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Conserved domains on  [gi|1909715802|ref|WP_190597688|]
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MULTISPECIES: photosystem I assembly protein Ycf3 [Synechocystis]

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11479823)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-172 5.08e-127

photosystem I assembly protein Ycf3; Provisional


:

Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 353.59  E-value: 5.08e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   1 MPRTQRNDNFIDKSFTVMADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMAL 80
Cdd:PRK02603    1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNW 160
Cdd:PRK02603   81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160

                         170
                  ....*....|..
gi 1909715802 161 LKITGRSEMDVF 172
Cdd:PRK02603  161 LKTTGRSNIDVY 172
 
Name Accession Description Interval E-value
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-172 5.08e-127

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 353.59  E-value: 5.08e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   1 MPRTQRNDNFIDKSFTVMADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMAL 80
Cdd:PRK02603    1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNW 160
Cdd:PRK02603   81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160

                         170
                  ....*....|..
gi 1909715802 161 LKITGRSEMDVF 172
Cdd:PRK02603  161 LKTTGRSNIDVY 172
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-173 1.05e-126

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 352.87  E-value: 1.05e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   1 MPRTQRNDNFIDKSFTVMADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMAL 80
Cdd:COG5713     1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNW 160
Cdd:COG5713    81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160

                         170
                  ....*....|...
gi 1909715802 161 LKITGRSEMDVFF 173
Cdd:COG5713   161 LKTTGRSKIDVYF 173
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 29-153 7.64e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 7.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  29 NQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLE-------------------------------ENPNDrSYILYN 77
Cdd:TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRApssqnaiklhrallasgntaeavktleawlkTHPND-AVLRTA 775

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1909715802  78 MALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHfqgekakeagQEDDAenlfdKAAEYWKQAIRLAPNN 153
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL----------ELKDP-----RALEYAERALKLAPNI 836
TPR_12 pfam13424
Tetratricopeptide repeat;
35-104 8.62e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 8.62e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1909715802  35 AFVYYRDGMSAQADGEYAEALDNYEEALRLEE---NPNDRSY--ILYNMALIHASNGDHEKALGLYQEAIELNPK 104
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARrllGPDHPLTatTLLNLGRLYLELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 49-103 1.83e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 1.83e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1909715802  49 GEYAEALDNYEEALRLEENpNDRsyILYNMALIHASNGDHEKALGLYQEAIELNP 103
Cdd:cd24142    14 GNFELALKFLQRALELEPN-NVE--ALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-105 1.93e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 1.93e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1909715802   74 ILYNMALIHASNGDHEKALGLYQEAIELNPKM 105
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-172 5.08e-127

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 353.59  E-value: 5.08e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   1 MPRTQRNDNFIDKSFTVMADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMAL 80
Cdd:PRK02603    1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNW 160
Cdd:PRK02603   81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160

                         170
                  ....*....|..
gi 1909715802 161 LKITGRSEMDVF 172
Cdd:PRK02603  161 LKTTGRSNIDVY 172
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-173 1.05e-126

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 352.87  E-value: 1.05e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   1 MPRTQRNDNFIDKSFTVMADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMAL 80
Cdd:COG5713     1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNW 160
Cdd:COG5713    81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160

                         170
                  ....*....|...
gi 1909715802 161 LKITGRSEMDVFF 173
Cdd:COG5713   161 LKTTGRSKIDVYF 173
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 7.23e-109

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 307.70  E-value: 7.23e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   1 MPRTQRNDNFIDKSFTVMADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMAL 80
Cdd:CHL00033    1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNW 160
Cdd:CHL00033   81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                  ....*...
gi 1909715802 161 LKITGRSE 168
Cdd:CHL00033  161 LKITGRFE 168
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 45-161 1.40e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.19  E-value: 1.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  45 AQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEkak 124
Cdd:COG3914    88 LQALGRYEEALALYRRALAL--NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR--- 161

