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Conserved domains on  [gi|1904806555|ref|YP_009919804|]
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Nad4L (mitochondrion) [Metschnikowia agaves]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
13-78 6.64e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00180:

Pssm-ID: 444937  Cd Length: 99  Bit Score: 40.40  E-value: 6.64e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1904806555 13 MSKNNMMTMLMGMEMLLLTVTVKMMYVSGYYDDMHGMMYSMMIMLLAGAESAMGLSMLVSYYRLRG 78
Cdd:MTH00180  22 LNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRG 87
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 13-78 6.64e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 40.40  E-value: 6.64e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1904806555 13 MSKNNMMTMLMGMEMLLLTVTVKMMYVSGYYDDMHGMMYSMMIMLLAGAESAMGLSMLVSYYRLRG 78
Cdd:MTH00180  22 LNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRG 87
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 13-78 6.64e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 40.40  E-value: 6.64e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1904806555 13 MSKNNMMTMLMGMEMLLLTVTVKMMYVSGYYDDMHGMMYSMMIMLLAGAESAMGLSMLVSYYRLRG 78
Cdd:MTH00180  22 LNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRG 87
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
 13-81 4.62e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 35.67  E-value: 4.62e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1904806555 13 MSKNNMMTMLMGMEMLLLTVTVKMMYVSGYYDDMHGMMYSMMIMLLAGAESAMGLSMLVSYYRLRGKMT 81
Cdd:MTH00192  22 INKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGTIT 90
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
32-79 5.65e-04

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 35.54  E-value: 5.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1904806555  32 VTVKMMYVSGYYDDMHGMMYSMMIMLLAGAESAMGLSMLVSYYRLRGK 79
Cdd:PRK05715   42 VNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGT 89
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 37-80 7.42e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 35.04  E-value: 7.42e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1904806555 37 MYVSGYYDDMHGMMYSMMIMLLAGAESAMGLSMLVSYYRLRGKM 80
Cdd:MTH00001  46 LINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTI 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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