|
Name |
Accession |
Description |
Interval |
E-value |
| ERI-1_3'hExo_like |
cd06133 |
DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and ... |
68-267 |
1.46e-75 |
|
DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins; This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.
Pssm-ID: 99836 [Multi-domain] Cd Length: 176 Bit Score: 227.87 E-value: 1.46e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDK---PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE 144
Cdd:cd06133 1 YLVIDFEATCWEgnsKPDYPNEIIEIGAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 145 RVDEWMAKEGlldpnvKSIFVTCGDWDLKVMLPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQH 224
Cdd:cd06133 81 EFLEWLGKNG------KYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEFAKFYGLKKRTGLSKALEYLGLEF 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907154147 225 IGRPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTL 267
Cdd:cd06133 155 EGRHHRGL----------------------DDARNIARILKRL 175
|
|
| PTZ00315 |
PTZ00315 |
2'-phosphotransferase; Provisional |
61-277 |
5.33e-47 |
|
2'-phosphotransferase; Provisional
Pssm-ID: 240356 [Multi-domain] Cd Length: 582 Bit Score: 165.45 E-value: 5.33e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 61 PPQRYHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSL 139
Cdd:PTZ00315 51 APQPFDAYVVLDFEATCEADRrIEDAEVIEFPMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVSRADPF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 140 QQVLERVDEWMAKEGLLD--PNVKSIFVTCGDWDLKVMLPGQ---CHYLGLPVAdyFKQWINLKKAYS---FAMGCW--- 208
Cdd:PTZ00315 131 PVVYCEALQFLAEAGLGDapPLRSYCVVTCGDWDLKTMLPSQmrvSGQQGTPLS--FQRWCNLKKYMSqlgFGNGSGcgg 208
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907154147 209 ------PKNGLLDMNKGLSLQHIGRPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTLAYRGFIFKQT 277
Cdd:PTZ00315 209 gatpplGPSDMPDMLQMLGLPLQGRHHSGI----------------------DDCRNIAAVLCELLRRGLVIDPT 261
|
|
| KapD |
COG5018 |
3'-5' exonuclease KapD, inhibitor of KinA-controlled sporulation [Signal transduction ... |
66-267 |
8.32e-45 |
|
3'-5' exonuclease KapD, inhibitor of KinA-controlled sporulation [Signal transduction mechanisms];
Pssm-ID: 444042 [Multi-domain] Cd Length: 181 Bit Score: 149.62 E-value: 8.32e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 66 HYFLVLDFEATC---DKPQIHPQEIIEFPILKLNGRTmEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQV 142
Cdd:COG5018 2 MKYLVIDLEATCwdgKPPPGFPMEIIEIGAVKVDENG-EIIDEFSSFVKPVRRPKLSPFCTELTGITQEDVDSAPSFAEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 143 LERVDEWMAKEglldpnvKSIFVTCGDWDLKVMLPgQCHYLGLPVaDYFKQWINLKKAYSFAMGCwpkNGLLDMNKGLSL 222
Cdd:COG5018 81 IEDFKKWIGSE-------DYILCSWGDYDRKQLER-NCRFHGVPY-PFGDRHINLKKLFALYFGL---KKRIGLKKALEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1907154147 223 QHI---GRPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTL 267
Cdd:COG5018 149 LGLefeGTHHRAL----------------------DDARNTAKLFKKI 174
|
|
| RNase_T |
pfam00929 |
Exonuclease; This family includes a variety of exonuclease proteins, such as ribonuclease T ... |
69-264 |
6.23e-44 |
|
Exonuclease; This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;
Pssm-ID: 395743 [Multi-domain] Cd Length: 164 Bit Score: 146.73 E-value: 6.23e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 69 LVLDFEATCDKPQihPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDE 148
Cdd:pfam00929 1 VVIDLETTGLDPE--KDEIIEIAAVVIDGGENEIGETFHTYVKPTRLPKLTDECTKFTGITQAMLDNKPSFEEVLEEFLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 149 WMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQChylgLPVADYFKQWINLKKAYSFAMGcwpkNGLLDMNKGLSLQHIGRP 228
Cdd:pfam00929 79 FLRKGNLLVAHNASFDVGFLRYDDKRFLKKPM----PKLNPVIDTLILDKATYKELPG----RSLDALAEKLGLEHIGRA 150
|
170 180 190
....*....|....*....|....*....|....*.