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1909715802 125 eagqeddaenlFDKAAEYWKQAIRLAPNNyIEAQNWL 161
Cdd:COG3914   162 -----------LEEAIAALRRALELDPDN-AEALNNL 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 34-161 3.88e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 3.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  34 EAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDRSyILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVA 113
Cdd:COG3914   111 NAEALFNLGNLLLALGRLEEALAALRRALAL--NPDFAE-AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1909715802 114 VIYhfqgekaKEAGQeddaenlFDKAAEYWKQAIRLAPNNYIEAQNWL 161
Cdd:COG3914   188 NAL-------QDLGR-------LEEAIAAYRRALELDPDNADAHSNLL 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-154 1.16e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.57  E-value: 1.16e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  33 KEAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNV 112
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--DPDD-AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1909715802 113 AVIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAPNNY 154
Cdd:COG0457    83 GLALQALGR--------------YEEALEDYDKALELDPDDA 110
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
34-153 4.05e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 4.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  34 EAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVA 113
Cdd:COG0457    41 DAEALYNLGLAYLRLGRYEEALADYEQALEL--DPDD-AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1909715802 114 VIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:COG0457   118 LALLELGR--------------YDEAIEAYERALELDPDD 143
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-153 9.56e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.25  E-value: 9.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  42 GMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGE 121
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRL--DPDN-ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1909715802 122 kakeagqeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:COG4235   101 --------------YAEAIAAWQKLLALLPAD 118
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-153 4.52e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 4.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  20 DIILKILPTNQKAKEAfvYYRDGMSAQADGEYAEALDNYEEALRLEEnpnDRSYILYNMALIHASNGDHEKALGLYQEAI 99
Cdd:COG2956    29 DLLEEALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDP---DRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1909715802 100 ELNPKMPSALNNVAVIYHFQGEKAK--------------------EAGQEDDAENLFDKAAEYWKQAIRLAPNN 153
Cdd:COG2956   104 ELDPDDAEALRLLAEIYEQEGDWEKaievlerllklgpenahaycELAELYLEQGDYDEAIEALEKALKLDPDC 177
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-161 5.12e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 5.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  35 AFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAV 114
Cdd:COG0457    76 AEALNNLGLALQALGRYEEALEDYDKALEL--DPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1909715802 115 IYHFQG--EKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEAQNWL 161
Cdd:COG0457   153 ALEKLGryEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 22-153 6.56e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 6.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  22 ILKILPTNQKAkeafvYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIEL 101
Cdd:COG4783    30 ALELDPDNPEA-----FALLGEILLQLGDLDEAIVLLHEALEL--DPDE-PEARLNLGLALLKAGDYDEALALLEKALKL 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1909715802 102 NPKMPSALNNVAVIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:COG4783   102 DPEHPEAYLRLARAYRALGR--------------PDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
19-142 1.04e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.00  E-value: 1.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  19 ADIILKILPTNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPnDRSYILYNMALIHASNGDHEKALGLYQEA 98
Cdd:COG4785    57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--DP-DLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1909715802  99 IELNPKMPSALNNVAVIYHFqgekakeAGQEDDAENLFDKAAEY 142
Cdd:COG4785   134 LELDPDYAYAYLNRGIALYY-------LGRYELAIADLEKALEL 170
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 32-153 1.45e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 1.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  32 AKEAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNN 111
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALEL--DPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1909715802 112 VAVIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:COG4783    78 LGLALLKAGD--------------YDEALALLEKALKLDPEH 105
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-154 1.59e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 1.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  45 AQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGlYQEAIELNPKMPSALNNVAVIYHFQGEkak 124
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL--DPDN-ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD--- 74

                          90       100       110
                  ....*....|....*....|....*....|
gi 1909715802 125 eagqeddaenlFDKAAEYWKQAIRLAPNNY 154
Cdd:COG3063    75 -----------YDEALAYLERALELDPSAL 93
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-154 3.43e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 3.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  35 AFVYYRDGMSAQADGEYAEALDNYEEALRLEenpNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAV 114
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELD---PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1909715802 115 IYHFQGekakeagqeddaenLFDKAAEYWKQAIRLAPNNY 154
Cdd:COG2956    85 DYLKAG--------------LLDRAEELLEKLLELDPDDA 110
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 37-121 1.23e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 1.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  37 VYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIY 116
Cdd:COG3914   148 AYLNLGEALRRLGRLEEAIAALRRALEL--DPDN-AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224


