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Conserved domains on  [gi|1904804565|ref|YP_009917606|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Lagenorhynchus acutus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 9.12e-179

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 498.99  E-value: 9.12e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFYHT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*.
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPALFIL 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 9.12e-179

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 498.99  E-value: 9.12e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFYHT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*.
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPALFIL 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-298 1.48e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.91  E-value: 1.48e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEMnmMAI---IPIMMKKPNPRATEASTKYFLTQATASSLLML---------------AIIINLM 79
Cdd:COG1007   116 MLMASANDLLTLFLGLEL--LSLslyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlaGIAAALA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  80 HSSQWTIMKLFdptASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQI------SPSINLHL 153
Cdd:COG1007   194 AGGANSPLLLL---GLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 154 MIT-MSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTL----TLLNLLIYIVMTFTMFMLLIQNSTTTTL 228
Cdd:COG1007   271 LLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1904804565 229 LLSQT-----WNTTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAY 298
Cdd:COG1007   351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 2.71e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 111.25  E-value: 2.71e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  23 SSHWLFAWIGLEMNMMAIIPIM-MKKPNPRATEASTKYFLTQATASSLLMLAIII--NLMHSSQWTIMKLFDPT------ 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmyNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  94 ---ASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILL-TWQKLAPISI-----LYQISPSINLHLMITMSFLSILI 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTAILL----YSPTLTLLNLLIYIVMTFTMF-----MLLIQNSTTTTLLLSQTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1904804565 236 TTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-297 1.29e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.10  E-value: 1.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEMNMMAI-IPIMMKKPNPRATEASTKYFLTQATASSLLMLAI--------------IINLMHSS 82
Cdd:TIGR01770 116 FLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfedLLLFLSNG 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  83 QWTIMKLFdpTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSI------NLHLMI- 155
Cdd:TIGR01770 196 MLNISLLL--LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseAWQIFLa 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 156 TMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGW-MTAILLYSPTL---TLLNLLIYIVMTFTMFMLLI------QNSTT 225
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLSllrsykDEWIE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1904804565 226 TTLLLSQTWNTTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLA 297
Cdd:TIGR01770 354 YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 9.12e-179

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 498.99  E-value: 9.12e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFYHT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*.
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPALFIL 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 1.21e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 389.55  E-value: 1.21e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSiNLHLMITMSFL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFYHT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPALFILL 347
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-347 9.70e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 356.92  E-value: 9.70e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFyHT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                         330       340
                  ....*....|....*....|....*..
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPALFILL 347
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 6.08e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 354.90  E-value: 6.08e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFYHt 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP- 319

                         330       340
                  ....*....|....*....|...
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPAL 343
Cdd:MTH00112  320 KKNTLTATLTTLSTLLLPLSPMI 342
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-344 3.73e-90

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 273.73  E-value: 3.73e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPS-----TNNMKMKW 315
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsislFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*....
gi 1904804565 316 QFYHTKQMTLLPTAIVLSTMLLPLTPALF 344
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 1.38e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 269.92  E-value: 1.38e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFYHT 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*..
gi 1904804565 321 KQMtLLPTAIVLSTMLLPLTPALFILL 347
Cdd:MTH00200  321 SNL-LVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 18-315 6.69e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 180.08  E-value: 6.69e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMHSSQWTIMklfdptasIL 97
Cdd:MTH00144   18 LLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  98 MTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINL-HLMITMSFLSILIGGWGGLNQTQLR 176
Cdd:MTH00144   90 LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVR 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 177 KIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTwNTTPVMTTFTMLTLLSMGGLPP 256
Cdd:MTH00144  170 ALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSLGGLPP 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1904804565 257 LTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKW 315
Cdd:MTH00144  249 FLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-346 2.80e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.78  E-value: 2.80e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565   1 MNPFVSITLLTTLILSTMIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 ssqwtIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQIspsINLHLMITMSFL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVM 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYStalTLFPSTNNMKMKWQFYHT 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309

                         330       340
                  ....*....|....*....|....*.
gi 1904804565 321 KQMTLLPTAIVLSTMLLPLTPALFIL 346
Cdd:MTH00160  310 KFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 18-299 2.88e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.64  E-value: 2.88e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMHSSQWTImklfdpTASIL 97
Cdd:MTH00011   20 LMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN------ITALM 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  98 MTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFLSILIGGWGGLNQTQLRK 177
Cdd:MTH00011   94 LLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRP 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 178 IMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVMTTFTMLTLLSMGGLPPL 257
Cdd:MTH00011  174 LLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPF 253

