|
Name |
Accession |
Description |
Interval |
E-value |
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-233 |
3.33e-109 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 313.13 E-value: 3.33e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSN 80
Cdd:COG1136 1 MSPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLID-GQDIS--SLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIAvsqGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:COG1136 78 RELARLRRRHIGFVFQFFNLLPELTALENVALPLLLA---G-----VSRKERRERARELLERVGLGDRLDHRPSQLSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:COG1136 150 QQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAARADRVIRLRDGRI 222
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-233 |
6.27e-96 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 279.37 E-value: 6.27e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSLSNGELA 84
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD---GTDISKLSEKELA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIAvsqGRSPsvishRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03255 78 AFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPK-----KERRERAEELLERVGLGDRLNHYPSELSGGQQQRV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
4-234 |
1.19e-83 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 248.42 E-value: 1.19e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGEL 83
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN-GQSLS--KLSSNER 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsqgrspSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLI--------GKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRLY 234
Cdd:TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-233 |
2.79e-83 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 247.73 E-value: 2.79e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKID-KDIdpFSLSNGE 82
Cdd:COG4181 8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTV--RLAgQDL--FALDEDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 LAVFRNRVIGFIFQ-FHyLLPEFSAIENVMMPGMIAvsqgrspsviSHRELYEKAEKLLDELALYARKNHKSGELSGGEQ 161
Cdd:COG4181 84 RARLRARHVGFVFQsFQ-LLPTLTALENVMLPLELA----------GRRDARARARALLERVGLGHRLDHYPAQLSGGEQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:COG4181 153 QRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAARCDRVLRLRAGRL 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
23-233 |
4.82e-73 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 222.00 E-value: 4.82e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDkdidPFS-LSNGELAVFRNRVIGFIFQFHYLL 101
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQ----PMSkLSSAAKAELRNQKLGFIYQFHHLL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEFSAIENVMMPGMIAvsqGRSPSvishrELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADE 181
Cdd:PRK11629 100 PDFTALENVAMPLLIG---KKKPA-----EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 182 PTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
5-233 |
1.47e-62 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 194.50 E-value: 1.47e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGELA 84
Cdd:COG2884 2 IRFENVSKRY---PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVN-GQDLS--RLKRREIP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRnRVIGFIFQFHYLLPEFSAIENVMMPgMIAvsQGRSPSVISHRelyekAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:COG2884 76 YLR-RRIGVVFQDFRLLPDRTVYENVALP-LRV--TGKSRKEIRRR-----VREVLDLVGLSDKAKALPHELSGGEQQRV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHNESLSKRC-HRTLEMVDGRL 233
Cdd:COG2884 147 AIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMpKRVLELEDGRL 215
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-233 |
7.28e-59 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 186.03 E-value: 7.28e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGEL 83
Cdd:COG3638 2 MLELRNLSKRY---PGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEIL--VD-GQDVTALRGRAL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQFHYLLPEFSAIENVMMpGMIavsqGRSP---SVIS--HRELYEKAEKLLDELALYARKNHKSGELSG 158
Cdd:COG3638 76 RRLRRR-IGMIFQQFNLVPRLSVLTNVLA-GRL----GRTStwrSLLGlfPPEDRERALEALERVGLADKAYQRADQLSG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:COG3638 150 GQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRyADRIIGLRDGRV 225
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
4-215 |
6.86e-56 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 178.74 E-value: 6.86e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGEL 83
Cdd:COG1116 7 ALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLV------------DGKP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:COG1116 75 VTGPGPDRGVVFQEPALLPWLTVLDNVALGLEL---RG-----VPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQR 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:COG1116 147 VAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHD 198
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
4-233 |
5.20e-55 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 175.85 E-value: 5.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIdpFSLSNGEL 83
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD-GTDL--TLLSGKEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQFHYLLPEFSAIENVMMPGMIAVsqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:cd03258 78 RKARRR-IGMIFQHFNLLSSRTVFENVALPLEIAG--------VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRiCDRVAVMEKGEV 219
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
4-233 |
3.03e-54 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 173.81 E-value: 3.03e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKV------LYKIDKDidpfs 77
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVslvgqpLHQMDEE----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 lsngELAVFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsQGRSpsvisHRELYEKAEKLLDELALYARKNHKSGELS 157
Cdd:PRK10584 81 ----ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALL---RGES-----SRQSRNGAKALLEQLGLGKRLDHLPAQLS 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-233 |
8.35e-54 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 183.00 E-value: 8.35e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFymPAGE--LKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKvlYKI-DKDIDpfS 77
Cdd:PRK10535 1 MTALLELKDIRRSY--PSGEeqVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT--YRVaGQDVA--T 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 LSNGELAVFRNRVIGFIFQFHYLLPEFSAIENVMMPgmiAVSQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELS 157
Cdd:PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVP---AVYAG-----LERKQRLLRAQELLQRLGLEDRVEYQPSQLS 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK10535 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-232 |
1.11e-53 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 172.75 E-value: 1.11e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFymPAGElKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSLSNGELA 84
Cdd:cd03256 1 IEVENLSKTY--PNGK-KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID---GTDINKLKGKALR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03256 75 QLRRQ-IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGR 232
Cdd:cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREyADRIVGLKDGR 222
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
5-233 |
4.76e-52 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 171.41 E-value: 4.76e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID-KDIDpfSLSNGEL 83
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVL--VDgVDLT--ALSEREL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQfHY-LLPEFSAIENVMMPGMIAvsqGRSPSVIShrelyEKAEKLLDELALYARKNHKSGELSGGEQQ 162
Cdd:COG1135 78 RAARRK-IGMIFQ-HFnLLSSRTVAENVALPLEIA---GVPKAEIR-----KRVAELLELVGLSDKADAYPSQLSGGQKQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:COG1135 148 RVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRiCDRVAVLENGRI 219
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
5-215 |
9.93e-51 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 164.57 E-value: 9.93e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGELA 84
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV------------DGEPV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03293 69 TGPGPDRGYVFQQDALLPWLTVLDNVALGLEL---QG-----VPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
7-228 |
1.06e-49 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 161.24 E-value: 1.06e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 7 VEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSngELAVF 86
Cdd:TIGR03608 1 LKNISKKF----GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN-GQETPPLNSK--KASKF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 87 RNRVIGFIFQfHYLLPEFSAIENVMMPGMIAVSqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAV 166
Cdd:TIGR03608 74 RREKLGYLFQ-NFALIENETVEENLDLGLKYKK-------LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 167 ARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHNESLSKRCHRTLEM 228
Cdd:TIGR03608 146 ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHDPEVAKQADRVIEL 206
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-214 |
1.21e-49 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 162.09 E-value: 1.21e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfsLSNGEL 83
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVD-GEDLT---DSKKDI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQfHY-LLPEFSAIENVMMpGMIAVsQGRSPSvishrELYEKAEKLLDELALYARKNHKSGELSGGEQQ 162
Cdd:COG1126 73 NKLRRK-VGMVFQ-QFnLFPHLTVLENVTL-APIKV-KKMSKA-----EAEERAMELLERVGLADKADAYPAQLSGGQQQ 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLD-TKTGEELfKLLMDInQKRGITFIIVTH 214
Cdd:COG1126 144 RVAIARALAMEPKVMLFDEPTSALDpELVGEVL-DVMRDL-AKEGMTMVVVTH 194
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-233 |
3.48e-49 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 160.75 E-value: 3.48e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfsLSNGEL 83
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD-GKDLLK--LSRRLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQ--FHYLLPEFSAIENVMMPgmIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHksgELSGGEQ 161
Cdd:cd03257 78 KIRRKE-IQMVFQdpMSSLNPRMTIGEQIAEP--LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPH---ELSGGQR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKiADRVAVMYAGKI 224
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-233 |
1.67e-48 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 166.23 E-value: 1.67e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYM-PAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGE 82
Cdd:COG1123 260 LLEVRNLSKRYPVrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFD-GKDLT--KLSRRS 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 LAVFRnRVIGFIFQ--FHYLLPEFSAIENVMMPGMIAvsqgrspSVISHRELYEKAEKLLDELALYARKNHKS-GELSGG 159
Cdd:COG1123 337 LRELR-RRVQMVFQdpYSSLNPRMTVGDIIAEPLRLH-------GLLSRAERRERVAELLERVGLPPDLADRYpHELSGG 408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:COG1123 409 QRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYiADRVAVMYDGRI 483
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-233 |
2.05e-47 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 159.58 E-value: 2.05e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGELA 84
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL--VD-GQDLTALSEKELR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRnRVIGFIFQFHYLLPEFSAIENVMMPGMIAvsqGRSPSVIShrelyEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:PRK11153 79 KAR-RQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIK-----ARVTELLELVGLSDKADRYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRiCDRVAVIDAGRL 219
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
4-233 |
3.41e-47 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 156.30 E-value: 3.41e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFymPAGElKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGEL 83
Cdd:TIGR02315 1 MLEVENLSKVY--PNGK-QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLE-GTDIT--KLRGKKL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:TIGR02315 75 RKLRRR-IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKyADRIVGLKAGEI 224
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
5-214 |
4.94e-47 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 154.61 E-value: 4.94e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:cd03262 1 IEIKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII------IDGLKLTDDKKN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRV-IGFIFQFHYLLPEFSAIENVMMPGMIAvsQGRSPSvishrELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:cd03262 71 INELRQkVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKA-----EAEERALELLEKVGLADKADAYPAQLSGGQQQR 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH 214
Cdd:cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTH 193
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
5-233 |
2.43e-46 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 153.25 E-value: 2.43e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELK--VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSG--KVLYKidkdiDPFSLSN 80
Cdd:TIGR02982 2 ISIRNL--NHYYGHGSLRkqVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGslKVLGQ-----ELHGASK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRnRVIGFIFQFHYLLPEFSAIENVMMPgmIAVSQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:TIGR02982 75 KQLVQLR-RRIGYIFQAHNLLGFLTARQNVQMA--LELQPN-----LSYQEARERARAMLEAVGLGDHLNYYPHNLSGGQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:TIGR02982 147 KQRVAIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHDNRILDVADRILQMEDGKL 219
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
24-232 |
3.25e-46 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 152.79 E-value: 3.25e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKID-KDIDPfsLSNGELAVFRNRvIGFIFQFHYLLP 102
Cdd:TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV--RIAgEDVNR--LRGRQLPLLRRR-IGVVFQDFRLLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 EFSAIENVMMPgMIAvsQGRSPSVISHRelyekAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEP 182
Cdd:TIGR02673 93 DRTVYENVALP-LEV--RGKKEREIQRR-----VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 183 TGNLDTKTGEELFKLLMDINQkRGITFIIVTHNESLSKRC-HRTLEMVDGR 232
Cdd:TIGR02673 165 TGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVaHRVIILDDGR 214
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
5-233 |
1.24e-45 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 151.12 E-value: 1.24e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLsngelA 84
Cdd:COG4619 1 LELEGLSFRV----GGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLD-GKPLSAMPP-----P 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRViGFIFQfhyllpefsaiENVMMPGMIAvSQGRSPSVISHREL-YEKAEKLLDELALYARKNHKS-GELSGGEQQ 162
Cdd:COG4619 71 EWRRQV-AYVPQ-----------EPALWGGTVR-DNLPFPFQLRERKFdRERALELLERLGLPPDILDKPvERLSGGERQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:COG4619 138 RLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERvADRVLTLEAGRL 209
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-214 |
1.46e-45 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 151.67 E-value: 1.46e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSN 80
Cdd:COG1127 2 SEPMIEVRNLTKSF----GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVD-GQDIT--GLSE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRNRvIGFIFQFHYLLPEFSAIENVMMPgMIAVSQgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:COG1127 75 KELYELRRR-IGMLFQGGALFDSLTVFENVAFP-LREHTD------LSEAEIRELVLEKLELVGLPGAADKMPSELSGGM 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG1127 147 RKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTH 200
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-233 |
3.93e-45 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 150.73 E-value: 3.93e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSLSNGELA 84
