRFLYTIFGISPSLIDFraa 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 153 ---ITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNS------ 223
Cdd:PRK12667  294 lspILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASgvfiha 373

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 224 --STTMNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSIs 301
Cdd:PRK12667  374 agTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL- 452

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1912435355 302 ltMFPTNNNSKMLSHLLNPKHNLTIPLLTIT 332
Cdd:PRK12667  453 --FFGKPKSGEEVEHKESPSMSVVILVLALA 481
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 26-282 3.65e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.45  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  26 LLLMWVGLELSLLAMVPLlinkKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQQQTNNLI--------LTM 97
Cdd:PRK08668  123 LYIFWEIMTFSSFMMVPM----GKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfaLIV 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  98 TLISLSM---KLGLAPFHYWLPEV-------------TQGIELHTGLILLTWQKIAPLSILFQMHNLIN-PTITMILAIL 160
Cdd:PRK08668  199 FLFLLAFgvaKAGIFPLHVWAPDAyseapqsfsavlsGQLSKLGAYGFLLVLYVLPGTKLFSEFGTYRGvPLFNYILAWL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 ---SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII----LTIPMFMMLKL----NSSTTMNS 229
Cdd:PRK08668  279 gniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnhalFKGLFFLIFAAviyrTGTTKISE 358

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1912435355 230 ISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMM 282
Cdd:PRK08668  359 MGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
24-192 8.89e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 47.25  E-value: 8.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  24 SNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMF-------QQQTNNLILT 96
Cdd:PRK12663  128 GDLFNLYVWFEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMahiamrlNDMGDTATLT 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  97 MT----LISLSMKLGLAPFHyWLPEV--TQGIELHTGLI-LLTWQKIAPL----SILFQMHNLINPTITMILAILSIFMG 165
Cdd:PRK12663  208 TIallfLLAFGMKAALFPFM-WLPAAyhTPNTEVAALFAaLLTKVGIYALirvfTLLFPQERELLHPLLATMAAITMVIG 286

                         170       180
                  ....*....|....*....|....*..
gi 1912435355 166 AWGGLNQTQMRKIMAYSSIAHMGWMLA 192
Cdd:PRK12663  287 ALGALAYKDIRRIAGYQVISSIGFILL 313
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
23-266 2.20e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.85  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAII----------LNYKQLGTWMFQQQTNN 92
Cdd:PRK06473  126 AQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLglvwlsgassFDYEPLRSHTLPLSTQL 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  93 LILTMTLISLSMKLGLAPFHYWLP----EVTQGIELHTGLILLTWQKIAPL----SILFQMHNLINPTITmILAILSIFM 164
Cdd:PRK06473  206 LLLAPILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLrfgvGLFPEAWVYLAPWLA-TWAVVSVLY 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 165 GAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII---LTIPMFMML-----KLNSSTTMNSISLLWNK 236
Cdd:PRK06473  285 GASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMIshgLISALLFLLvgvvyKKTGSRDVDVLRGLLNP 364

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1912435355 237 T---PTTLMMMSIILLSLGGLPPLTGFLPKWII 266
Cdd:PRK06473  365 ErglPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-191 6.62e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.42  E-value: 6.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   2 NPITMMMIYFTIFMGPIITMSSsNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYF-ITQATASMIILLAIILNYKQ 80
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLkILMISALLLFLPAVILIYTK 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  81 LGTWMFQQQT-----NNLILTMTLISLSMKLGLAPFHYWLPE-----------------VTQGIELHTGLILLTWqKIAP 138
Cdd:PRK06589  194 TGNLDFVSGGlfsknQSIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSY 272

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1912435355 139 LSILFQMHNLInptitMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:PRK06589  273 LQRIFAEFNWL-----IFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAL 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 23-210 6.76e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.36  E-value: 6.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLaMVPLLINKKNPRST-EAATKYFITQATASMIILLAII--------------LNYKQLGTW--M 85
Cdd:PRK08676  121 SDNLALFWIFAELTTV-FSAMLIAILSARENiDAALKYIFIASTAMIFAFIGLIflfsltrqalgtgtLNWTELAAHasL 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  86 FQQQTNNLILTMTLISLSMKLGLAPFHYWLPEV-TQGIELHTGLILLTWQKIAPLSILfQMHNLINPT--------ITMI 156
Cdd:PRK08676  200 LSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGIL-RLSALLRQSgaaeqfsnVLIG 278

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1912435355 157 LAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII 210
Cdd:PRK08676  279 LGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 54-188 1.43e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 43.50  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  54 EAATKYFITQATASMIILLAIILNYKQLGTWMFQ--------QQTNNLILTMTLISLSMKLGLAPFHYWLPE-------- 117
Cdd:MTH00217  160 QASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQalcclkieKELQYFIFLGFFLSLAIKIPKIPFHIWLPQahveapva 239