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1904804565 258 TGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYS 299
Cdd:MTH00011  254 TGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 23-318 1.92e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.12  E-value: 1.92e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  23 SSHWLFAWIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLmlaiiinLMHSSQWTIMKLFDPTASILMTMAL 102
Cdd:MTH00197   17 SSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALL-------LMGGSLSFSNLYLSLLSVVLVILGL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 103 AIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMitMSFLSILIGGWGGLNQTQLRKIMAYS 182
Cdd:MTH00197   90 LLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLI--CSVLSSLIGGIGGMNQSNIRQLLAYS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 183 SIAHMGWMTAILLYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWNTTPVMTTFTMLTLLSMGGLPPLTGFMP 262
Cdd:MTH00197  168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1904804565 263 KWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQFY 318
Cdd:MTH00197  248 KWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLY 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-298 1.48e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.91  E-value: 1.48e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEMnmMAI---IPIMMKKPNPRATEASTKYFLTQATASSLLML---------------AIIINLM 79
Cdd:COG1007   116 MLMASANDLLTLFLGLEL--LSLslyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlaGIAAALA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  80 HSSQWTIMKLFdptASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQI------SPSINLHL 153
Cdd:COG1007   194 AGGANSPLLLL---GLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 154 MIT-MSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTL----TLLNLLIYIVMTFTMFMLLIQNSTTTTL 228
Cdd:COG1007   271 LLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1904804565 229 LLSQT-----WNTTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAY 298
Cdd:COG1007   351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 2.71e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 111.25  E-value: 2.71e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  23 SSHWLFAWIGLEMNMMAIIPIM-MKKPNPRATEASTKYFLTQATASSLLMLAIII--NLMHSSQWTIMKLFDPT------ 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmyNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  94 ---ASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILL-TWQKLAPISI-----LYQISPSINLHLMITMSFLSILI 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTAILL----YSPTLTLLNLLIYIVMTFTMF-----MLLIQNSTTTTLLLSQTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1904804565 236 TTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 23-296 4.40e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 112.43  E-value: 4.40e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  23 SSHWLFAWIGLEMNMMAI-IPIMMKKPNPRATEASTKYFLTQATASSLLMLAI-------------IINLMHSSQWTIMK 88
Cdd:MTH00196   12 SSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVLNSGQSFSS 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  89 LFDPTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMsfLSILIGGWG 168
Cdd:MTH00196   92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGL--FSLFVGAIG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 169 GLNQTQLRKIMAYSSIAHMGWMTAIL----LYSPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLLL--SQTWNTTPVMTT 242
Cdd:MTH00196  170 ALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIefSGLSRRLPILAI 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1904804565 243 FTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRL 296
Cdd:MTH00196  250 TLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 18-296 6.45e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 113.19  E-value: 6.45e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEM-NMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMHSSQWTIMK----LFDP 92
Cdd:MTH00199  111 LLLVSSINWLSIYLAIELqTLTLFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGinsiLTGD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  93 TASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMsfLSILIGGWGGLNQ 172
Cdd:MTH00199  191 VGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAV--LSIIYGAIGALNQ 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 173 TQLRKIMAYSSIAHMGWMTAILLY----SPTLTLLNLLIYIVMTFTMFMLLIQNSTTTTLL--LSQTWNTTPVMTTFTML 246
Cdd:MTH00199  269 TKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIILSLKLTKGLIveVSGLSRKNPVIALTLAL 348