Cdd:cd03261 1 IELRGLTKSF----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID---GEDISGLSEAELY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLLPEFSAIENVMMPGmiavsqgRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03261 74 RLRRR-MGMLFQSGALFDSLTVFENVAFPL-------REHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAiADRIAVLYDGKI 215
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
5-232 |
1.74e-44 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 146.95 E-value: 1.74e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslSNGELA 84
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID-GEDLTD---LEDELP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRnRVIGFIFQFHYLLPEFSAIENVMMPgmiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQRV 164
Cdd:cd03229 73 PLR-RRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRV 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGR 232
Cdd:cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDlDEAARLADRVVVLRDGK 178
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-233 |
1.22e-43 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 147.26 E-value: 1.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGEL 83
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVT------FDGRPVTRRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRnRVIGFIFQ-----FHyllPEFSAIENVMMPGMIavsQGRSPSVishrelyEKAEKLLDELALYA----RKNHksg 154
Cdd:COG1124 75 KAFR-RRVQMVFQdpyasLH---PRHTVDRILAEPLRI---HGLPDRE-------ERIAELLEQVGLPPsfldRYPH--- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 155 ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESL-SKRCHRTLEMVDGRL 233
Cdd:COG1124 138 QLSGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVvAHLCDRVAVMQNGRI 217
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
13-232 |
5.47e-43 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 144.15 E-value: 5.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgelavfRNRVIG 92
Cdd:cd03225 6 SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD-GKDLTKLSLKE------LRRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFhyllPE-------------FSAiENVMMPgmiavsqgrspsvisHRELYEKAEKLLDELALYARKNHKSGELSGG 159
Cdd:cd03225 79 LVFQN----PDdqffgptveeevaFGL-ENLGLP---------------EEEIEERVEEALELVGLEGLRDRSPFTLSGG 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKR-CHRTLEMVDGR 232
Cdd:cd03225 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLElADRVIVLEDGK 211
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-234 |
1.40e-42 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 144.42 E-value: 1.40e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGEL 83
Cdd:COG1120 1 MLEAENLSVGY----GGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLD-GRDLA--SLSRREL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AvfrnRVIGFIFQFHYLLPEFSAIENVMMpgmiavsqGRSPsvisHR--------ELYEKAEKLLDELALYARKNHKSGE 155
Cdd:COG1120 74 A----RRIAYVPQEPPAPFGLTVRELVAL--------GRYP----HLglfgrpsaEDREAVEEALERTGLEHLADRPVDE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRLY 234
Cdd:COG1120 138 LSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARyADRLVLLKDGRIV 217
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-233 |
2.07e-42 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 143.69 E-value: 2.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGEL 83
Cdd:PRK09493 1 MIEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI------VDGLKVNDPKV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVfrnRVI----GFIFQFHYLLPEFSAIENVMMpGMIAVSQgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGG 159
Cdd:PRK09493 71 DE---RLIrqeaGMVFQQFYLFPHLTALENVMF-GPLRVRG------ASKEEAEKQARELLAKVGLAERAHHYPSELSGG 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKRCHRTLEMVD-GRL 233
Cdd:PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDkGRI 214
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
5-233 |
2.30e-42 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 142.66 E-value: 2.30e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIdpfslsnGELA 84
Cdd:cd03259 1 LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID-GRDV-------TGVP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRnRVIGFIFQFHYLLPEFSAIENVMMPGMIAVsqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03259 69 PER-RNIGMVFQDYALFPHLTVAENIAFGLKLRG--------VPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH--NESLSkRCHRTLEMVDGRL 233
Cdd:cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHdqEEALA-LADRIAVMNEGRI 209
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
22-233 |
3.11e-42 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 142.55 E-value: 3.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSLSNGELAVFRnRVIGFIFQFHYLL 101
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN---GQDVSDLRGRAIPYLR-RKIGVVFQDFRLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEFSAIENVMMPgmIAVSQgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADE 181
Cdd:cd03292 91 PDRNVYENVAFA--LEVTG------VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 182 PTGNLDTKTGEELFKLLMDINqKRGITFIIVTHNESLSKRC-HRTLEMVDGRL 233
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAKELVDTTrHRVIALERGKL 214
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
5-233 |
4.93e-42 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 142.47 E-value: 4.93e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgela 84
Cdd:COG1122 1 IELENL--SFSYP-GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVD-GKDITKKNLRE---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vFRNRViGFIFQFhyllPE---FSAI--ENVMMpGMIAvsQGRSPSvishrELYEKAEKLLDELALYARKNHKSGELSGG 159
Cdd:COG1122 73 -LRRKV-GLVFQN----PDdqlFAPTveEDVAF-GPEN--LGLPRE-----EIRERVEEALELVGLEHLADRPPHELSGG 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:COG1122 139 QKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNK-EGKTVIIVTHDlDLVAELADRVIVLDDGRI 212
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-215 |
1.19e-41 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 144.04 E-value: 1.19e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDKP--TSGKVLYKiDKDIdpFSLSN 80
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAIlGLLPPPgiTSGEILFD-GEDL--LKLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRNRVIGFIFQ--FHYLLPEFSAIENVMMPgmIAVSQGrspsvISHRELYEKAEKLLDELALYARKNHKS---GE 155
Cdd:COG0444 78 KELRKIRGREIQMIFQdpMTSLNPVMTVGDQIAEP--LRIHGG-----LSKAEARERAIELLERVGLPDPERRLDrypHE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:COG0444 151 LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHD 210
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-233 |
2.29e-41 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 140.97 E-value: 2.29e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:COG1131 1 IEVRGLTKRY----GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVR------VLGEDVARDPAE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNrvIGFIFQFHYLLPEFSAIENVMMpgmIAVSQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:COG1131 71 VRRR--IGYVPQEPALYPDLTVRENLRF---FARLYG-----LPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRL 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:COG1131 141 GLALALLHDPELLILDEPTSGLDPEARRELWELLRELA-AEGKTVLLSTHYlEEAERLCDRVAIIDKGRI 209
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-214 |
5.31e-41 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 142.93 E-value: 5.31e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfslsn 80
Cdd:COG3842 2 AMPALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLD-GRDVT------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gELAVFRnRVIGFIFQfHYLL-PEFSAIENVM----MPGMiavsqgrspsviSHRELYEKAEKLLDELALYARKNHKSGE 155
Cdd:COG3842 71 -GLPPEK-RNVGMVFQ-DYALfPHLTVAENVAfglrMRGV------------PKAEIRARVAELLELVGLEGLADRYPHQ 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG3842 136 LSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTH 194
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-234 |
1.65e-40 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 139.07 E-value: 1.65e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVLYkidkdidpfsls 79
Cdd:COG1121 3 MMPAIELENLTVSY----GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAIlGLL-PPTSGTVRL------------ 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 80 NGELAVFRNRVIGFIFQFHYLLPEF--SAIENVMMpgmiavsqGRSPSV----ISHRELYEKAEKLLDELALYARKNHKS 153
Cdd:COG1121 66 FGKPPRRARRRIGYVPQRAEVDWDFpiTVRDVVLM--------GRYGRRglfrRPSRADREAVDEALERVGLEDLADRPI 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHN-ESLSKRCHRTLEMVDGR 232
Cdd:COG1121 138 GELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRR-EGKTILVVTHDlGAVREYFDRVLLLNRGL 216
|
..
gi 1901209871 233 LY 234
Cdd:COG1121 217 VA 218
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
5-233 |
2.71e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 137.95 E-value: 2.71e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGELA 84
Cdd:cd03219 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD-GEDIT--GLPPHEIA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrNRVIGFIFQFHYLLPEFSAIENVMMPGMIA--VSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQ 162
Cdd:cd03219 74 ---RLGIGRTFQIPRLFPELTVLENVMVAAQARtgSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDmDVVMSLADRVTVLDQGRV 221
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
4-234 |
1.38e-39 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 136.16 E-value: 1.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYmpaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGEL 83
Cdd:PRK10908 1 MIRFEHVSKAYL---GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS-GHDIT--RLKNREV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRnRVIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRspsvishrELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:PRK10908 75 PFLR-RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGD--------DIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHNESL-SKRCHRTLEMVDGRLY 234
Cdd:PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN-RVGVTVLMATHDIGLiSRRSYRMLTLSDGHLH 216
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-215 |
1.43e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 136.71 E-value: 1.43e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsn 80
Cdd:COG0411 1 SDPLLEVRGLTKRF----GGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFD-GRDITG----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 geLAVFRnRV---IGFIFQFHYLLPEFSAIENVMMP-------GMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKN 150
Cdd:COG0411 71 --LPPHR-IArlgIARTFQNPRLFPELTVLENVLVAaharlgrGLLAALLRLPRARREEREARERAEELLERVGLADRAD 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 151 HKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:COG0411 148 EPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHD 212
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
5-217 |
1.01e-38 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 133.90 E-value: 1.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsngeLA 84
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD-GKDITN-------LP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRnRVIGFIFQFHYLLPEFSAIENVMMPGMIAvsqGRSPSVIShrelyEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03300 69 PHK-RPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIK-----ERVAEALDLVQLEGYANRKPSQLSGGQQQRV 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
5-233 |
1.05e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 133.85 E-value: 1.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTL-----DKPTSGKVLYKiDKDIdpFSLS 79
Cdd:cd03260 1 IELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLD-GKDI--YDLD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 80 NGELAVfRNRViGFIFQFHYLLPeFSAIENVMMPGMIavsQGRSPsvisHRELYEKAEKLLDELAL--YARKNHKSGELS 157
Cdd:cd03260 74 VDVLEL-RRRV-GMVFQKPNPFP-GSIYDNVAYGLRL---HGIKL----KEELDERVEEALRKAALwdEVKDRLHALGLS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLD---TKTGEELFKLLmdinqKRGITFIIVTHNESLSKRC-HRTLEMVDGRL 233
Cdd:cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDpisTAKIEELIAEL-----KKEYTIVIVTHNMQQAARVaDRTAFLLNGRL 218
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
5-214 |
1.05e-38 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 134.54 E-value: 1.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVL-------YKIDKDIDPFS 77
Cdd:COG4598 9 LEVRDLHKSF----GDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRvggeeirLKPDRDGELVP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 LSNGELAVFRNRvIGFIFQFHYLLPEFSAIENVMMpGMIAVsQGRSPsvishRELYEKAEKLLDELALYARKNHKSGELS 157
Cdd:COG4598 85 ADRRQLQRIRTR-LGMVFQSFNLWSHMTVLENVIE-APVHV-LGRPK-----AEAIERAEALLAKVGLADKRDAYPAHLS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH 214
Cdd:COG4598 157 GGQQQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTH 212
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
27-233 |
3.46e-38 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 132.03 E-value: 3.46e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 27 IDAVFNEaEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDIDPFSLSNGELAVF---RNRVIGFIFQFHYLLPE 103
Cdd:cd03297 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI------VLNGTVLFDSRKKINlppQQRKIGLVFQQYALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 104 FSAIENVMMpGMiavsqgrspSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPT 183
Cdd:cd03297 90 LNVRENLAF-GL---------KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 184 GNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:cd03297 160 SALDRALRLQLLPELKQIKKNLNIPVIFVTHDlSEAEYLADRIVVMEDGRL 210
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-233 |
9.90e-38 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 137.34 E-value: 9.90e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFymPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLH-VIGTLDKP--TSGKVLYKiDKDIDPFS 77
Cdd:COG1123 1 MTPLLEVRDLSVRY--PGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALaLMGLLPHGgrISGEVLLD-GRDLLELS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 LSngelavFRNRVIGFIFQ--FHYLLPefSAIENVMMPGMIAvsqgrspSVISHRELYEKAEKLLDELALYARKNHKSGE 155
Cdd:COG1123 78 EA------LRGRRIGMVFQdpMTQLNP--VTVGDQIAEALEN-------LGLSRAEARARVLELLEAVGLERRLDRYPHQ 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:COG1123 143 LSGGQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDlGVVAEIADRVVVMDDGRI 221
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
5-215 |
1.20e-37 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 134.12 E-value: 1.20e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGELA 84
Cdd:COG1118 3 IEVRNISKRF----GSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVL------------NGRDL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VF----RNRVIGFIFQfHYLL-PEFSAIENvmmpgmIAV---SQGRSPSVIShrelyEKAEKLLDELALYARKNHKSGEL 156
Cdd:COG1118 67 FTnlppRERRVGFVFQ-HYALfPHMTVAEN------IAFglrVRPPSKAEIR-----ARVEELLELVQLEGLADRYPSQL 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:COG1118 135 SGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHD 193
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
23-234 |
1.75e-37 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 130.35 E-value: 1.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGELAVFRNRVIGFIFQFHYLLP 102
Cdd:cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV------------FGKPLEKERKRIGYVPQRRSIDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 EF--SAIENVMMPGMIAVSQGRSPSvishRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:cd03235 82 DFpiSVRDVVLMGLYGHKGLFRRLS----KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHN-ESLSKRCHRTLeMVDGRLY 234
Cdd:cd03235 158 EPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDlGLVLEYFDRVL-LLNRTVV 210
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
5-220 |
3.45e-37 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 130.64 E-value: 3.45e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYmpaGElKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVL---YKIDKDIdPFSLSNG 81
Cdd:PRK11264 4 IEVKNLVKKFH---GQ-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRvgdITIDTAR-SLSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 ELAVFRNRViGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVishrelyEKAEKLLDELALYARKNHKSGELSGGEQ 161