gi 1907154147 229 HSGIgqslhkspwqlaqspacmpqspDDCKNIANIM 264
Cdd:pfam00929 151 HRAL----------------------DDARATAKLF 164
|
|
| EXOIII |
smart00479 |
exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other ... |
67-272 |
7.16e-37 |
|
exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases;
Pssm-ID: 214685 [Multi-domain] Cd Length: 169 Bit Score: 128.96 E-value: 7.16e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 67 YFLVLDFEATCDKPQIHpqEIIEFPILKLNGRtmEIESTFHMYVQPvvHPQLTPFCTELTGIIQAMVDGQPSLQQVLERV 146
Cdd:smart00479 1 TLVVIDCETTGLDPGKD--EIIEIAAVDVDGG--EIIEVFDTYVKP--DRPITDYATEIHGITPEMLDDAPTFEEVLEEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 147 DEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCHYlgLPVADYFKqwinLKKAYSFAmgcWPKNGLLDMNKGLSLQHIG 226
Cdd:smart00479 75 LEFLRGRILVAGNSAHFDLRFLKLEHPRLGIKQPPK--LPVIDTLK----LARATNPG---LPKYSLKKLAKRLLLEVIQ 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907154147 227 RPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTLAYRGF 272
Cdd:smart00479 146 RAHRAL----------------------DDARATAKLFKKLLERLE 169
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ERI-1_3'hExo_like |
cd06133 |
DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and ... |
68-267 |
1.46e-75 |
|
DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins; This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.
Pssm-ID: 99836 [Multi-domain] Cd Length: 176 Bit Score: 227.87 E-value: 1.46e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDK---PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE 144
Cdd:cd06133 1 YLVIDFEATCWEgnsKPDYPNEIIEIGAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 145 RVDEWMAKEGlldpnvKSIFVTCGDWDLKVMLPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQH 224
Cdd:cd06133 81 EFLEWLGKNG------KYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEFAKFYGLKKRTGLSKALEYLGLEF 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907154147 225 IGRPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTL 267
Cdd:cd06133 155 EGRHHRGL----------------------DDARNIARILKRL 175
|
|
| PTZ00315 |
PTZ00315 |
2'-phosphotransferase; Provisional |
61-277 |
5.33e-47 |
|
2'-phosphotransferase; Provisional
Pssm-ID: 240356 [Multi-domain] Cd Length: 582 Bit Score: 165.45 E-value: 5.33e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 61 PPQRYHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSL 139
Cdd:PTZ00315 51 APQPFDAYVVLDFEATCEADRrIEDAEVIEFPMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVSRADPF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 140 QQVLERVDEWMAKEGLLD--PNVKSIFVTCGDWDLKVMLPGQ---CHYLGLPVAdyFKQWINLKKAYS---FAMGCW--- 208
Cdd:PTZ00315 131 PVVYCEALQFLAEAGLGDapPLRSYCVVTCGDWDLKTMLPSQmrvSGQQGTPLS--FQRWCNLKKYMSqlgFGNGSGcgg 208
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907154147 209 ------PKNGLLDMNKGLSLQHIGRPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTLAYRGFIFKQT 277
Cdd:PTZ00315 209 gatpplGPSDMPDMLQMLGLPLQGRHHSGI----------------------DDCRNIAAVLCELLRRGLVIDPT 261
|
|
| KapD |
COG5018 |
3'-5' exonuclease KapD, inhibitor of KinA-controlled sporulation [Signal transduction ... |
66-267 |
8.32e-45 |
|
3'-5' exonuclease KapD, inhibitor of KinA-controlled sporulation [Signal transduction mechanisms];
Pssm-ID: 444042 [Multi-domain] Cd Length: 181 Bit Score: 149.62 E-value: 8.32e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 66 HYFLVLDFEATC---DKPQIHPQEIIEFPILKLNGRTmEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQV 142