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1904804565 247 TLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRL 296
Cdd:MTH00199  349 TFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
18-296 1.34e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 101.05  E-value: 1.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISS-HWLFAWIGLE-MNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLML---------------AIIINLMH 80
Cdd:PRK05777  116 MMVMVSAnDLLTLFLGLElLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygatgslsfaGIAKALAD 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  81 SSQWTIMKLFdptASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPIS----ILYQISPSINLH---L 153
Cdd:PRK05777  196 GSGNSLLLLF---GLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 154 MITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTL----TLLNLLIYIVMT---FTMFMLLIQNSTTT 226
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTlgaFGVISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1904804565 227 TLLLSqtWN----TTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRL 296
Cdd:PRK05777  353 ESISD--FAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-297 1.29e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.10  E-value: 1.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  18 MIVTISSHWLFAWIGLEMNMMAI-IPIMMKKPNPRATEASTKYFLTQATASSLLMLAI--------------IINLMHSS 82
Cdd:TIGR01770 116 FLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfedLLLFLSNG 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  83 QWTIMKLFdpTASILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSI------NLHLMI- 155
Cdd:TIGR01770 196 MLNISLLL--LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseAWQIFLa 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 156 TMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGW-MTAILLYSPTL---TLLNLLIYIVMTFTMFMLLI------QNSTT 225
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLSllrsykDEWIE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1904804565 226 TTLLLSQTWNTTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLA 297
Cdd:TIGR01770 354 YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 1.99e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.81  E-value: 1.99e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  30 WIGLEMNMMAIIPIMMKKPNPRATEASTKYFLTQATASSLLMLAIIINLMHSSQWTI------MKLFDP----TASILMT 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMadlaarLAELDPglllAAFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 100 MALAIKLGLSPFHFWVPE-----------VTQGIPLSTGL--ILLTWQKLAPISILYQISPsinlhLMITMSFLSILIGG 166
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGA 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 167 WGGLNQTQLRKIMAYSSIAHMGWMT-AILLYSPTLT---LLNLLIYIVMTFTMFM----LLIQNSTTTTLLLSQTWNTTP 238
Cdd:COG0651   288 LGALAQRDLKRLLAYSSVSQIGYILlGLGLGTPLGLagaLFHLLNHALAKALLFLaagaIERATGTRDLDKLGGLGKRMP 367

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1904804565 239 VMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRL 296
Cdd:COG0651   368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 96-267 4.82e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 66.81  E-value: 4.82e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  96 ILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILyqISPSINLHLMITMSFLSILIGGWGGLNQTQL 175
Cdd:MTH00198  303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 176 RKIMAYSSIAHMGWmtaILLYSPTLTLLNL-------LIYIVMTFTMFMLLIQNSTTTTLLLSQT--------WNTTPVM 240
Cdd:MTH00198  381 KRLLAYSGIGHIGF---ILIGVSAGTYESLqaswtyaVTYLVSALASFTVICTLEEFGTRTPTSRqrdgsfgnYNLVRRL 457

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1904804565 241 TTFTMLT-------------LLSMGGLPPLTGFMPKWMII 267
Cdd:MTH00198  458 VDLTILSrgqpyiafslaivFLSLAGIPPLLGFLGKWFIL 497
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 1.23e-11

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 58.81  E-value: 1.23e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1904804565 291 YFYMRLAYSTALTLFPSTNNMKMKWQFYHTKQMTLLPTAIVLSTMLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
47-295 4.73e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 4.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  47 KPNPRATEASTKYFLTQATAS-------SLLM--------LAIIINLMHSSQWTIMKLfdptASILMTMALAIKLGLSPF 111
Cdd:PRK02504  154 KRDPRSNEAALKYLLIGAASSaiflygsSLLYglsggstqLSAIALALITSPSLGLAL----ALVFVIAGIAFKISAVPF 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 112 HFWVPEVTQGIPLSTGLILLTWQKLA----PISILYQISPSIN--LHLMIT-MSFLSILIGGWGGLNQTQLRKIMAYSSI 184
Cdd:PRK02504  230 HQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDeqWKLLFTaLAILSMVLGNVVALAQTSMKRMLAYSSI 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 185 AHMGWMTAILL------YSPTLtlLNLLIYIVMTFTMFMLLIQNSTTT----TLLLSQTWNTTPVMTTFTMLTLLSMGGL 254
Cdd:PRK02504  310 GQAGFVMIGLVagteagYASMV--FYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGI 387

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1904804565 255 PPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMR 295
Cdd:PRK02504  388 PPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 8.67e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 59.63  E-value: 8.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  51 RATEASTKYFLTQATASSLLM---------------LAIIINLMHSSQwtimkLFDPTAS----ILMTMALAIKLGLSPF 111
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLINTQ-----MYNSPGIsialIFITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 112 HFWVPEVTQGIPLSTGLILLTWQKLAPIS--------ILYQISPSINLHLMItMSFLSILIGGWGGLNQTQLRKIMAYSS 183
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLLEI-LAILSMILGNLIAITQTSMKRMLAYSS 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 184 IAHMGWMTAILL-------YSPTLTLLnlLIYIVMTFTMFMLLIQNSTTT----TLLLSQTWNTTPVMTTFTMLTLLSMG 252
Cdd:CHL00049  313 IGQIGYVIIGIIvgdsndgYASMITYM--LFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLG 390