                  ....*
gi 1909715802 117 HFQGE 121
Cdd:COG3914   225 RQACD 229
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 32-151 1.38e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 1.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  32 AKEAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNN 111
Cdd:COG5010    51 AKAFAIESPSDNLYNKLGDFEESLALLEQALQL--DPNN-PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1909715802 112 VAVIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAP 151
Cdd:COG5010   128 LAALLLSLGQ--------------DDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 33-141 1.87e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  33 KEAFVYYRDGMSAQADGEYAEALDNYEEALrlEENPNDRSYiLYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNV 112
Cdd:COG2956   142 ENAHAYCELAELYLEQGDYDEAIEALEKAL--KLDPDCARA-LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                          90       100
                  ....*....|....*....|....*....
gi 1909715802 113 AVIYHfqgekakEAGQEDDAENLFDKAAE 141
Cdd:COG2956   219 AELYE-------KLGDPEEALELLRKALE 240
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-153 2.06e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 2.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  20 DIILKILPTNQKAKEAfvYYRDGMSAQADGEYAEALDNYEEALRLEEnpnDRSYILYNMALIHASNGDHEKALGLYQEAI 99
Cdd:COG2956    97 ELLEKLLELDPDDAEA--LRLLAEIYEQEGDWEKAIEVLERLLKLGP---ENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1909715802 100 ELNPKMPSALNNVAVIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGD--------------YEEAIAALERALEQDPDY 211
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
32-153 1.26e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.22  E-value: 1.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  32 AKEAFVYYRDGMSAQADGEYAEALDN----YEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPS 107
Cdd:COG4785    29 LLFAAVLALAIALADLALALAAAALAaaalAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1909715802 108 ALNNVAVIYHFQGEkakeagqeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:COG4785   109 AYNNRGLAYLLLGD--------------YDAALEDFDRALELDPDY 140
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 29-153 7.64e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 7.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  29 NQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLE-------------------------------ENPNDrSYILYN 77
Cdd:TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRApssqnaiklhrallasgntaeavktleawlkTHPND-AVLRTA 775

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1909715802  78 MALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHfqgekakeagQEDDAenlfdKAAEYWKQAIRLAPNN 153
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL----------ELKDP-----RALEYAERALKLAPNI 836
TPR_12 pfam13424
Tetratricopeptide repeat;
35-104 8.62e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 8.62e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1909715802  35 AFVYYRDGMSAQADGEYAEALDNYEEALRLEE---NPNDRSY--ILYNMALIHASNGDHEKALGLYQEAIELNPK 104
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARrllGPDHPLTatTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 22-108 1.62e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.60  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  22 ILKILPTNQKAKEAfvYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIEL 101
Cdd:COG1729    19 FLKRYPNSPLAPDA--LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKK 96


                  ....*..
gi 1909715802 102 NPKMPSA 108
Cdd:COG1729    97 YPDSEAA 103
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 43-152 4.33e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 4.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  43 MSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNP---KMPSALNNVAVIYHFQ 119
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLEL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1909715802 120 GEKakeagqeddaenlfDKAAEYWKQAIRLAPN 152
Cdd:COG1729    81 GDY--------------DKARATLEELIKKYPD 99
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 42-153 7.15e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 45.07  E-value: 7.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   42 GMSAQADGEYAEALDNYEEALRleENPNDrSYILYNMALIHASNGDHEKALGLYQEAIELNPKMP-----SALNNV---- 112
Cdd:PRK11447   276 GLAAVDSGQGGKAIPELQQAVR--ANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSnrdkwESLLKVnryw 352

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1909715802  113 AVIYhfQGEKAKEAGQEDDAENLF--------------------------DKAAE-YWKQAIRLAPNN 153
Cdd:PRK11447   353 LLIQ--QGDAALKANNLAQAERLYqqarqvdntdsyavlglgdvamarkdYAAAErYYQQALRMDPGN 418
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.15e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 1.15e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1909715802  42 GMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 45-159 1.23e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  45 AQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEkak 124
Cdd:COG5010    27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--- 103