Cdd:PRK11264 79 LIRQLRQHV-GFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-------ARARELLAKVGLAGKETSYPRRLSGGQQ 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTK-TGEELFKLLMDINQKRgiTFIIVTHNESLSK 220
Cdd:PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPElVGEVLNTIRQLAQEKR--TMVIVTHEMSFAR 208
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
5-217 |
5.74e-37 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 129.77 E-value: 5.74e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLsngela 84
Cdd:cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG-GEDATDVPV------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfRNRVIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVishrELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03296 72 --QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA----EIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRV 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
5-214 |
1.75e-36 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 131.35 E-value: 1.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID-KDIdpfslsNGEL 83
Cdd:COG3839 4 LELENVSKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEIL--IGgRDV------TDLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNrvIGFIFQFHYLLPEFSAIENVMMPGMIAvsqGRSPSVIsHRELYEKAEKL-LDELAlyarkNHKSGELSGGEQQ 162
Cdd:COG3839 72 PKDRN--IAMVFQSYALYPHMTVYENIAFPLKLR---KVPKAEI-DRRVREAAELLgLEDLL-----DRKPKQLSGGQRQ 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG3839 141 RVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTH 192
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-233 |
2.38e-36 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 125.97 E-value: 2.38e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpFSLSNGELA 84
Cdd:cd03230 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV--------LGKDIKKEP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRVIGFIFQFHYLLPEFSAIENVmmpgmiavsqgrspsvishrelyekaeklldelalyarknhksgELSGGEQQRV 164
Cdd:cd03230 69 EEVKRRIGYLPEEPSLYENLTVRENL--------------------------------------------KLSGGMKQRL 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-KEGKTILLSSHIlEEAERLCDRVAILNNGRI 173
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
5-232 |
9.60e-36 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 124.42 E-value: 9.60e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:cd03228 1 IEFKNV--SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL------IDGVDLRDLDLE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLlpeFSA--IENVmmpgmiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQ 162
Cdd:cd03228 73 SLRKN-IAYVPQDPFL---FSGtiRENI---------------------------------------------LSGGQRQ 103
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGR 232
Cdd:cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGK--TVIVIAHRLSTIRDADRIIVLDDGR 171
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-232 |
5.61e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 121.97 E-value: 5.61e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 6 KVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAV 85
Cdd:cd00267 1 EIENLSFRY----GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL------IDGKDIAKLPLEE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 86 FRNRvIGFIFQfhyllpefsaienvmmpgmiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQRVA 165
Cdd:cd00267 71 LRRR-IGYVPQ-----------------------------------------------------------LSGGQRQRVA 90
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 166 VARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKR-CHRTLEMVDGR 232
Cdd:cd00267 91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELaADRVIVLKDGK 157
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
5-233 |
2.43e-34 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 123.72 E-value: 2.43e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSF-YMPAG--ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNG 81
Cdd:TIGR04521 1 IKLKNV--SYiYQPGTpfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVT--ID-GRDITAKKKK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 ELAVFRNRViGFIFQF-HYLLPEFSAIENVMM-PGMIAVSQGrspsvishrELYEKAEKLLDELALYARKNHKSG-ELSG 158
Cdd:TIGR04521 76 KLKDLRKKV-GLVFQFpEHQLFEETVYKDIAFgPKNLGLSEE---------EAEERVKEALELVGLDEEYLERSPfELSG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:TIGR04521 146 GQMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSmEDVAEYADRVIVMHKGKI 221
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-232 |
9.50e-34 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 121.00 E-value: 9.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYM---PAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVLYKIDKD-IDP 75
Cdd:COG4778 1 MTTLLEVENLSKTFTLhlqGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIyGNY-LPDSGSILVRHDGGwVDL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 76 FSLSNGELAVFRNRVIGFIFQFHYLLPEFSAIENVMMPgmiAVSQGrspsvISHRELYEKAEKLLDELALYARKNHKS-G 154
Cdd:COG4778 80 AQASPREILALRRRTIGYVSQFLRVIPRVSALDVVAEP---LLERG-----VDREEARARARELLARLNLPERLWDLPpA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 155 ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNESLSKR-CHRTLEMVDGR 232
Cdd:COG4778 152 TFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDEEVREAvADRVVDVTPFS 229
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
5-233 |
1.03e-33 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 121.98 E-value: 1.03e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSF-YMPAGELKVLKGID-------------AVFN------EAEVVGIVGASGVGKSTFLHVIGTLDKPTSGK 64
Cdd:cd03294 1 IKIKGLYKIFgKNPQKAFKLLAKGKskeeilkktgqtvGVNDvsldvrEGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 65 VLykID-KDIDpfSLSNGELAVFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsQGrspsvISHRELYEKAEKLLDEL 143
Cdd:cd03294 81 VL--IDgQDIA--AMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV---QG-----VPRAEREERAAEALELV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 144 ALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH--NESLsKR 221
Cdd:cd03294 149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHdlDEAL-RL 227
|
250
....*....|..
gi 1901209871 222 CHRTLEMVDGRL 233
Cdd:cd03294 228 GDRIAIMKDGRL 239
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
5-234 |
6.52e-33 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 118.98 E-value: 6.52e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKvLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgela 84
Cdd:cd03299 1 LKVENLSKDW----KEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN-GKDITNLPPEK---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrnRVIGFIFQFHYLLPEFSAIENVMMpGMIAVsqgRSPSVISHRELYEKAEKL-LDELAlyarkNHKSGELSGGEQQR 163
Cdd:cd03299 71 ----RDISYVPQNYALFPHMTVYKNIAY-GLKKR---KVDKKEIERKVLEIAEMLgIDHLL-----NRKPETLSGGEQQR 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRLY 234
Cdd:cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDfEEAWALADKVAIMLNGKLI 209
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
24-183 |
8.41e-33 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 116.21 E-value: 8.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIGFIFQFHYLLPE 103
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTIL------LDGQDLTDDERKSLR-KEIGYVFQDPQLFPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 104 FSAIENVMmpgmiavsQGRSPSVISHRELYEKAEKLLDELALYARKNHK----SGELSGGEQQRVAVARALLLEPNVVLA 179
Cdd:pfam00005 74 LTVRENLR--------LGLLLKGLSKREKDARAEEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLL 145
|
....
gi 1901209871 180 DEPT 183
Cdd:pfam00005 146 DEPT 149
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
1-219 |
1.63e-32 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 120.91 E-value: 1.63e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlYKIDKDIDpfSLSN 80
Cdd:TIGR03265 1 SSPYLSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDIT--RLPP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GElavfrnRVIGFIFQFHYLLPEFSAIENVmmpgmiavSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:TIGR03265 74 QK------RDYGIVFQSYALFPNLTVADNI--------AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQ 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN--ESLS 219
Cdd:TIGR03265 140 QQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDqeEALS 200
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
5-232 |
3.57e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 116.76 E-value: 3.57e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEkSFYmpaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsngeLA 84
Cdd:cd03224 1 LEVENLN-AGY---GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD-GRDITG-------LP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRnRV---IGFIFQFHYLLPEFSAIENVMMpGMIAVSQGRSPSVIshrelyekaEKLLDEL-ALYARKNHKSGELSGGE 160
Cdd:cd03224 69 PHE-RAragIGYVPEGRRIFPELTVEENLLL-GAYARRRAKRKARL---------ERVYELFpRLKERRKQLAGTLSGGE 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHNESLSKR-CHRTLEMVDGR 232
Cdd:cd03224 138 QQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEiADRAYVLERGR 209
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
4-233 |
4.56e-32 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 117.01 E-value: 4.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDK-----PTSGKVLYK----IDKDID 74
Cdd:TIGR00972 1 AIEIENLNLFY----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDlvpgvRIEGKVLFDgqdiYDKKID 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 75 PFSLsngelavfRNRvIGFIFQFHYLLPeFSAIENVMMpGMiavsqgRSPSVISHRELYEKAEKLLDELALYAR---KNH 151
Cdd:TIGR00972 77 VVEL--------RRR-VGMVFQKPNPFP-MSIYDNIAY-GP------RLHGIKDKKELDEIVEESLKKAALWDEvkdRLH 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 152 KSG-ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrgITFIIVTHNESLSKRC-HRTLEMV 229
Cdd:TIGR00972 140 DSAlGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK--YTIVIVTHNMQQAARIsDRTAFFY 217
|
....
gi 1901209871 230 DGRL 233
Cdd:TIGR00972 218 DGEL 221
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
19-234 |
6.80e-32 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 114.84 E-value: 6.80e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGELAvfrnRVIGFIFQfh 98
Cdd:cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD-GKDLA--SLSPKELA----RKIAYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 yllpefsAIENVmmpgmiavsqgrspsvishrELYEKAEKLLDELalyarknhksgelSGGEQQRVAVARALLLEPNVVL 178
Cdd:cd03214 81 -------ALELL--------------------GLAHLADRPFNEL-------------SGGERQRVLLARALAQEPPILL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 179 ADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRLY 234
Cdd:cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARyADRVILLKDGRIV 177
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
28-233 |
7.07e-32 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 115.67 E-value: 7.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 28 DAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAvfrNRVIGFIFQFHYLLPEFSAI 107
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL------INGVDVTAAPPA---DRPVSMLFQENNLFAHLTVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 108 ENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLD 187
Cdd:cd03298 89 QNVGL--------GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1901209871 188 TKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVD-GRL 233
Cdd:cd03298 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDnGRI 207
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
5-233 |
1.33e-31 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 115.04 E-value: 1.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID----KDIDPfslsn 80
Cdd:cd03301 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY--IGgrdvTDLPP----- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gelavfRNRVIGFIFQFHYLLPEFSAIENVMMPGMIAvsqGRSPSVISHReLYEKAEKL-LDELAlyarkNHKSGELSGG 159
Cdd:cd03301 70 ------KDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDER-VREVAELLqIEHLL-----DRKPKQLSGG 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN--ESLSkRCHRTLEMVDGRL 233
Cdd:cd03301 135 QRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDqvEAMT-MADRIAVMNDGQI 209
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
5-234 |
1.74e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 114.91 E-value: 1.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFymPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY------INGYSIRTDRKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNrvIGFIFQFHYLLPEFSAIENVMMPGMIavsQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03263 73 ARQS--LGYCPQFDALFDELTVREHLRFYARL---KG-----LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHN----ESLskrCHRTLEMVDGRLY 234
Cdd:cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSmdeaEAL---CDRIAIMSDGKLR 211
|
|
| tungstate_WtpC |
NF040840 |
tungstate ABC transporter ATP-binding protein WtpC; |
4-233 |
2.04e-31 |
|
tungstate ABC transporter ATP-binding protein WtpC;
Pssm-ID: 468779 [Multi-domain] Cd Length: 347 Bit Score: 117.87 E-value: 2.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKvLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLsngel 83
Cdd:NF040840 1 MIRIENLSKDW----KEFK-LRDISLEVKEGEYFIILGPSGAGKTVLLELIAGIWPPDSGKIYLD-GKDITNLPP----- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 avfRNRVIGFIFQFHYLLPEFSAIENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:NF040840 70 ---EKRGIAYVYQNYMLFPHKTVFENIAF--------GLKLRKVPKEEIERKVKEIMELLGISHLLHRKPRTLSGGEQQR 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN--ESLSkRCHRTLEMVDGRL 233
Cdd:NF040840 139 VALARALIIEPKLLLLDEPLSALDVQTRDELIREMKRWHREFGFTAIHVTHNfeEALS-LADRVGIMLNGRL 209
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
5-233 |
2.19e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 121.09 E-value: 2.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:COG2274 474 IELENV--SFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRIL------IDGIDLRQIDPA 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLlpeFSA--IENVMMpgmiavsqGRSPsvISHRELYEKAEK--LLDEL-ALYARKNHKSGE---- 155
Cdd:COG2274 546 SLRRQ-IGVVLQDVFL---FSGtiRENITL--------GDPD--ATDEEIIEAARLagLHDFIeALPMGYDTVVGEggsn 611
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:COG2274 612 LSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRL--LKGRTVIIIAHRLSTIRLADRIIVLDKGRI 687
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
19-214 |
2.41e-31 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 115.45 E-value: 2.41e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNGELAVF--------RNRV 90
Cdd:PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN-GQTINLVRDKDGQLKVAdknqlrllRTRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 91 IgFIFQFHYLLPEFSAIENVMMPGMIAVSqgrspsvISHRELYEKAEKLLDELALYARKNHK-SGELSGGEQQRVAVARA 169
Cdd:PRK10619 95 T-MVFQHFNLWSHMTVLENVMEAPIQVLG-------LSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIARA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1901209871 170 LLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH 214
Cdd:PRK10619 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTH 210
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
5-233 |
2.78e-31 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 115.11 E-value: 2.78e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGkVLYKIDKDIDpFS--LSNGE 82
Cdd:COG4161 3 IQLKNINCFY----GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSG-QLNIAGHQFD-FSqkPSEKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 LAVFRNRViGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSpsvishrELYEKAEKLLDELALYARKNHKSGELSGGEQQ 162
Cdd:COG4161 77 IRLLRQKV-GMVFQQYNLWPHLTVMENLIEAPCKVLGLSKE-------QAREKAMKLLARLRLTDKADRFPLHLSGGQQQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQT-GITQVIVTHEVEFARKvASQVVYMEKGRI 219
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-214 |
5.35e-31 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 119.14 E-value: 5.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLD--KPTSGKVLYKI------------- 69