Cdd:COG5018 2 MKYLVIDLEATCwdgKPPPGFPMEIIEIGAVKVDENG-EIIDEFSSFVKPVRRPKLSPFCTELTGITQEDVDSAPSFAEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 143 LERVDEWMAKEglldpnvKSIFVTCGDWDLKVMLPgQCHYLGLPVaDYFKQWINLKKAYSFAMGCwpkNGLLDMNKGLSL 222
Cdd:COG5018 81 IEDFKKWIGSE-------DYILCSWGDYDRKQLER-NCRFHGVPY-PFGDRHINLKKLFALYFGL---KKRIGLKKALEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1907154147 223 QHI---GRPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTL 267
Cdd:COG5018 149 LGLefeGTHHRAL----------------------DDARNTAKLFKKI 174
|
|
| RNase_T |
pfam00929 |
Exonuclease; This family includes a variety of exonuclease proteins, such as ribonuclease T ... |
69-264 |
6.23e-44 |
|
Exonuclease; This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;
Pssm-ID: 395743 [Multi-domain] Cd Length: 164 Bit Score: 146.73 E-value: 6.23e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 69 LVLDFEATCDKPQihPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDE 148
Cdd:pfam00929 1 VVIDLETTGLDPE--KDEIIEIAAVVIDGGENEIGETFHTYVKPTRLPKLTDECTKFTGITQAMLDNKPSFEEVLEEFLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 149 WMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQChylgLPVADYFKQWINLKKAYSFAMGcwpkNGLLDMNKGLSLQHIGRP 228
Cdd:pfam00929 79 FLRKGNLLVAHNASFDVGFLRYDDKRFLKKPM----PKLNPVIDTLILDKATYKELPG----RSLDALAEKLGLEHIGRA 150
|
170 180 190
....*....|....*....|....*....|....*.
gi 1907154147 229 HSGIgqslhkspwqlaqspacmpqspDDCKNIANIM 264
Cdd:pfam00929 151 HRAL----------------------DDARATAKLF 164
|
|
| EXOIII |
smart00479 |
exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other ... |
67-272 |
7.16e-37 |
|
exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases;
Pssm-ID: 214685 [Multi-domain] Cd Length: 169 Bit Score: 128.96 E-value: 7.16e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 67 YFLVLDFEATCDKPQIHpqEIIEFPILKLNGRtmEIESTFHMYVQPvvHPQLTPFCTELTGIIQAMVDGQPSLQQVLERV 146
Cdd:smart00479 1 TLVVIDCETTGLDPGKD--EIIEIAAVDVDGG--EIIEVFDTYVKP--DRPITDYATEIHGITPEMLDDAPTFEEVLEEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 147 DEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCHYlgLPVADYFKqwinLKKAYSFAmgcWPKNGLLDMNKGLSLQHIG 226
Cdd:smart00479 75 LEFLRGRILVAGNSAHFDLRFLKLEHPRLGIKQPPK--LPVIDTLK----LARATNPG---LPKYSLKKLAKRLLLEVIQ 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907154147 227 RPHSGIgqslhkspwqlaqspacmpqspDDCKNIANIMKTLAYRGF 272
Cdd:smart00479 146 RAHRAL----------------------DDARATAKLFKKLLERLE 169
|
|
| PRK07748 |
PRK07748 |
3'-5' exonuclease KapD; |
68-200 |
1.30e-15 |
|
3'-5' exonuclease KapD;
Pssm-ID: 236087 Cd Length: 207 Bit Score: 73.57 E-value: 1.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDKPQIHPQ----EIIEFPILKLNGRtmEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVL 143
Cdd:PRK07748 6 FLFLDFEFTMPQHKKKPKgffpEIIEVGLVSVVGC--EVEDTFSSYVKPKTFPSLTERCKSFLGITQEDVDKGISFEELV 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907154147 144 ERVDEwmakeglLDPNVKSIFVTCGDWDLKVM--------LP----GQCHYLGLPVADYF--KQWINLKKA 200
Cdd:PRK07748 84 EKLAE-------YDKRCKPTIVTWGNMDMKVLkhncekagVPfpfkGQCRDLSLEYKKFFgeRNQTGLWKA 147
|
|
| PolC |
COG2176 |
DNA polymerase III, alpha subunit (gram-positive type) [Replication, recombination and repair]; ... |
68-150 |
2.81e-11 |
|
DNA polymerase III, alpha subunit (gram-positive type) [Replication, recombination and repair];
Pssm-ID: 441779 [Multi-domain] Cd Length: 181 Bit Score: 60.93 E-value: 2.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDKPQIHpqEIIEFPILKLNGrtMEIESTFHMYVQPvvHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVD 147
Cdd:COG2176 10 YVVFDLETTGLSPKKD--EIIEIGAVKVEN--GEIVDRFSTLVNP--GRPIPPFITELTGITDEMVADAPPFEEVLPEFL 83
|
...