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1904804565 253 GLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRL 296
Cdd:CHL00049  391 GIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-299 1.01e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.73  E-value: 1.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  50 PRATEASTKYFLTQATASSLLMLAIII-----NLMHSSQWTIMKLFDPT-----ASILMTMALAIKLGLSPFHFWVPEVT 119
Cdd:PRK08376  168 WEAIEAGIKYMFVGSLASSMVLLGIALlygqyGTLNMAYLAVKMSENPTvvakiALALFIAGLAMKSGAVPVHMWLPDAY 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 120 QGIPLSTGLILLTwQKLAPISILYQIS-----PSINLH----LMITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWM 190
Cdd:PRK08376  248 PAAPSSISAMLLV-IKQAGLYALARVLfsiygPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYM 326

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 191 -----TAILLYSPTL------TLLNLLIYIVMTFTMFMLLIQNSTTTTLLLSQTWN---------TTPVMTTFTMLTLLS 250
Cdd:PRK08376  327 llglgVGLAALGDPAmasygeIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNlnelgglarTMPKTTIAFLIGAAA 406

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1904804565 251 MGGLPPLTGFMPKWMIIqELTKNDTLILPTLMAITALLNLYFYMRLAYS 299
Cdd:PRK08376  407 IVGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFHT 454
PRK12650 PRK12650
DUF4040 family protein;
78-263 1.38e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.59  E-value: 1.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  78 LMHSSQWTIMKLFDPTASILMTMALAIKLGLSPFHFWVPEVTQGI-PLSTGLILLTWQKlAPISILYQISP-----SINL 151
Cdd:PRK12650  194 ILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAItPVSAFLHAAAVVK-AGIYLLLRFSPvfhdvAVWN 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 152 HLMITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTA-ILLYSP---TLTLLNLLIYIVMTFTMFMLL----IQNS 223
Cdd:PRK12650  273 WLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVAtIGVGTPfalTAAVVHTLAHALFKSSLFMLIgvvdHQAG 352

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1904804565 224 TTTTLLLSQTWNTTPVmtTFTMLTL--LSMGGLPPLTGFMPK 263
Cdd:PRK12650  353 TRDIRRLGSLWRRMPF--TFVSVTIaaLSMAAVPPLFGFVSK 392
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-288 1.93e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.47  E-value: 1.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  55 ASTKYFLTQATASSLLMLAIIINLMHSSQWT-----IMKL-FDPTASIL----MTMALAIKLGLSPFHFWVPEVTQGIPL 124
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaeLAAApLPLTAQLLlflaFFIAFAVKVPMFPFHTWLPDAHVEAPT 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 125 STGLIL---------------------LTWQKLAPIsilyqispsinlhlMITMSFLSILIGGWGGLNQTQLRKIMAYSS 183
Cdd:COG1008   242 AGSVLLagvllkmggygllrfalplfpEASAYFAPL--------------LAALGVIGIIYGALVALAQTDLKRLIAYSS 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 184 IAHMGWMTAILLyspTLTLLNL---LIYIV----MTFTMFML--LIQNST--TTTLLLSQTWNTTPVMTTFTMLTLLSMG 252
Cdd:COG1008   308 VSHMGFVLLGIF---ALNPLGLqgaVLQMVshglITAALFLLvgVLYDRThtRDIADLGGLAKRMPVLAALFLLAALASL 384

