CENP-B protein 1 [Schizosaccharomyces pombe]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
DDE_1 | pfam03184 | DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
207-384 | 1.44e-69 | ||||
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. : Pssm-ID: 367380 Cd Length: 177 Bit Score: 220.34 E-value: 1.44e-69
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HTH_ABP1_N super family | cl39496 | Fission yeast centromere protein N-terminal domain; This domain is found in the fission yeast ... |
5-64 | 1.19e-19 | ||||
Fission yeast centromere protein N-terminal domain; This domain is found in the fission yeast centromere protein (Abp1) in species such as Shizosaccharomyces pombe. The domain, referred to as Domain 1, is DNA-binding and makes up half of the N-terminal region. The actual alignment was detected with superfamily member pfam18107: Pssm-ID: 407941 Cd Length: 61 Bit Score: 82.72 E-value: 1.19e-19
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CENPB | smart00674 | Putative DNA-binding domain in centromere protein B, mouse jerky and transposases; |
76-143 | 6.43e-17 | ||||
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases; : Pssm-ID: 197828 Cd Length: 66 Bit Score: 75.02 E-value: 6.43e-17
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Name | Accession | Description | Interval | E-value | ||||
DDE_1 | pfam03184 | DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
207-384 | 1.44e-69 | ||||
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Pssm-ID: 367380 Cd Length: 177 Bit Score: 220.34 E-value: 1.44e-69
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HTH_ABP1_N | pfam18107 | Fission yeast centromere protein N-terminal domain; This domain is found in the fission yeast ... |
5-64 | 1.19e-19 | ||||
Fission yeast centromere protein N-terminal domain; This domain is found in the fission yeast centromere protein (Abp1) in species such as Shizosaccharomyces pombe. The domain, referred to as Domain 1, is DNA-binding and makes up half of the N-terminal region. Pssm-ID: 407941 Cd Length: 61 Bit Score: 82.72 E-value: 1.19e-19
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CENPB | smart00674 | Putative DNA-binding domain in centromere protein B, mouse jerky and transposases; |
76-143 | 6.43e-17 | ||||
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases; Pssm-ID: 197828 Cd Length: 66 Bit Score: 75.02 E-value: 6.43e-17
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HTH_Tnp_Tc5 | pfam03221 | Tc5 transposase DNA-binding domain; |
78-140 | 3.04e-16 | ||||
Tc5 transposase DNA-binding domain; Pssm-ID: 460850 Cd Length: 63 Bit Score: 73.05 E-value: 3.04e-16
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Name | Accession | Description | Interval | E-value | ||||
DDE_1 | pfam03184 | DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
207-384 | 1.44e-69 | ||||
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Pssm-ID: 367380 Cd Length: 177 Bit Score: 220.34 E-value: 1.44e-69
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HTH_ABP1_N | pfam18107 | Fission yeast centromere protein N-terminal domain; This domain is found in the fission yeast ... |
5-64 | 1.19e-19 | ||||
Fission yeast centromere protein N-terminal domain; This domain is found in the fission yeast centromere protein (Abp1) in species such as Shizosaccharomyces pombe. The domain, referred to as Domain 1, is DNA-binding and makes up half of the N-terminal region. Pssm-ID: 407941 Cd Length: 61 Bit Score: 82.72 E-value: 1.19e-19
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CENPB | smart00674 | Putative DNA-binding domain in centromere protein B, mouse jerky and transposases; |
76-143 | 6.43e-17 | ||||
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases; Pssm-ID: 197828 Cd Length: 66 Bit Score: 75.02 E-value: 6.43e-17
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HTH_Tnp_Tc5 | pfam03221 | Tc5 transposase DNA-binding domain; |
78-140 | 3.04e-16 | ||||
Tc5 transposase DNA-binding domain; Pssm-ID: 460850 Cd Length: 63 Bit Score: 73.05 E-value: 3.04e-16
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Blast search parameters | ||||
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