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1909715802 125 eagqeddaenlFDKAAEYWKQAIRLAPNNYIEAQN 159
Cdd:COG5010   104 -----------KDEAKEYYEKALALSPDNPNAYSN 127
COG3899 COG3899
Predicted ATPase [General function prediction only];
34-129 3.62e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 43.31  E-value: 3.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   34 EAFVYYRD-GMSAQADGEYAEALDNYEEALRL---EENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELN------- 102
Cdd:COG3899    703 RAARLLLRaARRALARGAYAEALRYLERALELlppDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARalaalaa 782

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1909715802  103 ------PKMPSALNNVAVIYHFQGEKAKEAGQE 129
Cdd:COG3899    783 lrhgnpPASARAYANLGLLLLGDYEEAYEFGEL 815
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 11-141 4.61e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.66  E-value: 4.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  11 IDKSFTVMADIILKILPTNQ-KAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNdRSYIlyNMALIHASNGDHE 89
Cdd:TIGR00990 306 ADESYEEAARAFEKALDLGKlGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT-QSYI--KRASMNLELGDPD 382

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1909715802  90 KALGLYQEAIELNPKMPSalnnvavIYHFQGEKAKEAGQEDDAENLFDKAAE 141
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPD-------IYYHRAQLHFIKGEFAQAGKDYQKSID 427
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 39-141 5.67e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.28  E-value: 5.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  39 YRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSAlnnvaviYHF 118
Cdd:TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS-------YIK 370

                          90       100
                  ....*....|....*....|...
gi 1909715802 119 QGEKAKEAGQEDDAENLFDKAAE 141
Cdd:TIGR00990 371 RASMNLELGDPDKAEEDFDKALK 393
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
81-153 6.46e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 6.46e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGEkakeagqeddaenlFDKAAEYwKQAIRLAPNN 153
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGR--------------YDEAIAL-EKALKLDPNN 58
TPR_1 pfam00515
Tetratricopeptide repeat;
72-104 7.22e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 7.22e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1909715802  72 SYILYNMALIHASNGDHEKALGLYQEAIELNPK 104
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 49-103 1.83e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 1.83e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1909715802  49 GEYAEALDNYEEALRLEENpNDRsyILYNMALIHASNGDHEKALGLYQEAIELNP 103
Cdd:cd24142    14 GNFELALKFLQRALELEPN-NVE--ALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-105 1.93e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 1.93e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1909715802   74 ILYNMALIHASNGDHEKALGLYQEAIELNPKM 105
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-104 2.75e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 2.75e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1909715802  33 KEAFVYYRDGMSAQADGEYAEALDnYEEALRLEENpndRSYILYNMALIHASNGDHEKALGLYQEAIELNPK 104
Cdd:COG3063    24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN---NAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_12 pfam13424
Tetratricopeptide repeat;
70-145 3.65e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 3.65e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1909715802  70 DRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALN-NVAVIYHFQGEKAKEAGQEDDAENLFDKAAEYWKQ 145
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_11 pfam13414
TPR repeat;
81-120 3.97e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 36.30  E-value: 3.97e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1909715802  81 IHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQG 120
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 42-111 4.73e-04

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 39.49  E-value: 4.73e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1909715802  42 GMSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAI-ELNPKMPSALNN 111
Cdd:PLN03098   82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALrDYNLKFSTILND 152
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 75-153 5.25e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.15  E-value: 5.25e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1909715802  75 LYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYhfqgekaKEAGQeddaenlFDKAAEYWKQAIRLAPNN 153
Cdd:cd24142     3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEIL-------LELGD-------VEEAREVLLRAIELDPDG 67
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 73-104 5.40e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 5.40e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1909715802  73 YILYNMALIHASNGDHEKALGLYQEAIELNPK 104
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-163 5.53e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 5.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  28 TNQKAKEAFVYYRDGMSAQADGEYAEALDNYEEALRLEENPNDRSYILynmALIHASNGDHEKALGLYQEAIELNPKMPS 107
Cdd:TIGR02917 390 TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL---ILSYLRSGQFDKALAAAKKLEKKQPDNAS 466