gi 1907154147 148 EWM 150
Cdd:COG2176 84 EFL 86
|
|
| DnaQ |
COG0847 |
DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination ... |
68-151 |
4.88e-10 |
|
DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair];
Pssm-ID: 440608 [Multi-domain] Cd Length: 163 Bit Score: 57.11 E-value: 4.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDKPQIHpqEIIEFPILKLNGRtmEIESTFHMYVQPvvHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVD 147
Cdd:COG0847 2 FVVLDTETTGLDPAKD--RIIEIGAVKVDDG--RIVETFHTLVNP--ERPIPPEATAIHGITDEDVADAPPFAEVLPELL 75
|
....
gi 1907154147 148 EWMA 151
Cdd:COG0847 76 EFLG 79
|
|
| polC |
PRK00448 |
DNA polymerase III PolC; Validated |
68-150 |
9.70e-10 |
|
DNA polymerase III PolC; Validated
Pssm-ID: 234767 [Multi-domain] Cd Length: 1437 Bit Score: 59.08 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDKPQIHpqEIIEFPILKL-NGrtmEIESTFHMYVQPvvHPQLTPFCTELTGIIQAMVDGQPSLQQVLERV 146
Cdd:PRK00448 421 YVVFDVETTGLSAVYD--EIIEIGAVKIkNG---EIIDKFEFFIKP--GHPLSAFTTELTGITDDMVKDAPSIEEVLPKF 493
|
....
gi 1907154147 147 DEWM 150
Cdd:PRK00448 494 KEFC 497
|
|
| PRK08517 |
PRK08517 |
3'-5' exonuclease; |
68-145 |
1.18e-05 |
|
3'-5' exonuclease;
Pssm-ID: 236281 [Multi-domain] Cd Length: 257 Bit Score: 45.78 E-value: 1.18e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907154147 68 FLVLDFEATCDKPQIHpqEIIEFPILKLNGRtmEIESTFHMYVQPvvhPQLTPFCTELTGIIQAMVDGQPSLQQVLER 145
Cdd:PRK08517 70 FCFVDIETNGSKPKKH--QIIEIGAVKVKNG--EIIDRFESFVKA---KEVPEYITELTGITYEDLENAPSLKEVLEE 140
|
|
| PRK07883 |
PRK07883 |
DEDD exonuclease domain-containing protein; |
68-149 |
1.44e-05 |
|
DEDD exonuclease domain-containing protein;
Pssm-ID: 236123 [Multi-domain] Cd Length: 557 Bit Score: 46.06 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDKPqiHPQEIIEFPILKLNGRtmEIESTFHMYVQPVVhpQLTPFCTELTGIIQAMVDGQPSLQQVLERVD 147
Cdd:PRK07883 17 FVVVDLETTGGSP--AGDAITEIGAVKVRGG--EVLGEFATLVNPGR--PIPPFITVLTGITTAMVAGAPPIEEVLPAFL 90
|
..
