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Conserved domains on  [gi|1904806545|ref|YP_009919794|]
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Nad3 (mitochondrion) [Metschnikowia agaves]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-110 6.81e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


:

Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.95  E-value: 6.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  17 ILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILIIFFLTL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1904806545  97 ITAFIYEINTNALN 110
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-110 6.81e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.95  E-value: 6.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  17 ILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILIIFFLTL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1904806545  97 ITAFIYEINTNALN 110
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-110 8.10e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 68.22  E-value: 8.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  11 IMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILI 90
Cdd:COG0838    17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLIEML 96

                          90       100
                  ....*....|....*....|
gi 1904806545  91 IFFLTLITAFIYEINTNALN 110
Cdd:COG0838    97 VFIAILLVGLIYAWKKGALE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-103 1.73e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 65.00  E-value: 1.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYF 80
Cdd:MTH00042    3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                          90       100
                  ....*....|....*....|....
gi 1904806545  81 NNLYGLTILIIFFLTLITA-FIYE 103
Cdd:MTH00042   83 TNPSTLLPISLIFLIILTIgLVYE 106
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-110 6.81e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.95  E-value: 6.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  17 ILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILIIFFLTL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1904806545  97 ITAFIYEINTNALN 110
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-110 8.10e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 68.22  E-value: 8.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  11 IMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILI 90
Cdd:COG0838    17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLIEML 96

                          90       100
                  ....*....|....*....|
gi 1904806545  91 IFFLTLITAFIYEINTNALN 110
Cdd:COG0838    97 VFIAILLVGLIYAWKKGALE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-103 1.73e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 65.00  E-value: 1.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYF 80
Cdd:MTH00042    3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                          90       100
                  ....*....|....*....|....
gi 1904806545  81 NNLYGLTILIIFFLTLITA-FIYE 103
Cdd:MTH00042   83 TNPSTLLPISLIFLIILTIgLVYE 106
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-110 2.64e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 64.49  E-value: 2.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLtpIMACMLILTNYLISTSNSYI-----EKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYV 75
Cdd:MTH00148    1 MLSILLSL--LFALILSPVLLLLGLVLSKRsysdrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVL 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1904806545  76 IS-AYFNNLYGLTILIIFFLTLITAFIYEINTNALN 110
Cdd:MTH00148   79 QSlGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLD 114
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-110 3.89e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 63.64  E-value: 3.89e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSY-IEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISA- 78
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFk 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1904806545  79 YFNNLYGLTILIIFFLTLITAFIYEINTNALN 110
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALE 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-103 9.00e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 63.09  E-value: 9.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYF 80
Cdd:MTH00069    1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100
                  ....*....|....*....|....
gi 1904806545  81 NNLYGLTILIIFFLTLITA-FIYE 103
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLgLIYE 104
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 14-109 3.10e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 61.80  E-value: 3.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  14 CMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILIIFF 93
Cdd:PRK06602   23 ILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFI 102

                          90
                  ....*....|....*.
gi 1904806545  94 LTLITAFIYEINTNAL 109
Cdd:PRK06602  103 LVLLVGLVYLWRKGAL 118
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 11-99 5.60e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 60.72  E-value: 5.60e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  11 IMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILI 90
Cdd:MTH00106   12 LLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMA 91


                  ....*....
gi 1904806545  91 IFFLTLITA 99
Cdd:MTH00106   92 LLLISLLAL 100
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-103 1.41e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 60.11  E-value: 1.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   4 FYLYLTPIMACMLIL-TNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNN 82
Cdd:MTH00055    9 FILLLFSIGLSTVISgASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIG 88

                          90       100
                  ....*....|....*....|.
gi 1904806545  83 LYGLTILIIFFLTLITAFIYE 103
Cdd:MTH00055   89 LFGFWVMYLFLIILTIGLIYE 109
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-110 3.32e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 58.76  E-value: 3.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILT-NYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAY 79
Cdd:MTH00203    2 NLIMLFFLIALLLSLILLFiAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQ 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1904806545  80 FNnlYGLTILIIFFLTLIT-AFIYEINTNALN 110
Cdd:MTH00203   82 LS--SLSLLLAFLFLILLTlGLIYEWLQGGLE 111
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-109 6.18e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 57.97  E-value: 6.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYF 80
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 1904806545  81 NN-LYGLTILIIFFLTLITAFIYEINTNAL 109
Cdd:MTH00113   82 TTpTTTLTWATIILTLLTLGLIYEWLQGGL 111
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-110 9.08e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 57.69  E-value: 9.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYI--EKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISA 78
Cdd:MTH00202    2 LLILFMSILSILISSLLFLVSWMLSFRSLMdrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1904806545  79 -YFNNLYGLTILIIFFLTLITAFIYEINTNALN 110
Cdd:MTH00202   82 kSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLD 114
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-103 1.82e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 56.99  E-value: 1.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   4 FYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNL 83
Cdd:MTH00018    5 ILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAP 84

                          90       100
                  ....*....|....*....|
gi 1904806545  84 YGLTILIIFFLTLITAFIYE 103
Cdd:MTH00018   85 FGFWTMVGFLFILTLGLIYE 104
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-73 3.26e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 53.77  E-value: 3.26e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILP 73
Cdd:MTH00136    3 LITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLP 75
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 22-110 1.67e-08

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 49.47  E-value: 1.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  22 LISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPY----VISAYFNNLYGltiLIIFFLTLI 97
Cdd:MTH00012   25 LAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVptilMTSTSKTVVYT---SILFLLILV 101

                          90
                  ....*....|...
gi 1904806545  98 TAFIYEINTNALN 110
Cdd:MTH00012  102 IGLIHEWREGSLD 114
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 18-103 2.02e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 49.16  E-value: 2.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545  18 LTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYFNNLYGLTILIIFFLTLI 97
Cdd:MTH00030   29 LGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLA 108


                  ....*.
gi 1904806545  98 TAFIYE 103
Cdd:MTH00030  109 IGLAYE 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-96 8.24e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.80  E-value: 8.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904806545   1 MFTFYLYLTPIMACMLILTNYLISTSNSYIEKNGPFECGFTSYQQSRSAFSVAFILVAILFLPFDLEISSILPYVISAYF 80
Cdd:MTH00092    3 VLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFS 82

                          90
                  ....*....|....*.
gi 1904806545  81 NNLYGLTILIIFFLTL 96
Cdd:MTH00092   83 SLISFFMLMIFIFFGF 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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