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1912435355 118 ---VTQGIELHTG---LILLTWQKIAPLSILFqmhnliNPTItMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMG 188
Cdd:MTH00217  240 gsvILAGVLLKLGgygFIRFSWPLLPEASEYF------SPLI-QTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMG 309
PRK12650 PRK12650
DUF4040 family protein;
12-297 2.13e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 2.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  12 TIFMGPIITMS-SSNLLLMWVGLELSLLAMVpLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGT------- 83
Cdd:PRK12650  117 TAFMAAMLLLVlADDVVVLFVAWELVSLASF-FLIARSGSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTtslsgil 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  84 ----WmfQQQTNNLILTMTLISLS--MKLGLAPFHYWLPEVTQGIE-----LHT------GLILLTwqkiaPLSILF--- 143
Cdd:PRK12650  196 hsdvW--AEKPGLTTVVAVLIAVAafTKSAQFPFHFWLPEAMAAITpvsafLHAaavvkaGIYLLL-----RFSPVFhdv 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 144 QMHNLINPTITMILAIlsifMGAWGGLNQTQMRKIMAYSSIAHMGWMLAII----TFNPSLTLLNLMIYIILTIPMFMML 219
Cdd:PRK12650  269 AVWNWLLIIVGMITAL----MGAVFAVQKTDLKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHALFKSSLFMLI 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 220 KL----NSSTTMNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELL-----KNNCIILTTMMAMMALLNL 290
Cdd:PRK12650  345 GVvdhqAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVVLLLVGAALGAVFTF 424


                  ....*..
gi 1912435355 291 FFYTRLI 297
Cdd:PRK12650  425 AYSARLV 431
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 54-242 4.07e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.22  E-value: 4.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  54 EAATKYFITQATASMIILLAIILNYKQLGT----------WMFQQQTNNLILTMTLISLSMKLGLAPFHYWLPE------ 117
Cdd:MTH00226  182 QAAYYFFFYTLIGSVLMLLCLFSLYNIHGTtdyltlascsHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKahveap 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 118 -----VTQGIELHTG---LILLTWqKIAPLSilfqMHNLINPTITMilAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGW 189
Cdd:MTH00226  262 vagsvLLAGILLKLGgygLVRLSW-PILPLG----AQNLAPAVIAM--GIVGIVYGSFATCRQIDVKRLVAYSSVAHMGL 334

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1912435355 190 MlaiitfnpSLTLLNLMIyIILTIPMFMMLK--LNSSTTMNSISLLWNKTPTTLM 242
Cdd:MTH00226  335 V--------SITLVTHDI-IGLTGSIFIMLAhgIVSSLLFILVTILYDRHHTRLI 380
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 8-188 5.65e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 41.68  E-value: 5.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   8 MIYFTIFMGPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTW--- 84
Cdd:PRK08377  112 MLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLnma 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  85 -------MFQQQTNNLILTMTLISLSMKLGLAPFHYWLPEVTQG----IELHTGLILLTWQKIAPLSILFQMHNLINPT- 152
Cdd:PRK08377  192 hiaqlagTIDPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAaphpITVMFSAFVVKAGLYAMARILYLMQNANGWSs 271

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1912435355 153 ---ITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMG 188
Cdd:PRK08377  272 vlkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVG 310
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 11-267 9.73e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 9.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  11 FTIFMgpIITMSSSNLLLMWVGLE-LSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTWMFQQ- 88
Cdd:MTH00032  120 FTFLM--MVLVTSDNYLQLFIGWEgVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTf 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  89 ---------------------------QTNNLILTMTLISLSMKLGLapfHYWLPEVTQGIELHTGLILLTWQKIAPLSI 141
Cdd:MTH00032  198 nggsvgsgimdrgyygggayesplapfAIIGILLLIGCIGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFL 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 142 LFQMHNLINPT-----ITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPS--LTLLNLMIYIILTIP 214
Cdd:MTH00032  275 MIRSFPLFEKApltllIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGShnVGLFHLVNHAFFKAL 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1912435355 215 MFMMLK--LNSSTT----MNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIII 267
Cdd:MTH00032  355 LFLSAGsvIHSTTVdeqdMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL 413
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 3-194 1.17e-03

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 40.60  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355   3 PITMMMIYFTIFMGPII-TMSSSNLLLMWVGLELSLLAMVpLLIN--KKNPRSTEAATKYFITQATASMIILLAIILNYK 79
Cdd:TIGR00940 104 PLPNFYAYLLAFMGAMLgVVLSDNLILLYVFWELTSIVSF-LLISywHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGK 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  80 QLGTWMFQQ--QTNNLILTMTLISLSMKLGLA---------PFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNL 148
Cdd:TIGR00940 183 ITGSFSIDAviASADAIRNSPLFGTAMVLVLLgaftksaqfPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPV 262