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1904804565 253 GLPPLTGFMPKWMIIQELTKNDTLIlpTLMAITALL 288
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWL--AILAALGLI 418
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-268 6.69e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.79  E-value: 6.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  55 ASTKYFLTQAtASSLLMLAIIINLMHSSQWT-----IMKLFDPTASILMTM-----ALAIKLGLSPFHFWVPEV-----T 119
Cdd:TIGR01972 157 AAMKFFLYTL-AGSLLMLLAILGLYFLGGGTfdlleLLNLPLPFGVQTWLFlaffiAFAVKVPLFPLHTWLPDAhveapT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 120 QGIPLSTGLILltwqKLAP---ISILYQISPSINLHLMITMSFLS---ILIGGWGGLNQTQLRKIMAYSSIAHMGWMT-A 192
Cdd:TIGR01972 236 AGSVILAGVLL----KMGTygfLRFNLPLFPDASLYFAPVLAALGviaIIYGALIALAQTDIKRLIAYSSISHMGFVLlG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 193 ILLYSPT------LTLLNLLIYIVMTFTMFMLLIQN-STTTTLLLSQTWNTTPVMTTFTMLTLLSMGGLPPLTGFMPKWM 265
Cdd:TIGR01972 312 IFSFNELgisgavFQMISHGLITAALFLLVGVLYERaHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 1904804565 266 IIQ 268
Cdd:TIGR01972 392 ILL 394
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-298 1.94e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.57  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  93 TASILMTMALAIKLGLSPFHFWVPEV-TQGIPLSTGLILLTWQKlAPISILYQISPSI----------NLHLMITMSFLS 161
Cdd:PRK08375  203 TAFGFVLLALALKAAVFPLHTWLPRAyPAAPPVVTALLSGLVTK-VAVYALIRIYFTVfggdfrfalgLGWLLAVLALLS 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 162 ILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIV----MTFTMFMlliqnSTTTTLLLSQTWNTT 237
Cdd:PRK08375  282 MLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalMKGALFL-----AAGAIEVTYGTRRLS 356

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1904804565 238 P----------VMTTFTMLtLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAY 298
Cdd:PRK08375  357 ElsglgrrmplTAAAFAVA-SLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 43-299 2.53e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 52.28  E-value: 2.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  43 IMMKKPNPRATEASTKYFLTQATASSLLMLAIII----------------NLMHSSQWTIMKLFDPTASILMTMALA--- 103
Cdd:PRK12667  153 VAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmadlsakIRGLSFPLTGGLAGNPPLALGVALALAlwa 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 104 --IKLGLSPFHFWVPEVTQGIPLSTGLIL----LTWQKLAPISILYQI---------SPSINLHLMITMSFLSILIGGWG 168
Cdd:PRK12667  233 ftIKAAIFPNHFWLPDAHPAAPSPVSAMLsglvVNVGAYAIIRFLYTIfgispslidFRAALSPILIILGAVSAIIGALM 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 169 GLNQTQLRKIMAYSSIAHMGWMTAILLYSPTLTLLNLLIYIVM-TFTMFMLLIQNSTTTTLLLSQ-------TWNTTPVM 240
Cdd:PRK12667  313 MVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINhAIAKSLLFLASGVFIHAAGTRdidelagLGRKMPIA 392

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1904804565 241 TTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYS 299
Cdd:PRK12667  393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-326 6.36e-06

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 47.61  E-value: 6.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 100 MALAIKLGLSPFHFWVPEVTQGIPLSTGL----ILLTWQKLAPISILYQISPSINLHL---MITMSFLSILIGGWGGLNQ 172
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVllagILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATCRQ 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 173 TQLRKIMAYSSIAHMGWMTAILLYSPTLTLLN----LLIYIVMTFTMFMLLI----QNSTTTTLLLSQTWNTTPVMTTFT 244
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGsifiMLAHGIVSSLLFILVTilydRHHTRLIKYYRGLSITMPIWGTIM 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 245 MLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLI---LPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKwQFYHTK 321
Cdd:MTH00226  398 IVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIgvfVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRR-EFYITA 476


                  ....*
gi 1904804565 322 QMTLL 326
Cdd:MTH00226  477 SMVFF 481
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-296 9.31e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 47.25  E-value: 9.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  92 PTASILMTMALAIKLGLSPFhFWVPEVTQGIPLSTGLI---LLT----WQKLAPISILYQISPSINLHLMITMSFLSILI 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALfaaLLTkvgiYALIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTAiLLYSPTLTLLNLLIY------IVMTFTMFMLLI---QNSTTTTLLLSQTWN 235
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILL-GLALGTPAGINGAIFylvhdmVVKTALFLIAGSlvrLTGYRSLQYLGGLYR 364