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRIIYHValcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 70 --------------DKDIDPFSLSNGELAVFRNRvIGFIFQFHY-LLPEFSAIENVMMpgmiAVSQGRSPSvishRELYE 134
Cdd:TIGR03269 77 kvgepcpvcggtlePEEVDFWNLSDKLRRRIRKR-IAIMLQRTFaLYGDDTVLDNVLE----ALEEIGYEG----KEAVG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 135 KAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:TIGR03269 148 RAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
5-214 |
2.06e-30 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 114.03 E-value: 2.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDI---DPFSLsng 81
Cdd:COG1125 2 IEFENVTKRY---PDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILID-GEDIrdlDPVEL--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 elavfRnRVIGFIFQFHYLLPEFSAIENVMM-PGMIAVSQGRspsvIShrelyEKAEKLLDELAL----YA-RKNHksgE 155
Cdd:COG1125 75 -----R-RRIGYVIQQIGLFPHMTVAENIATvPRLLGWDKER----IR-----ARVDELLELVGLdpeeYRdRYPH---E 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG1125 137 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTH 195
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
5-233 |
2.68e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 117.56 E-value: 2.68e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDkPTSGKVLykIDkDIDPFSLSNGEL 83
Cdd:COG4987 334 LELEDV--SFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLlRFLD-PQSGSIT--LG-GVDLRDLDEDDL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AvfrnRVIGFIFQFHYLlpeFSA-I-ENVMMpgmiavsqGRsPSViSHRELYEKAEKL-LDEL--ALYARKNHKSGE--- 155
Cdd:COG4987 408 R----RRIAVVPQRPHL---FDTtLrENLRL--------AR-PDA-TDEELWAALERVgLGDWlaALPDGLDTWLGEggr 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 -LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:COG4987 471 rLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITHRLAGLERMDRILVLEDGRI 547
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
5-233 |
4.73e-30 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 111.64 E-value: 4.73e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKsFYmpaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDI--DPFSLSNG- 81
Cdd:PRK11124 3 IQLNGINC-FY---GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL------NIagNHFDFSKTp 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 ---ELAVFRNRViGFIFQFHYLLPEFSAIENVMMPGMIAVSqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSG 158
Cdd:PRK11124 73 sdkAIRELRRNV-GMVFQQYNLWPHLTVQQNLIEAPCRVLG-------LSKDQALARAEKLLERLRLKPYADRFPLHLSG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKtASRVVYMENGHI 219
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-214 |
5.44e-30 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 115.89 E-value: 5.44e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsN 80
Cdd:COG1129 1 AEPLLEMRGISKSF----GGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILL------------D 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRNRV------IGFIFQ-FHyLLPEFSAIENVMMpgmiavsqGRSPS---VISHRELYEKAEKLLDELALYARKN 150
Cdd:COG1129 65 GEPVRFRSPRdaqaagIAIIHQeLN-LVPNLSVAENIFL--------GREPRrggLIDWRAMRRRARELLARLGLDIDPD 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 151 HKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTH 214
Cdd:COG1129 136 TPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISH 198
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
5-233 |
6.10e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 116.40 E-value: 6.10e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGElKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:COG4988 337 IELEDV--SFSYPGGR-PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSIL------INGVDLSDLDPA 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLLPEfSAIENVMMpgmiavsqGRSpsVISHRELYEKAEK--LLDELALYARK-NHKSGE----LS 157
Cdd:COG4988 408 SWRRQ-IAWVPQNPYLFAG-TIRENLRL--------GRP--DASDEELEAALEAagLDEFVAALPDGlDTPLGEggrgLS 475
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:COG4988 476 GGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLAQADRILVLDDGRI 549
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-232 |
6.38e-30 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 110.26 E-value: 6.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYK---IDKDIDPFslsn 80
Cdd:COG4133 2 MLEAENLSCRR----GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNgepIRDAREDY---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gelavfrNRVIGFIFQFHYLLPEFSAIENVMMpgmIAVSQGRSPSVishrelyEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:COG4133 74 -------RRRLAYLGHADGLKPELTVRENLRF---WAALYGLRADR-------EAIDEALEAVGLAGLADLPVRQLSAGQ 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGItfIIVTHNESLSKRCHRTLEMVDGR 232
Cdd:COG4133 137 KRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGA--VLLTTHQPLELAAARVLDLGDFK 206
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
5-214 |
6.74e-30 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 111.24 E-value: 6.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDI---DPFSLsng 81
Cdd:cd03295 1 IEFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFID-GEDIreqDPVEL--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 elavfrNRVIGFIFQFHYLLPEFSAIENVmmpGMIAVSQGRSPSVISHR--ELYEKAEklLDELALYARKNHksgELSGG 159
Cdd:cd03295 74 ------RRKIGYVIQQIGLFPHMTVEENI---ALVPKLLKWPKEKIRERadELLALVG--LDPAEFADRYPH---ELSGG 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
27-234 |
1.18e-29 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 110.23 E-value: 1.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 27 IDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsngeLAVFRnRVIGFIFQFHYLLPEFSA 106
Cdd:COG3840 18 FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWN-GQDLTA-------LPPAE-RPVSMLFQENNLFPHLTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 107 IENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNL 186
Cdd:COG3840 89 AQNIGL--------GLRPGLKLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSAL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1901209871 187 DTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRLY 234
Cdd:COG3840 161 DPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARiADRVLLVADGRIA 209
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
24-215 |
2.43e-29 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 109.48 E-value: 2.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKDIDPFSlsngelavfrNRVIgfIFQFHYLLPE 103
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----------DRMV--VFQNYSLLPW 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 104 FSAIENvmmpgmIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPT 183
Cdd:TIGR01184 69 LTVREN------IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142
|
170 180 190
....*....|....*....|....*....|..
gi 1901209871 184 GNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
22-231 |
3.12e-29 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 108.50 E-value: 3.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIdpfslSNGElavfRNRVIGFIFQ--FHY 99
Cdd:cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN-GKPI-----KAKE----RRKSIGYVMQdvDYQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 100 LLpeFSAIENVMMPGMIAVSQGrspsvishrelYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLA 179
Cdd:cd03226 84 LF--TDSVREELLLGLKELDAG-----------NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 180 DEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHN-ESLSKRCHRTLEMVDG 231
Cdd:cd03226 151 DEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDyEFLAKVCDRVLLLANG 202
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
5-216 |
4.26e-29 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 111.71 E-value: 4.26e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLsngela 84
Cdd:PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH-GTDVSRLHA------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfRNRVIGFIFQFHYLLPEFSAIENVMMpGMIAVSQGRSPSVishRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:PRK10851 72 --RDRKVGFVFQHYALFRHMTVFDNIAF-GLTVLPRRERPNA---AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNE 216
Cdd:PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
5-233 |
4.57e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 110.56 E-value: 4.57e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMP-AGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLY-----KIDKDIDPFSL 78
Cdd:PRK13651 3 IKVKNIVKIFNKKlPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkdeKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGELAVFRNRV------------IGFIFQF-HYLLPEfSAIENVMMPGmiAVSQGrspsvISHRELYEKAEKLLDELAL 145
Cdd:PRK13651 83 VLEKLVIQKTRFkkikkikeirrrVGVVFQFaEYQLFE-QTIEKDIIFG--PVSMG-----VSKEEAKKRAAKYIELVGL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 146 ---YARKNhkSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHN-ESLSKR 221
Cdd:PRK13651 155 desYLQRS--PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDlDNVLEW 231
|
250
....*....|..
gi 1901209871 222 CHRTLEMVDGRL 233
Cdd:PRK13651 232 TKRTIFFKDGKI 243
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-234 |
8.74e-29 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 108.95 E-value: 8.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYmpagELKVLKGIDAVFNEAEVVGIVGASGVGKSTFL-HVIG--TLDKpTSGKVLYKIDKDIDpfs 77
Cdd:PRK09984 1 MQTIIRVEKLAKTFN----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLrHLSGliTGDK-SAGSHIELLGRTVQ--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 lSNGELA--VFRNRV-IGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSG 154
Cdd:PRK09984 73 -REGRLArdIRKSRAnTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 155 ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRyCERIVALRQGHV 231
|
.
gi 1901209871 234 Y 234
Cdd:PRK09984 232 F 232
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-217 |
9.01e-29 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 109.00 E-value: 9.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 7 VEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdidpfsLSNGELAVF 86
Cdd:PRK11247 15 LNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL-----------AGTAPLAEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 87 RNRvIGFIFQFHYLLPEFSAIENVmmpGMIAVSQGRspsvishrelyEKAEKLLDELALYARKNHKSGELSGGEQQRVAV 166
Cdd:PRK11247 80 RED-TRLMFQDARLLPWKKVIDNV---GLGLKGQWR-----------DAALQALAAVGLADRANEWPAALSGGQKQRVAL 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 167 ARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-214 |
1.97e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 108.03 E-value: 1.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkDIDPFSLSNGELA 84
Cdd:COG4525 4 LTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITL----DGVPVTGPGADRG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VfrnrvigfIFQFHYLLPEFSAIENVMMPGMIavsQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:COG4525 80 V--------VFQKDALLPWLNVLDNVAFGLRL---RG-----VPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRV 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG4525 144 GIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITH 193
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-233 |
3.07e-28 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 106.30 E-value: 3.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVL---YKIDKDIDPFslsng 81
Cdd:cd03265 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATvagHDVVREPREV----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 elavfrNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQ 161
Cdd:cd03265 72 ------RRRIGIVFQDLSVDDELTGWENLYIHARL---YG-----VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMR 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYmEEAEQLCDRVAIIDHGRI 210
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
4-215 |
4.06e-28 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 106.60 E-value: 4.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEkSFYmpaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsngeL 83
Cdd:COG0410 3 MLEVENLH-AGY---GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFD-GEDITG-------L 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRnRV---IGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVIshRELYEkaeklldeL--ALYARKNHKSGELSG 158
Cdd:COG0410 71 PPHR-IArlgIGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADL--ERVYE--------LfpRLKERRRQRAGTLSG 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHN 215
Cdd:COG0410 140 GEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLN-REGVTILLVEQN 195
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
13-233 |
7.78e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 105.36 E-value: 7.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYK-ID-KDIDPFSLSngelavfrnRV 90
Cdd:cd03245 9 SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDgTDiRQLDPADLR---------RN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 91 IGFIFQFHYLlpeFSAI--ENVMMpgmiavsqgRSPSViSHRELYEKAEKL-LDELAlyarKNHKSG----------ELS 157
Cdd:cd03245 80 IGYVPQDVTL---FYGTlrDNITL---------GAPLA-DDERILRAAELAgVTDFV----NKHPNGldlqigergrGLS 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMdiNQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03245 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR--QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
24-216 |
1.14e-27 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 104.49 E-value: 1.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDKP--TSGKVLYKiDKDIDpfslsngELAVFRnRVIGFIFQFHYL 100
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIaGTLSPAfsASGEVLLN-GRRLT-------ALPAEQ-RRIGILFQDDLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 LPEFSAIENVMMpGMiavsqgrsPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:COG4136 88 FPHLSVGENLAF-AL--------PPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLD 158
|
170 180 190
....*....|....*....|....*....|....*.
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNE 216
Cdd:COG4136 159 EPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDE 194
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-214 |
1.20e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 105.77 E-value: 1.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTL-----DKPTSGKVLykidkdIDPFSLS 79
Cdd:PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVY------LDGQDIF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 80 NGELAVFRNRViGFIFQFHYLLPEFSAIENVmmpgmiAVSQGRSPSVISHRELYEKAEKLLDELALYA----RKNHKSGE 155
Cdd:PRK14247 74 KMDVIELRRRV-QMVFQIPNPIPNLSIFENV------ALGLKLNRLVKSKKELQERVRWALEKAQLWDevkdRLDAPAGK 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGITFIIVTH 214
Cdd:PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVLVTH 203
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
5-214 |
1.75e-27 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 104.22 E-value: 1.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKDIDPFSLsngela 84
Cdd:cd03268 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrNRVIGFIFQFHYLLPEFSAIENVMMPGMIavsqgrspsvisHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03268 71 ---LRRIGALIEAPGFYPNLTARENLRLLARL------------LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTH 214
Cdd:cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSH 184
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
4-233 |
5.08e-27 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 105.58 E-value: 5.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELK----VLKGIDAV-F--NEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIdpF 76
Cdd:COG4608 7 LLEVRDLKKHFPVRGGLFGrtvgVVKAVDGVsFdiRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFD-GQDI--T 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 SLSNGELAVFRnRVIGFIFQFHY--LLPEFSAIENVMMPGMIavsQGrspsVISHRELYEKAEKLLDELAL----YARKN 150
Cdd:COG4608 84 GLSGRELRPLR-RRMQMVFQDPYasLNPRMTVGDIIAEPLRI---HG----LASKAERRERVAELLELVGLrpehADRYP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 151 HksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMV 229
Cdd:COG4608 156 H---EFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHiSDRVAVMY 232
|
....