gi 1907154147 148 EW 149
Cdd:PRK07883 91 EF 92
|
|
| PRK07740 |
PRK07740 |
hypothetical protein; Provisional |
68-145 |
2.36e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 236085 [Multi-domain] Cd Length: 244 Bit Score: 44.66 E-value: 2.36e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907154147 68 FLVLDFEATCDKPQiHPQEIIEFPILKLNGRTMEiESTFHMYVQPVVHPqlTPFCTELTGIIQAMVDGQPSLQQVLER 145
Cdd:PRK07740 61 FVVFDLETTGFSPQ-QGDEILSIGAVKTKGGEVE-TDTFYSLVKPKRPI--PEHILELTGITAEDVAFAPPLAEVLHR 134
|
|
| PRK06722 |
PRK06722 |
exonuclease; Provisional |
67-175 |
5.22e-05 |
|
exonuclease; Provisional
Pssm-ID: 180670 [Multi-domain] Cd Length: 281 Bit Score: 43.89 E-value: 5.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 67 YFLVLDFEATCdKP--QIHPQEIIEFPILKLNGRTMEIESTFHMYVQPvvHPQLTPFCTELTGIIQAMVDGQPSLQQVLE 144
Cdd:PRK06722 6 HFIVFDIERNF-RPykSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP--GARLTRHTTKLTGITKKDLIGVEKFPQIIE 82
|
90 100 110
....*....|....*....|....*....|.
gi 1907154147 145 RVDEWMAKEglldpnvkSIFVTCGDWDLKVM 175
Cdd:PRK06722 83 KFIQFIGED--------SIFVTWGKEDYRFL 105
|
|
| PRK08074 |
PRK08074 |
bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated |
68-146 |
8.51e-05 |
|
bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Pssm-ID: 236148 [Multi-domain] Cd Length: 928 Bit Score: 43.79 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 68 FLVLDFEATCDKPQiHPQEIIEFPILKL-NGRTMEIESTFhmyvqpvVHPQ--LTPFCTELTGIIQAMVDGQPSLQQVLE 144
Cdd:PRK08074 5 FVVVDLETTGNSPK-KGDKIIQIAAVVVeDGEILERFSSF-------VNPErpIPPFITELTGISEEMVKQAPLFEDVAP 76
|
..
gi 1907154147 145 RV 146
Cdd:PRK08074 77 EI 78
|
|
| PRK09182 |
PRK09182 |
DNA polymerase III subunit epsilon; Validated |
57-147 |
1.57e-03 |
|
DNA polymerase III subunit epsilon; Validated
Pssm-ID: 236397 [Multi-domain] Cd Length: 294 Bit Score: 39.19 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907154147 57 MVPFPPQRYHYFLVLDFEATCDKPQIHpqEIIEFPILK----LNGRTMEIESTFHMYVQPVVhpQLTPFCTELTGIIQAM 132
Cdd:PRK09182 28 YPAPRGEFVRLGVILDTETTGLDPRKD--EIIEIGMVAfeydDDGRIGDVLDTFGGLQQPSR--PIPPEITRLTGITDEM 103
|
90
....*....|....*....
gi 1907154147 133 VDGQ----PSLQQVLERVD 147
Cdd:PRK09182 104 VAGQtidpAAVDALIAPAD 122
|
|
| PRK06807 |
PRK06807 |
3'-5' exonuclease; |
68-143 |
3.75e-03 |
|
3'-5' exonuclease;
Pssm-ID: 235864 [Multi-domain] Cd Length: 313 Bit Score: 38.26 E-value: 3.75e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907154147 68 FLVLDFEATCDKPqiHPQEIIEFPILKLngRTMEIESTFHMYVQPVVHpqLTPFCTELTGIIQAMVDGQPSLQQVL 143
Cdd:PRK06807 10 YVVIDFETTGFNP--YNDKIIQVAAVKY--RNHELVDQFVSYVNPERP--IPDRITSLTGITNYRVSDAPTIEEVL 79
|
|
|