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1912435355 149 INPT-----ITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAII 194
Cdd:TIGR00940 263 FAGTeawfwIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLL 313
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 11-329 1.30e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 40.38  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  11 FTIFMgpIITMSSSNLLLMWVGLELSLLAMVpLLINKKNPR--STEAATKYFITQATASMIILLAIILNYKQLGTWMFQQ 88
Cdd:MTH00210  120 FTFLM--IVLVTSDNYVQLFIGWEGVGLCSY-LLINFWLTRikANKAAIKAMLINRVGDIGLVLAMIMILKEFGTLEFST 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  89 QTNNLILT-----MTLISL---------SMKLGLapfHYWLPEVTQGIELHTGLILLTWQKIAPL------SILFQMHNL 148
Cdd:MTH00210  197 ISSLLVTNinkesLTIICLllfigavgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVfliirsGPLFEGSPL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 149 InPTITMILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITF-NPSLTLLNLMIYIILTIPMFM-----MLKLN 222
Cdd:MTH00210  274 A-LTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGIsNYSTSLFHLMNHAFFKALLFLsagsvIHAVS 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 223 SSTTMNSISLLWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMM-ALLNLFFYTRLIYsis 301
Cdd:MTH00210  353 DEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFsALLTAFYSIRLIY--- 429

                         330       340       350
                  ....*....|....*....|....*....|
gi 1912435355 302 LTmFPTNNNSKMLSHL--LNPKHNLTIPLL 329
Cdd:MTH00210  430 LT-FITNTNSKKEVFIgvHESSWNITFPLL 458
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 26-333 1.54e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 40.13  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  26 LLLMWVGLELSLLAMVpllINKKNPRSTEAATKYFITQATASMIILLAIILNYKQlGTW----MFQQQTNNLILTMTLIS 101
Cdd:MTH00207  113 LLLGWDGLGLVSFILV---IYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTLNQ-GHWsitnMWQTDMNNYIALSIMIA 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 102 LSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINPT-----ITMILAILSIFMGAWGGLNQTQMR 176
Cdd:MTH00207  189 AMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSSTywfnpALLLTASLTMLMAGLSAMTECDMK 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 177 KIMAYSSIAHMGWMLAIITFN-PSLTLLNLMIYIILTIPMF-----MMLKLNSSTTMNSISLLWNKTPTTLMMMSIILLS 250
Cdd:MTH00207  269 KIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFvcagsLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLA 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 251 LGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTrliYSISLTMFPTNNNSKMLSHLLNPKHNLTIPLLT 330
Cdd:MTH00207  349 LCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYS---TRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLL 425


                  ...
gi 1912435355 331 ITS 333
Cdd:MTH00207  426 LTL 428
ndhD CHL00011
NADH dehydrogenase subunit 4
 16-191 3.56e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 39.16  E-value: 3.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  16 GPIITMSSSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAII---LNYKQLGTWMFQQQTNN 92
Cdd:CHL00011  124 GQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIGVLgmgLYGSNEPTLNFETLANQ 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  93 --------LILTMTLISLSMKLGLAPFHYWLPEvTQGiELHTGL------ILLTWQKIAPLSILFQM----HNLINPTIt 154
Cdd:CHL00011  204 sypvaleiLFYIGFLIAYAVKLPIIPLHTWLPD-THG-EAHYSTcmllagILLKMGAYGLIRINMELlphaHSIFSPWL- 280

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1912435355 155 MILAILSIFMGAWGGLNQTQMRKIMAYSSIAHMGWML 191
Cdd:CHL00011  281 VIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFII 317
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 97-320 3.98e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 38.31  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  97 MTLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILFQMHNLINptitMILAILSIFMGAWGGLNQTQMR 176
Cdd:MTH00091   62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNF----FFLLLFGLLICFFQMFLLKSYK 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 177 KIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYIILTIPMFMMLKLNSSTTMNSISllwnktpTTLMMMSIILLSlgglpp 256
Cdd:MTH00091  138 NLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWE-------TLLVFMNLPFSV------ 204

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1912435355 257 ltGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLIYSISLTMFPTNNNSKMLSHLLNP 320
Cdd:MTH00091  205 --TFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLP 266
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 23-297 4.24e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 4.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  23 SSNLLLMWVGLELSLLAMVPLLINKKNPRSTEAATKYFITQATASMIILLAIILNYKQLGTW----MFQQ----QTNNLI 94
Cdd:PRK12662  129 SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLnmgdMFLIiqdlPTNRAI 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355  95 LTMTL---ISLSMKLGLAPFHYWL-------PEVTQGIELHTGLILLTWQKIAPLSILFQMH----NLINPTITMILAIL 160
Cdd:PRK12662  209 QIGVLfimVGLFIKAALFPFHKWLiqayseaPSFISVFFSGTSTKVMIYLIIRIVYDVFKANfvftTLPFNNVFMILAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1912435355 161 SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAIITFNPSLTLLNLMIYII----LTIPMFMMLKLNS----STTMNSISL 232
Cdd:PRK12662  289 AIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTTKLEDCLN 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1912435355 233 LWNKTPTTLMMMSIILLSLGGLPPLTGFLPKWIIITELLKNNCIILTTMMAMMALLNLFFYTRLI 297
Cdd:PRK12662  369 LWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIV 433
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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