gi 1901209871 230 DGRL 233
Cdd:COG4608 233 LGKI 236
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-234 |
8.52e-27 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 107.46 E-value: 8.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 7 VEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkdidpfSLSNGElavf 86
Cdd:COG0488 1 LENLSKSF----GGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV-----------SIPKGL---- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 87 rnrVIGFIFQFHYLLPEFSAIENVMM---------------------PGMIAVSQGRSPSVISHRELYE---KAEKLLDE 142
Cdd:COG0488 62 ---RIGYLPQEPPLDDDLTVLDTVLDgdaelraleaeleeleaklaePDEDLERLAELQEEFEALGGWEaeaRAEEILSG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 143 LALYARKNHKS-GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLmdinQKRGITFIIVTHN-ESLSK 220
Cdd:COG0488 139 LGFPEEDLDRPvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFL----KNYPGTVLVVSHDrYFLDR 214
|
250
....*....|....
gi 1901209871 221 RCHRTLEMVDGRLY 234
Cdd:COG0488 215 VATRILELDRGKLT 228
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
12-217 |
8.53e-27 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 105.57 E-value: 8.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 12 KSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID-KDIDPFSLsngelavfRNRV 90
Cdd:PRK11432 14 KRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF--IDgEDVTHRSI--------QQRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 91 IGFIFQFHYLLPEFSAIENVmmpGMIAVSQGRSPSVISHRelYEKAEKLLDelaLYARKNHKSGELSGGEQQRVAVARAL 170
Cdd:PRK11432 80 ICMVFQSYALFPHMSLGENV---GYGLKMLGVPKEERKQR--VKEALELVD---LAGFEDRYVDQISGGQQQRVALARAL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1901209871 171 LLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
4-233 |
1.17e-26 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 103.61 E-value: 1.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEK-----SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSL 78
Cdd:PRK10419 3 LLNVSGLSHhyahgGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWR---GEPLAKL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGELAVFRnRVIGFIFQfhyllPEFSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHK-SGELS 157
Cdd:PRK10419 80 NRAQRKAFR-RDIQMVFQ-----DSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKrPPQLS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERfCQRVMVMDNGQI 230
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-215 |
1.22e-26 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 103.19 E-value: 1.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLekSFYMpaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFL--------HVIGTLdkpTSGKVLYK---I 69
Cdd:COG1117 8 LEPKIEVRNL--NVYY--GDKQALKDINLDIPENKVTALIGPSGCGKSTLLrclnrmndLIPGAR---VEGEILLDgedI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 70 -DKDIDPFSLsngelavfRNRViGFIFQ----FhyllPeFSAIENVMMPGMIavsQGrspsVISHRELYEKAEKLLDELA 144
Cdd:COG1117 81 yDPDVDVVEL--------RRRV-GMVFQkpnpF----P-KSIYDNVAYGLRL---HG----IKSKSELDEIVEESLRKAA 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 145 LY---ARKNHKSG-ELSGGEQQRVAVARALLLEPNVVLADEPTGNLD---TKTGEELFKLLmdinqKRGITFIIVTHN 215
Cdd:COG1117 140 LWdevKDRLKKSAlGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDpisTAKIEELILEL-----KKDYTIVIVTHN 212
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
5-232 |
1.35e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 103.59 E-value: 1.35e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLeKSFYMPAG--ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSlSNGE 82
Cdd:PRK13637 3 IKIENL-THIYMEGTpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII--ID-GVDITD-KKVK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 LAVFRNRViGFIFQFhyllPEFSAIENVMMPGmIAVsqGRSPSVISHRELYEKAEKLLDELAL-YARKNHKSG-ELSGGE 160
Cdd:PRK13637 78 LSDIRKKV-GLVFQY----PEYQLFEETIEKD-IAF--GPINLGLSEEEIENRVKRAMNIVGLdYEDYKDKSPfELSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGR 232
Cdd:PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSmEDVAKLADRIIVMNKGK 222
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-232 |
6.85e-26 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 104.77 E-value: 6.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFYMPAG-------ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDkPTSGKVLYKiDKDID 74
Cdd:COG4172 273 PPLLEARDLKVWFPIKRGlfrrtvgHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFD-GQDLD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 75 pfSLSNGELAVFRNRvIGFIFQ--FHYLLPEFSaIENVMMPGMIAVSQGRSPsvishRELYEKAEKLLDELAL----YAR 148
Cdd:COG4172 351 --GLSRRALRPLRRR-MQVVFQdpFGSLSPRMT-VGQIIAEGLRVHGPGLSA-----AERRARVAEALEEVGLdpaaRHR 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 149 KNHksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN----ESLskrCHR 224
Cdd:COG4172 422 YPH---EFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDlavvRAL---AHR 495
|
....*...
gi 1901209871 225 TLEMVDGR 232
Cdd:COG4172 496 VMVMKDGK 503
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-233 |
6.98e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 104.88 E-value: 6.98e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFY-MPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKD----IDPF 76
Cdd:TIGR03269 277 EPIIKVRNVSKRYIsVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEwvdmTKPG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 SLSNGELavfrNRVIGFIFQFHYLLPEFSAIENVM------MPGMIAvsqgRSPSVISHREL---YEKAEKLLDELalya 147
Cdd:TIGR03269 357 PDGRGRA----KRYIGILHQEYDLYPHRTVLDNLTeaigleLPDELA----RMKAVITLKMVgfdEEKAEEILDKY---- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 148 rknhkSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTL 226
Cdd:TIGR03269 425 -----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDmDFVLDVCDRAA 499
|
....*..
gi 1901209871 227 EMVDGRL 233
Cdd:TIGR03269 500 LMRDGKI 506
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
4-233 |
1.49e-25 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 100.65 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEK-----SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSL 78
Cdd:TIGR02769 2 LLEVRDVTHtyrtgGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR---GQDLYQL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGELAVFRnRVIGFIFQFHYllpefSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHK-SGELS 157
Cdd:TIGR02769 79 DRKQRRAFR-RDVQLVFQDSP-----SAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKlPRQLS 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSfCQRVAVMDKGQI 229
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-215 |
1.51e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 100.86 E-value: 1.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKIDKDIDPFSLSNGELAVFRNRViGFIFQF-- 97
Cdd:PRK13634 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV--TIGERVITAGKKNKKLKPLRKKV-GIVFQFpe 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 HYLLPEFSAIENVMMPGMIAVSQgrspsvishRELYEKAEKLLDELALYARKNHKSG-ELSGGEQQRVAVARALLLEPNV 176
Cdd:PRK13634 96 HQLFEETVEKDICFGPMNFGVSE---------EDAKQKAREMIELVGLPEELLARSPfELSGGQMRRVAIAGVLAMEPEV 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 1901209871 177 VLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
39-217 |
3.82e-25 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 100.65 E-value: 3.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 39 IVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdidpfsLSNGELAVF--RNRVIGFIFQFHYLLPEFSAIENVMMPgmi 116
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM-----------LDGEDVTNVppHLRHINMVFQSYALFPHMTVEENVAFG--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 117 aVSQGRSPSvishRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFK 196
Cdd:TIGR01187 67 -LKMRKVPR----AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL 141
|
170 180
....*....|....*....|.
gi 1901209871 197 LLMDINQKRGITFIIVTHNES 217
Cdd:TIGR01187 142 ELKTIQEQLGITFVFVTHDQE 162
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
5-233 |
4.66e-25 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 98.38 E-value: 4.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgela 84
Cdd:cd03218 1 LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD-GQDITKLPMHK---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfRNRV-IGFIFQFHYLLPEFSAIENVMmpgmiAVSQGRSPSVishRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:cd03218 72 --RARLgIGYLPQEASIFRKLTVEENIL-----AVLEIRGLSK---KEREEKLEELLEEFHITHLRKSKASSLSGGERRR 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHN--ESLSKrCHRTLEMVDGRL 233
Cdd:cd03218 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNvrETLSI-TDRAYIIYEGKV 211
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-233 |
5.21e-25 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 96.34 E-value: 5.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdID--PFSLSNGE 82
Cdd:cd03216 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL------VDgkEVSFASPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 LAvfRNRVIGFIFQfhyllpefsaienvmmpgmiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQ 162
Cdd:cd03216 71 DA--RRAGIAMVYQ-----------------------------------------------------------LSVGERQ 89
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:cd03216 90 MVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRlDEVFEIADRVTVLRDGRV 160
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
1-215 |
8.19e-25 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 98.37 E-value: 8.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYMPAG-----ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKdidp 75
Cdd:COG4167 1 MSALLEVRNLSKTFKYRTGlfrrqQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHK---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 76 fsLSNGELAvFRNRVIGFIFQFhyllPEFSaienvMMPGMIAVSQGRSP----SVISHRELYEKAEK------LLDELAL 145
Cdd:COG4167 77 --LEYGDYK-YRCKHIRMIFQD----PNTS-----LNPRLNIGQILEEPlrlnTDLTAEEREERIFAtlrlvgLLPEHAN 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 146 YARKnhksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:COG4167 145 FYPH-----MLSSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQH 209
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
5-233 |
1.87e-24 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 96.96 E-value: 1.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgela 84
Cdd:TIGR04406 2 LVAENLIKSY----KKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILID-GQDITHLPMHE---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfRNRV-IGFIFQFHYLLPEFSAIENVMmpgmiAVSQGRSPsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:TIGR04406 73 --RARLgIGYLPQEASIFRKLTVEENIM-----AVLEIRKD--LDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRR 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHN--ESLSKrCHRTLEMVDGRL 233
Cdd:TIGR04406 144 VEIARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKE-RGIGVLITDHNvrETLDI-CDRAYIISDGKV 213
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
5-233 |
2.09e-24 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 96.11 E-value: 2.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFnEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGela 84
Cdd:cd03264 1 LQLENLTKRY----GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR--ID-GQDVLKQPQK--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vFRnRVIGFIFQFHYLLPEFSAIENVmmpGMIAVSQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03264 70 -LR-RRIGYLPQEFGVYPNFTVREFL---DYIAWLKG-----IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHIvEDVESLCNQVAVLNKGKL 207
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
5-233 |
3.86e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 94.59 E-value: 3.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID-KDIDPFSLSNgel 83
Cdd:cd03246 1 LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR--LDgADISQWDPNE--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 avFRnRVIGFIFQFHYLLPEfSAIENVmmpgmiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQR 163
Cdd:cd03246 74 --LG-DHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQR 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
5-228 |
3.98e-24 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 99.67 E-value: 3.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:TIGR02857 322 LEFSGVSVAY---PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA------VNGVPLADADAD 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLLPEfSAIENvmmpgmIAVSQ-GRSPSVIshRELYEKAEklLDEL--ALYARKNHKSGE----LS 157
Cdd:TIGR02857 393 SWRDQ-IAWVPQHPFLFAG-TIAEN------IRLARpDASDAEI--REALERAG--LDEFvaALPQGLDTPIGEggagLS 460
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEM 228
Cdd:TIGR02857 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALAALADRIVVL 529
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-232 |
5.04e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 98.48 E-value: 5.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLsng 81
Cdd:PRK09452 12 SPLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD-GQDITHVPA--- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 elavfRNRVIGFIFQFHYLLPEFSAIENV-----MmpgmiavsQGRSPSVISHRelYEKAEKL--LDELAlyarkNHKSG 154
Cdd:PRK09452 84 -----ENRHVNTVFQSYALFPHMTVFENVafglrM--------QKTPAAEITPR--VMEALRMvqLEEFA-----QRKPH 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 155 ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN--ESLSKRcHRTLEMVDGR 232
Cdd:PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeEALTMS-DRIVVMRDGR 222
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
5-215 |
5.13e-24 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 96.35 E-value: 5.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTF-LHVIGTLdKPTSGKVLykIDkDIDPFSLSNgeL 83
Cdd:TIGR04520 1 IEVENV--SFSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLaKLLNGLL-LPTSGKVT--VD-GLDTLDEEN--L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRViGFIFQFhyllPE--FSAI----------ENVMMPgmiavsqgrspsvisHRELYEKAEKLLDELALYARKNH 151
Cdd:TIGR04520 73 WEIRKKV-GMVFQN----PDnqFVGAtveddvafglENLGVP---------------REEMRKRVDEALKLVGMEDFRDR 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 152 KSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:TIGR04520 133 EPHLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHD 196
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
4-233 |
9.56e-24 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 94.74 E-value: 9.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGEL 83
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT------VDGFDVVKEPA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNrvIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRspsvishrELYEKAEKLLDELALYARKNHKSGELSGGEQQR 163
Cdd:cd03266 75 EARRR--LGFVSDSTGLYDRLTARENLEYFAGLYGLKGD--------ELTARLEELADRLGMEELLDRRVGGFSTGMRQK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLlmdINQKR--GITFIIVTHN----ESLskrCHRTLEMVDGRL 233
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREF---IRQLRalGKCILFSTHImqevERL---CDRVVVLHRGRV 214
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
23-216 |
1.33e-23 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 98.20 E-value: 1.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGELAvfrnRVIGFIFQFHYLlp 102
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT--LD-GVPVSSLDQDEVR----RRVSVCAQDAHL-- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 eFSA--IENVMMpgmiavsqGRsPSViSHRELYEKAEK--LLDEL-ALYARKNHKSGE----LSGGEQQRVAVARALLLE 173
Cdd:TIGR02868 421 -FDTtvRENLRL--------AR-PDA-TDEELWAALERvgLADWLrALPDGLDTVLGEggarLSGGERQRLALARALLAD 489
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1901209871 174 PNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNE 216
Cdd:TIGR02868 490 APILLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITHHL 530
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-233 |
1.51e-23 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 98.22 E-value: 1.51e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKS-TFLHVIGTLDKP---TSGKVLYKiDKDIdpF 76
Cdd:COG4172 3 SMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILRLLPDPaahPSGSILFD-GQDL--L 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 SLSNGELAVFRNRVIGFIFQ--FHYLLPEFSaIENVMMPgMIAVSQGRSPsvishRELYEKAEKLLDELAL------YAR 148
Cdd:COG4172 80 GLSERELRRIRGNRIAMIFQepMTSLNPLHT-IGKQIAE-VLRLHRGLSG-----AAARARALELLERVGIpdperrLDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 149 KNHksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLE 227
Cdd:COG4172 153 YPH---QLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRfADRVAV 229
|
....*.