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1904804565 236 TTPVMTTFTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRL 296
Cdd:PRK12663  365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 49-300 9.91e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.07  E-value: 9.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  49 NPRATEASTKYFLTQATASSLLMLAIIINLMHSSQWTIMKLF-------DPTASILMTMALAI----KLGLSPFHFWVPE 117
Cdd:COG1009   157 KPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLaaaptilSSPLLTLILLLLLLgafgKSAQFPLHFWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 118 -----------------VTQGIPLstglilltwqkLAPISILYQISPSInLHLMITMSFLSILIGGWGGLNQTQLRKIMA 180
Cdd:COG1009   237 amegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLA 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 181 YSSIAHMGWMTAIL-LYSPTLTLLNLLIYIVMTFTMFM----LLIQNSTTTTLLLSQTWNTTPVMTTFTMLTLLSMGGLP 255
Cdd:COG1009   305 YSTVSQLGYMFLALgVGAYVAALFHLLTHAFFKALLFLgagsVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIP 384

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1904804565 256 PLTGFMPKWMIIQELTKNDTL--ILPTLMAITALLNLYFYMRLAYST 300
Cdd:COG1009   385 PFAGFFSKEAILEAALEAGGLgpLLLAVALLGAFLTAFYSFRLFFLV 431
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-191 1.72e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.35  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  55 ASTKYFL-TQAtaSSLLMLAIIINL-------MHSSQW-TIMKL-FDPTASILMTMAL----AIKLGLSPFHFWVPEV-- 118
Cdd:PRK05846  162 AATKFFLyTLL--GSLLMLVAIIYLvvvyynaTGTFDIaDLLNLpLPPGVQYWLFLAFfiafAVKMPMFPLHTWLPDAhv 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 119 ---TQGIPLSTGLILltwqKLAP---ISILYQISPSIN---LHLMITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGW 189
Cdd:PRK05846  240 qapTAGSVLLAGILL----KMGAyglLRFSLPLFPDAShefAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                  ..
gi 1904804565 190 MT 191
Cdd:PRK05846  316 VT 317
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-211 6.63e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 44.66  E-value: 6.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 100 MALAIKLGLSPFHFWVPE-----------VTQGIPLSTG---LILLTWqKLAPISILYqISPsinlhLMITMSFLSILIG 165
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgygFIRFSW-PLLPEASEY-FSP-----LIQTLSLLAIIYG 286

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1904804565 166 GWGGLNQTQLRKIMAYSSIAHMGWMTaILLYSPTLTLLNLLIYIVM 211
Cdd:MTH00217  287 SLTTCRQVDLKRIIAYSSVAHMGLVT-LGIFSHTIQGLVAAIFLML 331
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 43-284 7.24e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 7.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  43 IMMKKPNPRATEASTKYFLTQATASSLLMLAI--------------IINLMHSSQWTIMKLFdptASILMTMALAIKLGL 108
Cdd:PRK08668  136 MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIfliyaktgtfdfadISQGLINDTSTGFALI---VFLFLLAFGVAKAGI 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 109 SPFHFWVPEVTQGIP------LSTGLI------------LLTWQKLAPISILYQISPSINlHLMITMSFLSILIGGWGGL 170
Cdd:PRK08668  213 FPLHVWAPDAYSEAPqsfsavLSGQLSklgaygfllvlyVLPGTKLFSEFGTYRGVPLFN-YILAWLGNISIIVGTLMAI 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 171 NQTQLRKIMAYSSIAHMGW-------MTAILLYSPTLTLLNLLIYIVMTFTMFMLLI-QNSTTTTLLLSQTWNTTPVMTT 242
Cdd:PRK08668  292 LQEDIKKLIAYSSVANGGYilvglglGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIyRTGTTKISEMGGLIEKMPFTFA 371