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1909715802 108 ALNNVAVIYHFQGEKAkeagqeddaenlfdKAAEYWKQAIRLAPNNYIEAQNWLKI 163
Cdd:TIGR02917 467 LHNLLGAIYLGKGDLA--------------KAREAFEKALSIEPDFFPAAANLARI 508
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 23-104 6.25e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 6.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  23 LKILPTNQKAKE--AFVYYRDGmsaqadgEYAEALDNYEEALRLeeNPNDrSYILYNMALIHASNGDHEKALGLYQEAIE 100
Cdd:COG4235    44 LRLDPDNADALLdlAEALLAAG-------DTEEAEELLERALAL--DPDN-PEALYLLGLAAFQQGDYAEAIAAWQKLLA 113


                  ....
gi 1909715802 101 LNPK 104
Cdd:COG4235   114 LLPA 117
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-123 6.98e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 6.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  42 GMSAQADGEYAEALDNYEEALRLEenpNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAVIYHFQGE 121
Cdd:COG2956   185 AELYLEQGDYEEAIAALERALEQD---PDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL 261


                  ..
gi 1909715802 122 KA 123
Cdd:COG2956   262 EA 263
COG3899 COG3899
Predicted ATPase [General function prediction only];
35-154 1.78e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 38.30  E-value: 1.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802   35 AFVYYRDGMSAQadGEYAEALDNYEEALRLEE---NPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNN 111
Cdd:COG3899    792 ARAYANLGLLLL--GDYEEAYEFGELALALAErlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALA 869

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1909715802  112 VAVIYHFQGEKAKEAGQEDDAEnlfdkAAEYWKQAIRLAPNNY 154
Cdd:COG3899    870 LLALAAAAAAAAAAAALAAAAA-----AAARLLAAAAAALAAA 907
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-157 2.23e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.29  E-value: 2.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  35 AFVYYRDGMSAQADGEYAEALDNYEEALRLEEnpnDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNVAV 114
Cdd:COG0457   110 AEALYNLGLALLELGRYDEAIEAYERALELDP---DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1909715802 115 IYHFQGEKAKEAGQEDDAENLFDKAAEYWKQAIRLAPNNYIEA 157
Cdd:COG0457   187 ALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-153 2.72e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.37  E-value: 2.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  19 ADIILKILPtnqkaKEAFVYYRDGMSAQADGEYAEALDNYEEALRLeeNPNDRSYILYnMALIHASNGDHEKALGLYQEA 98
Cdd:TIGR02917 250 ADALLKKAP-----NSPLAHYLKALVDFQKKNYEDARETLQDALKS--APEYLPALLL-AGASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1909715802  99 IELNPKMPSALNNVAVIYHFQGEKAKEAGQEDDAENL--------------------FDKAAEYWKQAIRLAPNN 153
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLdpddpaalsllgeaylalgdFEKAAEYLAKATELDPEN 396
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 23-157 9.11e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 35.83  E-value: 9.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  23 LKILPTNQKAKEAFVYYrdgmsAQADGEYAEALDNYEEALrlEENPNDRSYILYNMALIHASnGDHEKALGLYQEAIELN 102
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQL-----ALAENRFDEARALIDEVL--TADPGNVDALLLKGDLLLSL-GNIELALAAYRKAIALR 223

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802 103 PKMPSALNNVAVIYHFQGEKAKeagQEDDAENLFDKA-----AEYWKQAIRLAPNNYIEA 157
Cdd:TIGR02917 224 PNNIAVLLALATILIEAGEFEE---AEKHADALLKKApnsplAHYLKALVDFQKKNYEDA 280
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 43-141 9.75e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 35.56  E-value: 9.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1909715802  43 MSAQADGEYAEALDNYEEALrlEENPND-RSYILynMALIHASNGDHEKALGLYQEAIELNPK-MPSALNNVAVIYHfqg 120
Cdd:PRK11788  188 QQALARGDLDAARALLKKAL--AADPQCvRASIL--LGDLALAQGDYAAAIEALERVEEQDPEyLSEVLPKLMECYQ--- 260

                          90       100
                  ....*....|....*....|.
gi 1909715802 121 ekakEAGQEDDAENLFDKAAE 141
Cdd:PRK11788  261 ----ALGDEAEGLEFLRRALE 277
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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