gi 1901209871 228 MVDGRL 233
Cdd:COG4172 230 MRQGEI 235
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
19-233 |
1.74e-23 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 94.70 E-value: 1.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSNGELAvfrnRVIGFIFQFH 98
Cdd:PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG-DKPIS--MLSSRQLA----RRLALLPQHH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 yLLPEFSAIENVmmpgmiaVSQGRSPSViSH--------RELYEKA-EKL-LDELAlyarkNHKSGELSGGEQQRVAVAR 168
Cdd:PRK11231 86 -LTPEGITVREL-------VAYGRSPWL-SLwgrlsaedNARVNQAmEQTrINHLA-----DRRLTDLSGGQRQRAFLAM 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 169 ALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH--NESlSKRCHRTLEMVDGRL 233
Cdd:PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHdlNQA-SRYCDHLVVLANGHV 216
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
19-216 |
4.33e-23 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 95.87 E-value: 4.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKvLYKIDK---DIDPfslsngelavfRNRVIGFIF 95
Cdd:PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKrmnDVPP-----------AERGVGMVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 96 QFHYLLPEFSAIENVmmpgmiavSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPN 175
Cdd:PRK11000 82 QSYALYPHLSVAENM--------SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1901209871 176 VVLADEPTGNLD----TKTGEELFKLlmdiNQKRGITFIIVTHNE 216
Cdd:PRK11000 154 VFLLDEPLSNLDaalrVQMRIEISRL----HKRLGRTMIYVTHDQ 194
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
23-233 |
5.72e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 93.99 E-value: 5.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKST-FLHVIGTLdKPTSGKVLYKIDkdidPFSLSNGELAVFRNRViGFIFQfhyll 101
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTlFLHFNGIL-KPTSGEVLIKGE----PIKYDKKSLLEVRKTV-GIVFQ----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 pefSAIENVMMPGMIA-VSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:PRK13639 86 ---NPDDQLFAPTVEEdVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHNESL-SKRCHRTLEMVDGRL 233
Cdd:PRK13639 163 EPTSGLDPMGASQIMKLLYDLN-KEGITIIISTHDVDLvPVYADKVYVMSDGKI 215
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
3-233 |
1.41e-22 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 95.49 E-value: 1.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 3 ELIKVEG---LEKSFYMPAGELK-VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDIDPFSL 78
Cdd:TIGR01842 309 PLPEPEGhlsVENVTIVPPGGKKpTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV------RLDGADL 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGELAVFrNRVIGFifqfhylLPEfsAIEnvMMPGMIAVSQGRSPSVISHRELYEKAeKLLD--ELALYARKNHKS--- 153
Cdd:TIGR01842 383 KQWDRETF-GKHIGY-------LPQ--DVE--LFPGTVAENIARFGENADPEKIIEAA-KLAGvhELILRLPDGYDTvig 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 154 ---GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNESLSKRCHRTLEMVD 230
Cdd:TIGR01842 450 pggATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPSLLGCVDKILVLQD 528
|
...
gi 1901209871 231 GRL 233
Cdd:TIGR01842 529 GRI 531
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-216 |
1.45e-22 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 94.52 E-value: 1.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympAGELKVlKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGK-VLYKID-KDIDPFslsng 81
Cdd:PRK11607 19 LLEIRNLTKSF---DGQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQiMLDGVDlSHVPPY----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 elavfrNRVIGFIFQFHYLLPEFSAIENVMMpgmiAVSQGRSPSVishrELYEKAEKLLDELALYARKNHKSGELSGGEQ 161
Cdd:PRK11607 90 ------QRPINMMFQSYALFPHMTVEQNIAF----GLKQDKLPKA----EIASRVNEMLGLVHMQEFAKRKPHQLSGGQR 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNE 216
Cdd:PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-221 |
1.59e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 92.42 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 14 FYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDK------PTSGKVLYkIDKDIdpFSLSngelAVFR 87
Cdd:PRK14246 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLY-FGKDI--FQID----AIKL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 88 NRVIGFIFQFHYLLPEFSAIENVMMPGmiavsqgRSPSVISHRELYEKAEKLLDELAL----YARKNHKSGELSGGEQQR 163
Cdd:PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPL-------KSHGIKEKREIKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQR 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGITFIIVTHNESLSKR 221
Cdd:PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNPQQVAR 217
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
23-233 |
1.59e-22 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 91.52 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRNRvIGFIFQFHYLLP 102
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL------IDGIDIRDISRKSLRSM-IGVVLQDTFLFS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 EfSAIENVMMpgmiavsqGRSpsvISHRELYEKAEKL--LDEL------ALYARKNHKSGELSGGEQQRVAVARALLLEP 174
Cdd:cd03254 91 G-TIMENIRL--------GRP---NATDEEVIEAAKEagAHDFimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 175 NVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGR--TSIIIAHRLSTIKNADKILVLDDGKI 215
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
25-233 |
2.61e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 92.20 E-value: 2.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 25 KGIDAV---FNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkIDKDIDPfSLSNGELAVFRNRViGFIFQFhyll 101
Cdd:PRK13641 21 KGLDNIsfeLEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI-AGYHITP-ETGNKNLKKLRKKV-SLVFQF---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEFSAIENVMMPGmiaVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSG-ELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:PRK13641 94 PEAQLFENTVLKD---VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPfELSGGQMRRVAIAGVMAYEPEILCLD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:PRK13641 171 EPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNmDDVAEYADDVLVLEHGKL 223
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
24-232 |
3.76e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 91.83 E-value: 3.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKST-FLHVIGTLdKPTSGKVLYkidkDIDPFSLSNGELAVFRnRVIGFIFQF--HYL 100
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTlFQNLNGIL-KPSSGRILF----DGKPIDYSRKGLMKLR-ESVGMVFQDpdNQL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 lpeFSAienvmmpgmiAVSQGRSPSVIS----HRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNV 176
Cdd:PRK13636 96 ---FSA----------SVYQDVSFGAVNlklpEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 177 VLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGR 232
Cdd:PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDiDIVPLYCDNVFVMKEGR 219
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
13-233 |
4.67e-22 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 94.08 E-value: 4.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGElKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID----KDIDPFSLsngelavfRN 88
Cdd:COG1132 346 SFSYPGDR-PVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRIL--IDgvdiRDLTLESL--------RR 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 89 RvIGFIFQFHYLLpEFSAIENVMMpgmiavsqGRSPsvISHRELYEKAEK-----LLDELA--LYARKNHKSGELSGGEQ 161
Cdd:COG1132 415 Q-IGVVPQDTFLF-SGTIRENIRY--------GRPD--ATDEEVEEAAKAaqaheFIEALPdgYDTVVGERGVNLSGGQR 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNesLS--KRCHRTLEMVDGRL 233
Cdd:COG1132 483 QRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGR--TTIVIAHR--LStiRNADRILVLDDGRI 552
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
27-214 |
5.12e-22 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 92.47 E-value: 5.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 27 IDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSG------KVLYKIDKDIDpfslsngeLAVFRnRVIGFIFQFHYL 100
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGrirlggEVLQDSARGIF--------LPPHR-RRIGYVFQEARL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 LPEFSAIENvmmpgmIAVSQGRSPSVISHRELYEKAEkLLDELALYARKNHKsgeLSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:COG4148 89 FPHLSVRGN------LLYGRKRAPRAERRISFDEVVE-LLGIGHLLDRRPAT---LSGGERQRVAIGRALLSSPRLLLMD 158
|
170 180 190
....*....|....*....|....*....|....
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG4148 159 EPLAALDLARKAEILPYLERLRDELDIPILYVSH 192
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
5-233 |
5.63e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 91.21 E-value: 5.63e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:PRK13632 8 IKVENV--SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK------IDGITISKENLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQ-----FHYLLPE----FSaIENVMmpgmiaVSQGRSPSVISHRELYEKAEKLLDelalyarknHKSGE 155
Cdd:PRK13632 80 EIRKK-IGIIFQnpdnqFIGATVEddiaFG-LENKK------VPPKKMKDIIDDLAKKVGMEDYLD---------KEPQN 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKL 220
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-215 |
6.54e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 90.87 E-value: 6.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGelKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKpTSGKVlyKIDKDIDPFSLSNGELA 84
Cdd:PRK14258 8 IKVNNL--SFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEV--RVEGRVEFFNQNIYERR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRV---IGFIFQFHYLLPeFSAIENVMMpGMIAVsqGRSPSV----ISHRELyeKAEKLLDELAlyaRKNHKSG-EL 156
Cdd:PRK14258 81 VNLNRLrrqVSMVHPKPNLFP-MSVYDNVAY-GVKIV--GWRPKLeiddIVESAL--KDADLWDEIK---HKIHKSAlDL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-232 |
7.56e-22 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 90.37 E-value: 7.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKI--DKDIDPFSL 78
Cdd:PRK11701 3 DQPLLSVRGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdGQLRDLYAL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGEL-AVFRNRvIGFIFQfHY---LLPEFSAIENVMMPGMiAVSQgrspsviSH-RELYEKAEKLLD--ELALyARKNH 151
Cdd:PRK11701 79 SEAERrRLLRTE-WGFVHQ-HPrdgLRMQVSAGGNIGERLM-AVGA-------RHyGDIRATAGDWLErvEIDA-ARIDD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 152 KSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES----LSkrcHRTLE 227
Cdd:PRK11701 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAvarlLA---HRLLV 224
|
....*
gi 1901209871 228 MVDGR 232
Cdd:PRK11701 225 MKQGR 229
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
23-234 |
7.67e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 90.60 E-value: 7.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVLYKiDKDIDpfSLSNGELAvfrnRVIGFIFQFHYLL 101
Cdd:PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALsGEL-SPDSGEVRLN-GRPLA--DWSPAELA----RRRAVLPQHSSLS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEFSAIENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARAL--LLEPN---- 175
Cdd:PRK13548 89 FPFTVEEVVAM--------GRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLaqLWEPDgppr 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 176 VVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRLY 234
Cdd:PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARyADRIVLLHQGRLV 220
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
19-221 |
9.52e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 90.29 E-value: 9.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTL-----------DKPTSGKVLYkiDKDIDPFSLsngelavfr 87
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneearvegEVRLFGRNIY--SPDVDPIEV--------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 88 NRVIGFIFQFHYLLPEFSAIENVmmpgmiAVSQGRSPSVISHRELYEKAEKLLDELALYA----RKNHKSGELSGGEQQR 163
Cdd:PRK14267 84 RREVGMVFQYPNPFPHLTIYDNV------AIGVKLNGLVKSKKELDERVEWALKKAALWDevkdRLNDYPSNLSGGQRQR 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGITFIIVTHNESLSKR 221
Cdd:PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVTHSPAQAAR 213
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
4-219 |
1.25e-21 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 90.21 E-value: 1.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLeksfYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkiDKDIDPfSLSNGEL 83
Cdd:PRK11831 7 LVDMRGV----SFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF--DGENIP-AMSRSRL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQFHYLLPEFSAIENVMMPgmiAVSQGRSPSVISHRELYEKaeklLDELALYARKNHKSGELSGGEQQR 163
Cdd:PRK11831 80 YTVRKR-MSMLFQSGALFTDMNVFDNVAYP---LREHTQLPAPLLHSTVMMK----LEAVGLRGAAKLMPSELSGGMARR 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN--ESLS 219
Cdd:PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDvpEVLS 209
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
35-233 |
1.34e-21 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 91.33 E-value: 1.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 35 EVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVF---RNRVIGFIFQFHYLLPEFSAIENVM 111
Cdd:TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV------LNGRTLFDSRKGIFlppEKRRIGYVFQEARLFPHLSVRGNLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 112 MpgmiavsqGRSPSVISHRELYEkaEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTG 191
Cdd:TIGR02142 98 Y--------GMKRARPSERRISF--ERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRK 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1901209871 192 EELFKLLMDINQKRGITFIIVTHneSLSKRCH---RTLEMVDGRL 233
Cdd:TIGR02142 168 YEILPYLERLHAEFGIPILYVSH--SLQEVLRladRVVVLEDGRV 210
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
2-233 |
1.55e-21 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 89.50 E-value: 1.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkIDKDIDP---FSL 78
Cdd:TIGR02323 1 KPLLQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY-IMRSGAElelYQL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGElavfRNRVI----GFIFQFHY--LLPEFSAIENVmmpgmiavsqGRSPSVISHR---ELYEKAEKLLDELAL-YAR 148
Cdd:TIGR02323 76 SEAE----RRRLMrtewGFVHQNPRdgLRMRVSAGANI----------GERLMAIGARhygNIRATAQDWLEEVEIdPTR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 149 KNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSK-RCHRTLE 227
Cdd:TIGR02323 142 IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARlLAQRLLV 221
|
....*.