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1904804565 243 FTMLTLLSMGGLPPLTGFMPKWMIIQELTKNDTLILPTLMAI 284
Cdd:PRK08668  372 MYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 96-317 4.44e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 41.39  E-value: 4.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  96 ILMTMALAIKLGLSPFHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISPSINLHLMITMSFLSILIGgwggLNQTQL 175
Cdd:MTH00091   61 YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM----FLLKSY 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 176 RKIMAYSSIAHMGWMTAILLYSptltLLNLLIYIVMTFTMFMLLIQNsttttlllsqtWNTTPVMTTFTMLTLLSMGGLP 255
Cdd:MTH00091  137 KNLLILSSTESFNWLILSFFFS----FFNVFFLFFYYFLLMLFLIPK-----------FNNVNKLNFVSWETLLVFMNLP 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1904804565 256 PLTGFMPKWMIIQELTKNDTLILPTLMAITALLNLYFYMRLAYSTALTLFPSTNNMKMKWQF 317
Cdd:MTH00091  202 FSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFF 263
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 59-191 5.81e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 41.59  E-value: 5.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  59 YFLTQATASSLLMLAIIINLMHSSQWT------IMKLFDPTASILMT---MALAIKLGLSPFHFWVPEVTQGIPLSTGL- 128
Cdd:MTH00204  167 YFFFYTFAGSVFMLLGIFQLYSITGTTdyqillNIKLPLSIQKWLLVgffLSLAVKIPQIPFHIWLPQAHVEAPVAGSVi 246

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1904804565 129 ---ILLTWQKLAPISILYQISPSINLH---LMITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:MTH00204  247 lagILLKLGGYGFLRFSWPLFPAASEYfapLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVP 315
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
96-206 6.56e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.22  E-value: 6.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  96 ILMTMALAIKLGLSPFHFWVPE--VTQGIPLST-------------------GLILLTWQKLAPisilyqispsinlhLM 154
Cdd:PRK06473  209 APILVGFGIKIPLVPFHTWLPDahVEASTPVSVllagvllklgtygllrfgvGLFPEAWVYLAP--------------WL 274

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1904804565 155 ITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMGWmtaILLYSPTLTLLNLL 206
Cdd:PRK06473  275 ATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGY---ILLAAAAATPLSIL 323
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-333 8.41e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.22  E-value: 8.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 111 FHFWVPEVTQGIPLSTGLILLTWQKLAPISILYQISP-----SINLHLMITMSFLSILIGGWGGLNQTQLRKIMAYSSIA 185
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfeqaPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 186 HMGWMTAIL-LYSPTLTLLNLLIYIVmtFTMFMLLIQNSTTTTLLLSQTW-------NTTPVMTTFTMLTLLSMGGLPPL 257
Cdd:MTH00020  309 QLGYMVVACgLSHYSISLFHLMNHAF--FKALLFLSAGSVIHALSDEQDMrkmggliSFLPLTYIFFLIGSLSLMGFPYL 386

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1904804565 258 TGFMPKWMIIQELTKNDTLILPTLMAI-TALLNLYFYMRLAYstaLTLFPSTNNMKMKWQFYHTKQMTLLPTAIVLS 333
Cdd:MTH00020  387 TGFYSKDLILELAFGQYYLIFAYWLGCfSALLTAFYSIRLIY---LTFLSNTNLKKAVFFHLHEGDWNLLLPLGILA 460
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 52-188 7.47e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 38.21  E-value: 7.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565  52 ATEASTKYFLTQATASSLLMLAI--------IINLMHSSQWTIMklFDPTASI----LMTMALAIKLGLSPFHFWVPEVT 119
Cdd:PRK08377  156 AAEASMKYIVLGGIGSSFFLIGValiygatgTLNMAHIAQLAGT--IDPTVAQvglaLLIFGLAVEAELFPLNAWAPDAY 233

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1904804565 120 QGIP------LSTGLILLTWQKLAPISILYQISPSIN--LHLMITMSFLSILIGGWGGLNQTQLRKIMAYSSIAHMG 188
Cdd:PRK08377  234 QAAPhpitvmFSAFVVKAGLYAMARILYLMQNANGWSsvLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVG 310
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-263 8.95e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.98  E-value: 8.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 110 PFHFWVPEVTQG-IPLSTGLILLTWQKlAPISILYQISPSI--NLHLMITMSF---LSILIGGWGGLNQTQLRKIMAYSS 183
Cdd:PRK12647  213 PFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLggTPLWQTILPLfggLTMLTGALLAVRQTDLKLILAYST 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904804565 184 IAHMGWMTAILLYSPTLTLLNLLIYIVM----TFTMFM----LLIQNSTTTTLLLSQTWNTTPVMTTFTMLTLLSMGGLP 255
Cdd:PRK12647  292 VSALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMvagiIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLP 371


                  ....*...
gi 1904804565 256 PLTGFMPK 263
Cdd:PRK12647  372 PLFGFLAK 379
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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