gi 1901209871 228 MVDGRL 233
Cdd:TIGR02323 222 MQQGRV 227
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
20-215 |
2.14e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 90.07 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVL---YKIDKDIDPFSlsngELAVFRnRVIGFIFQ 96
Cdd:PRK13645 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIvgdYAIPANLKKIK----EVKRLR-KEIGLVFQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 FhyllPEFS----AIENVMMPGMIAVSQGRspsvishRELYEKAEKLLDELAL---YARKNhkSGELSGGEQQRVAVARA 169
Cdd:PRK13645 98 F----PEYQlfqeTIEKDIAFGPVNLGENK-------QEAYKKVPELLKLVQLpedYVKRS--PFELSGGQKRRVALAGI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1901209871 170 LLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
23-228 |
2.23e-21 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 87.67 E-value: 2.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVlykidkdidpfslsngelAVFRNRVIGFifqfhylL 101
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLaGVL-RPTSGTV------------------RRAGGARVAY-------V 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEFSAIENVMmPGMI--AVSQGRSPsvisHRELYEK--------AEKLLDELALYARKNHKSGELSGGEQQRVAVARALL 171
Cdd:NF040873 61 PQRSEVPDSL-PLTVrdLVAMGRWA----RRGLWRRltrddraaVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLA 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 172 LEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNESLSKRCHRTLEM 228
Cdd:NF040873 136 QEADLLLLDEPTTGLDAESRERIIALLAEE-HARGATVVVVTHDLELVRRADPCVLL 191
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
5-233 |
2.78e-21 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 91.73 E-value: 2.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLeksFYMPAGELK-VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVLykIDkDIDPFSLSNGE 82
Cdd:COG4618 331 LSVENL---TVVPPGSKRpILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLvGVW-PPTAGSVR--LD-GADLSQWDREE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 LAvfrnRVIGFifqfhylLPEfsAIEnvMMPGMIAVSQGRSPSVIShrELYEKAEKL--LDELAL-----YarkNHKSGE 155
Cdd:COG4618 404 LG----RHIGY-------LPQ--DVE--LFDGTIAENIARFGDADP--EKVVAAAKLagVHEMILrlpdgY---DTRIGE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 156 ----LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTkTGEE-LFKLLMDInQKRGITFIIVTHNESLSKRCHRTLEMVD 230
Cdd:COG4618 464 ggarLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDD-EGEAaLAAAIRAL-KARGATVVVITHRPSLLAAVDKLLVLRD 541
|
...
gi 1901209871 231 GRL 233
Cdd:COG4618 542 GRV 544
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
20-214 |
3.11e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 89.91 E-value: 3.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVL---YKIDKDIDPFSLSNGELAV----FRN--RV 90
Cdd:PRK13631 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQvgdIYIGDKKNNHELITNPYSKkiknFKElrRR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 91 IGFIFQFhyllPEF----SAIENVMMPGMIAVSQGRSpsvishrELYEKAEKLLDELAL-YARKNHKSGELSGGEQQRVA 165
Cdd:PRK13631 118 VSMVFQF----PEYqlfkDTIEKDIMFGPVALGVKKS-------EAKKLAKFYLNKMGLdDSYLERSPFGLSGGQKRRVA 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1901209871 166 VARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDiNQKRGITFIIVTH 214
Cdd:PRK13631 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITH 234
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
39-234 |
4.57e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 88.65 E-value: 4.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 39 IVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgelavFRNRvIGFIFQfhyllpefsAIENVMMPGMIA- 117
Cdd:PRK13648 40 IVGHNGSGKSTIAKLMIGIEKVKSGEIFYN-NQAITDDNFEK-----LRKH-IGIVFQ---------NPDNQFVGSIVKy 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 118 -VSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFK 196
Cdd:PRK13648 104 dVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
|
170 180 190
....*....|....*....|....*....|....*...
gi 1901209871 197 LLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRLY 234
Cdd:PRK13648 184 LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVY 221
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
13-233 |
4.60e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 87.93 E-value: 4.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIG 92
Cdd:cd03252 7 RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL------VDGHDLALADPAWLR-RQVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLLPEfSAIENVMM--PGM------IAVSQGRSPSVIshRELYEKAEKLLDElalyarknhKSGELSGGEQQRV 164
Cdd:cd03252 80 VVLQENVLFNR-SIRDNIALadPGMsmerviEAAKLAGAHDFI--SELPEGYDTIVGE---------QGAGLSGGQRQRI 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR--TVIIIAHRLSTVKNADRIIVMEKGRI 214
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
20-233 |
6.23e-21 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 87.67 E-value: 6.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIGFIFQfhy 99
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL------IDGQDIREVTLDSLR-RAIGVVPQ--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 100 llpefsaiENVMMPGMIA--VSQGRsPSViSHRELYE--KAEKLLDE-LALYARKNHKSGE----LSGGEQQRVAVARAL 170
Cdd:cd03253 83 --------DTVLFNDTIGynIRYGR-PDA-TDEEVIEaaKAAQIHDKiMRFPDGYDTIVGErglkLSGGEKQRVAIARAI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 171 LLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAHRLSTIVNADKIIVLKDGRI 213
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
5-231 |
1.03e-20 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 90.25 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELkVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI--------GTLDKPTSGKVLykidkdidpf 76
Cdd:COG4178 363 LALEDL--TLRTPDGRP-LLEDLSLSLKPGERLLITGPSGSGKSTLLRAIaglwpygsGRIARPAGARVL---------- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 slsngelavfrnrvigFIFQFHYLlPEFSAIENVMMPGmiavsqgrSPSVISHRELYEKAEKL-LDELA--LYARKNhKS 153
Cdd:COG4178 430 ----------------FLPQRPYL-PLGTLREALLYPA--------TAEAFSDAELREALEAVgLGHLAerLDEEAD-WD 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLmdINQKRGITFIIVTHNESLSKRCHRTLEMVDG 231
Cdd:COG4178 484 QVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLL--REELPGTTVISVGHRSTLAAFHDRVLELTGD 559
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
5-234 |
1.08e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 86.43 E-value: 1.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSF------------------YMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVl 66
Cdd:cd03220 1 IELENVSKSYptykggssslkklgilgrKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 67 yKIDKDIDPfslsngelavfrnrVIGFIFQFHyllPEFSAIENVMMPGMIavsQGRSPSVISHR--ELYEKAEklldela 144
Cdd:cd03220 80 -TVRGRVSS--------------LLGLGGGFN---PELTGRENIYLNGRL---LGLSRKEIDEKidEIIEFSE------- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 145 LYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNESLSKR-CH 223
Cdd:cd03220 132 LGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL-LKQGKTVILVSHDPSSIKRlCD 210
|
250
....*....|.
gi 1901209871 224 RTLEMVDGRLY 234
Cdd:cd03220 211 RALVLEKGKIR 221
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
5-234 |
1.63e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 86.62 E-value: 1.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKST-FLHVIGtLDKPTSGKVLYKiDKDIDPFSLSNgel 83
Cdd:COG1137 4 LEAENLVKSY----GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTtFYMIVG-LVKPDSGRIFLD-GEDITHLPMHK--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 avfRNRV-IGFIFQ----FHYLlpefSAIENVMmpgmiAVSQGRSPSvisHRELYEKAEKLLDELALYARKNHKSGELSG 158
Cdd:COG1137 75 ---RARLgIGYLPQeasiFRKL----TVEDNIL-----AVLELRKLS---KKEREERLEELLEEFGITHLRKSKAYSLSG 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNEslskrcHRTLEMVDgRLY 234
Cdd:COG1137 140 GERRRVEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHL-KERGIGVLITDHNV------RETLGICD-RAY 207
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-218 |
1.73e-20 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 86.58 E-value: 1.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpfSLSN 80
Cdd:PRK11300 2 SQPLLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR-GQHIE--GLPG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAvfRNRVIGfIFQFHYLLPEFSAIENVM-----------MPGMIAVSQGRSpsviSHRELYEKAEKLLDELALYARK 149
Cdd:PRK11300 75 HQIA--RMGVVR-TFQHVRLFREMTVIENLLvaqhqqlktglFSGLLKTPAFRR----AESEALDRAATWLERVGLLEHA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 150 NHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESL 218
Cdd:PRK11300 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
22-233 |
1.90e-20 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 89.41 E-value: 1.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIGFIFQFHYLL 101
Cdd:TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL------LNGFSLKDIDRHTLR-QFINYLPQEPYIF 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 pEFSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLldELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADE 181
Cdd:TIGR01193 561 -SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENM--PLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 182 PTGNLDTKTGEELFKLLMDINQKrgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:TIGR01193 638 STSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQSDKIIVLDHGKI 686
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
32-233 |
1.92e-20 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 85.68 E-value: 1.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 32 NEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKIDkDIDPFSLSNGElavfrnRVIGFIFQFHYLLPEFSAIENVM 111
Cdd:TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI--KVN-DQSHTGLAPYQ------RPVSMLFQENNLFAHLTVRQNIG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 112 MpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTG 191
Cdd:TIGR01277 93 L--------GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1901209871 192 EELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:TIGR01277 165 EEMLALVKQLCSERQRTLLMVTHHlSDARAIASQIAVVSQGKI 207
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-210 |
2.30e-20 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 88.91 E-value: 2.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFymPAgeLKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsN 80
Cdd:PRK10762 1 MQALLQLKGIDKAF--PG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY------------L 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRN------RVIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRspsvISHRELYEKAEKLLDELALYARKNHKSG 154
Cdd:PRK10762 65 GKEVTFNGpkssqeAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSDKLVG 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 155 ELSGGEQQRVAVARALLLEPNVVLADEPTGNL-DTKTgEELFKLLMDI-NQKRGITFI 210
Cdd:PRK10762 141 ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALtDTET-ESLFRVIRELkSQGRGIVYI 197
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
34-234 |
2.77e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 85.79 E-value: 2.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 34 AEVVGIVGASGVGKSTFLHVIGTLDKPTSGKV-LYKIDKDIDPFSlsngelavfrNRVIGFIFQFHYLLPEFSAIENV-- 110
Cdd:PRK10771 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLtLNGQDHTTTPPS----------RRPVSMLFQENNLFSHLTVAQNIgl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 111 -MMPGM-IAVSQgrspsvisHRELYEKAEK-----LLDELAlyarknhksGELSGGEQQRVAVARALLLEPNVVLADEPT 183
Cdd:PRK10771 95 gLNPGLkLNAAQ--------REKLHAIARQmgiedLLARLP---------GQLSGGQRQRVALARCLVREQPILLLDEPF 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 184 GNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRLY 234
Cdd:PRK10771 158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSlEDAARIAPRSLVVADGRIA 209
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
2-217 |
4.73e-20 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 86.94 E-value: 4.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkDIDPFSLSNG 81
Cdd:PRK11308 9 IDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQ---GQDLLKADPE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 ELAVFRnRVIGFIFQFHY--LLPEfSAIENVMM-PGMIAVSQGRSpsvishrelyEKAEKLLDELAL-------YARKNH 151
Cdd:PRK11308 86 AQKLLR-QKIQIVFQNPYgsLNPR-KKVGQILEePLLINTSLSAA----------ERREKALAMMAKvglrpehYDRYPH 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 152 KsgeLSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:PRK11308 154 M---FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-233 |
8.27e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 87.43 E-value: 8.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVlyKIdkdidpfslsn 80
Cdd:COG0488 313 KKVLELEGLSKSY----GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLaGEL-EPDSGTV--KL----------- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GElavfrNRVIGFIFQFH-YLLPEFSAIENVM--MPGM--IAVSQ--GR---SPsvishrelyEKAEKlldelalyarkn 150
Cdd:COG0488 375 GE-----TVKIGYFDQHQeELDPDKTVLDELRdgAPGGteQEVRGylGRflfSG---------DDAFK------------ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 151 hKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqkrGiTFIIVTHNES-LSKRCHRTLEMV 229
Cdd:COG0488 429 -PVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDFP---G-TVLLVSHDRYfLDRVATRILEFE 503
|
....
gi 1901209871 230 DGRL 233
Cdd:COG0488 504 DGGV 507
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-231 |
9.25e-20 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 87.15 E-value: 9.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPF---- 76
Cdd:PRK09700 2 ATPYISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN-NINYNKLdhkl 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 SLSNGelavfrnrvIGFIFQFHYLLPEFSAIENVMMpGMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGEL 156
Cdd:PRK09700 77 AAQLG---------IGIIYQELSVIDELTVLENLYI-GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANL 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFkLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDG 231
Cdd:PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF-LIMNQLRKEGTAIVYISHKLAEIRRiCDRYTVMKDG 221
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-232 |
9.27e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 83.87 E-value: 9.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkdidpfslSNGELA 84
Cdd:cd03269 1 LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD----------GKPLDI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQFHYLLPEFSAIENVMmpgMIAVSQGRSPSVISHRelyekAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:cd03269 67 AARNR-IGYLPEERGLYPKMKVIDQLV---YLAQLKGLKKEEARRR-----IDEWLERLELSEYANKRVEELSKGNQQKV 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTkTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRTLEMVDGR 232
Cdd:cd03269 138 QFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQmELVEELCDRVLLLNKGR 205
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
35-215 |
9.47e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 84.83 E-value: 9.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 35 EVVGIVGASGVGKSTFLHVIGTLDK--PT---SGKVLYK----IDKDIDPFSLsngelavfRNRvIGFIFQFHYLLPEfS 105
Cdd:PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDliPGfrvEGKVTFHgknlYAPDVDPVEV--------RRR-IGMVFQKPNPFPK-S 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 106 AIENVMMPGMIAVSQGrspsvishrELYEKAEKLLDELALYAR---KNHKSG-ELSGGEQQRVAVARALLLEPNVVLADE 181
Cdd:PRK14243 107 IYDNIAYGARINGYKG---------DMDELVERSLRQAALWDEvkdKLKQSGlSLSGGQQQRLCIARAIAVQPEVILMDE 177
|
170 180 190
....*....|....*....|....*....|....*..
gi 1901209871 182 PTGNLD---TKTGEELFKLLmdinqKRGITFIIVTHN 215
Cdd:PRK14243 178 PCSALDpisTLRIEELMHEL-----KEQYTIIIVTHN 209
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-214 |
1.29e-19 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 86.62 E-value: 1.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsN 80
Cdd:COG3845 2 MPPALELRGITKRF----GGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILI------------D 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRN-RV-----IGFIFQfHYLL-PEFSAIENVMMpGMiavsQGRSPSVISHRELYEKAEKLLDELALYARKNHKS 153
Cdd:COG3845 66 GKPVRIRSpRDaialgIGMVHQ-HFMLvPNLTVAENIVL-GL----EPTKGGRLDRKAARARIRELSERYGLDVDPDAKV 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTH 214
Cdd:COG3845 140 EDLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRL-AAEGKSIIFITH 199
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-233 |
1.32e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 83.98 E-value: 1.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSF------------------YMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTS 62
Cdd:COG1134 1 MSSMIEVENVSKSYrlyhepsrslkelllrrrRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 63 GKVlyKIDKDID-PFSLSNGelavfrnrvigfifqFHyllPEFSAIENVMMPGMIavsQGRSPSVIshrelyekaEKLLD 141
Cdd:COG1134 81 GRV--EVNGRVSaLLELGAG---------------FH---PELTGRENIYLNGRL---LGLSRKEI---------DEKFD 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 142 ELALYArknhksgEL-----------SGGEQQRVAVARALLLEPNVVLADEPTGnldtkTGEELFK-----LLMDInQKR 205
Cdd:COG1134 129 EIVEFA-------ELgdfidqpvktySSGMRARLAFAVATAVDPDILLVDEVLA-----VGDAAFQkkclaRIREL-RES 195
|
250 260
....*....|....*....|....*....
gi 1901209871 206 GITFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:COG1134 196 GRTVIFVSHSmGAVRRLCDRAIWLEKGRL 224
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
19-214 |
1.40e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.98 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIG--TLDKPTSGKVLYKiDKDIDPFSLSngelavfrnRVIGFIFQ 96
Cdd:cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLIN-GRPLDKRSFR---------KIIGYVPQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 FHYLLPEFSAIENVMMpgmIAVSQGrspsvishrelyekaeklldelalyarknhksgeLSGGEQQRVAVARALLLEPNV 176
Cdd:cd03213 90 DDILHPTLTVRETLMF---AAKLRG----------------------------------LSGGERKRVSIALELVSNPSL 132
|
170 180 190
....*....|....*....|....*....|....*...
gi 1901209871 177 VLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTH 214
Cdd:cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIH 169
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
14-232 |
1.56e-19 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 85.53 E-value: 1.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 14 FYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkIDKDIdpFSLSNGELAVFRNRvIGF 93
Cdd:PRK15079 27 FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW-LGKDL--LGMKDDEWRAVRSD-IQM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 94 IFQfhyllPEFSAIENVMMPGMIAVSQGRS--PSvISHRELYEKAEKLLDELALYA----RKNHksgELSGGEQQRVAVA 167
Cdd:PRK15079 103 IFQ-----DPLASLNPRMTIGEIIAEPLRTyhPK-LSRQEVKDRVKAMMLKVGLLPnlinRYPH---EFSGGQCQRIGIA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 168 RALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKrcH---RTLEMVDGR 232
Cdd:PRK15079 174 RALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVK--HisdRVLVMYLGH 239
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
23-233 |
1.67e-19 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 84.01 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVLYKiDKDIDpfSLSNGELAvfRNRVIgfifqfhylL 101
Cdd:COG4559 16 LLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLtGEL-TPSSGEVRLN-GRPLA--AWSPWELA--RRRAV---------L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PE-------FSAIENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALL--- 171
Cdd:COG4559 81 PQhsslafpFTVEEVVAL--------GRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlw 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 172 ----LEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:COG4559 153 epvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLAR-RGGGVVAVLHDLNLAAQyADRILLLHQGRL 218
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
5-233 |
1.86e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 83.54 E-value: 1.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYM---PAG--------------ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLY 67
Cdd:cd03267 1 IEVSNLSKSYRVyskEPGligslkslfkrkyrEVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 68 KidkDIDPFSLSNGELavfrnRVIGFIF-QFHYLLPEFSAIENVMMpgMIAVSQgrspsvISHRELYEKAEKLLDELALY 146
Cdd:cd03267 81 A---GLVPWKRRKKFL-----RRIGVVFgQKTQLWWDLPVIDSFYL--LAAIYD------LPPARFKKRLDELSELLDLE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 147 ARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHRT 225
Cdd:cd03267 145 ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYmKDIEALARRV 224
|
....*...
gi 1901209871 226 LEMVDGRL 233
Cdd:cd03267 225 LVIDKGRL 232
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-214 |
2.03e-19 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 85.28 E-value: 2.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykID----KDIDPfslsn 80
Cdd:PRK11650 4 LKLQAVRKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW--IGgrvvNELEP----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gelavfRNRVIGFIFQFHYLLPEFSAIENvMMPGM-IAvsqGRSPSVISHRelYEKAEKLLDELALYARKNHksgELSGG 159
Cdd:PRK11650 74 ------ADRDIAMVFQNYALYPHMSVREN-MAYGLkIR---GMPKAEIEER--VAEAARILELEPLLDRKPR---ELSGG 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTK----TGEELFKLlmdinQKR-GITFIIVTH 214
Cdd:PRK11650 139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKlrvqMRLEIQRL-----HRRlKTTSLYVTH 193
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
23-214 |
2.47e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 83.98 E-value: 2.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykIDKDIDPFSLSNgeLAVFRNRViGFIFQfhyllp 102
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV---YVDGLDTSDEEN--LWDIRNKA-GMVFQ------ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 efsAIENVMMPGMIA--VSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:PRK13633 93 ---NPDNQIVATIVEedVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFD 169
|
170 180 190
....*....|....*....|....*....|....
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:PRK13633 170 EPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-234 |
4.18e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 83.53 E-value: 4.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLekSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDIDPFSLSN 80
Cdd:PRK13635 2 KEEIIRVEHI--SFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI------TVGGMVLSE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRnRVIGFIFQ----------------FhyllpefsAIENVMMPgmiavsqgrspsvisHRELYEKAEKLLDELA 144
Cdd:PRK13635 74 ETVWDVR-RQVGMVFQnpdnqfvgatvqddvaF--------GLENIGVP---------------REEMVERVDQALRQVG 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 145 LYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHR 224
Cdd:PRK13635 130 MEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADR 209
|
250
....*....|
gi 1901209871 225 TLEMVDGRLY 234
Cdd:PRK13635 210 VIVMNKGEIL 219
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
19-234 |
4.39e-19 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 82.83 E-value: 4.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKD---IDPFSLsngelavfRNRvIGFI- 94
Cdd:COG1119 14 GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVRLFGERrggEDVWEL--------RKR-IGLVs 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 95 -FQFHYLLPEFSAIEnvmmpgmiAVSQGRSPSVISHREL----YEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARA 169
Cdd:COG1119 85 pALQLRFPRDETVLD--------VVLSGFFDSIGLYREPtdeqRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 170 LLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRC-HRTLEMVDGRLY 234
Cdd:COG1119 157 LVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGiTHVLLLKDGRVV 222
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-233 |
5.50e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 82.52 E-value: 5.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLekSFYMpaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDK-----PTSGKVLYKiDKDIDP 75
Cdd:PRK14239 2 TEPILQVSDL--SVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDlnpevTITGSIVYN-GHNIYS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 76 FSLSNGELavfrNRVIGFIFQFHYLLPeFSAIENVMMpGMiavsqgRSPSVISHRELYEKAEKLLDELALYAR---KNHK 152
Cdd:PRK14239 77 PRTDTVDL----RKEIGMVFQQPNPFP-MSIYENVVY-GL------RLKGIKDKQVLDEAVEKSLKGASIWDEvkdRLHD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 153 SG-ELSGGEQQRVAVARALLLEPNVVLADEPTGNLD----TKTGEELFKLlmdinqKRGITFIIVTHN-ESLSKRCHRTL 226
Cdd:PRK14239 145 SAlGLSGGQQQRVCIARVLATSPKIILLDEPTSALDpisaGKIEETLLGL------KDDYTMLLVTRSmQQASRISDRTG 218
|
....*..
gi 1901209871 227 EMVDGRL 233
Cdd:PRK14239 219 FFLDGDL 225
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
10-217 |
9.29e-19 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 84.33 E-value: 9.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 10 LEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPtsgkvlykiDKDIDPFSLSNGEL--AVFR 87
Cdd:TIGR00955 27 LRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK---------GVKGSGSVLLNGMPidAKEM 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 88 NRVIGFIFQFHYLLPEFSAIENVMMPGMIavsqgRSPSVISHRELYEKAEKLLDELALYARKNHKSGE------LSGGEQ 161
Cdd:TIGR00955 98 RAISAYVQQDDLFIPTLTVREHLMFQAHL-----RMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGER 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNES 217
Cdd:TIGR00955 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPS 227
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
8-215 |
9.49e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 83.93 E-value: 9.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 8 EGLEKSFYMPAGELKV-LKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGELAVF 86
Cdd:PRK10070 27 QGLSKEQILEKTGLSLgVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL--ID-GVDIAKISDAELREV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 87 RNRVIGFIFQFHYLLPEFSAIENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAV 166
Cdd:PRK10070 104 RRKKIAMVFQSFALMPHMTVLDNTAF--------GMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1901209871 167 ARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK10070 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-233 |
9.56e-19 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 83.74 E-value: 9.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGELA 84
Cdd:PRK09536 4 IDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL--VA-GDDVEALSARAAS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrnRVIGFIFQFHYLLPEFSAIENVMMpgmiavsqGRSPsvisHRELYEKA--------EKLLDELALYARKNHKSGEL 156
Cdd:PRK09536 77 ----RRVASVPQDTSLSFEFDVRQVVEM--------GRTP----HRSRFDTWtetdraavERAMERTGVAQFADRPVTSL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLD----TKTGEELFKLLMDinqkrGITFIIVTHNESLSKR-CHRTLEMVDG 231
Cdd:PRK09536 141 SGGERQRVLLARALAQATPVLLLDEPTASLDinhqVRTLELVRRLVDD-----GKTAVAAIHDLDLAARyCDELVLLADG 215
|
..
gi 1901209871 232 RL 233
Cdd:PRK09536 216 RV 217
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-232 |
9.72e-19 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 83.24 E-value: 9.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKS-TFLHVIGTLDKP--TSGKVLYKiDKDIdpFS 77
Cdd:PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLLAANgrIGGSATFN-GREI--LN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 LSNGELAVFRNRVIGFIFQ--FHYLLPEFSAIENVMMPGMIavSQGrspsvISHRELYEKAEKLLDELAL-YARKNHK-- 152
Cdd:PRK09473 86 LPEKELNKLRAEQISMIFQdpMTSLNPYMRVGEQLMEVLML--HKG-----MSKAEAFEESVRMLDAVKMpEARKRMKmy 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 153 SGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNES-LSKRCHRTLEMVDG 231
Cdd:PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGvVAGICDKVLVMYAG 238
|
.
gi 1901209871 232 R 232
Cdd:PRK09473 239 R 239
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
23-215 |
1.33e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 81.67 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKvlykIDKDIDPFSLSNGELAVfrnrvigfIFQFHYLLP 102
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS----ITLDGKPVEGPGAERGV--------VFQNEGLLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 EFSAIENVMMpgmiavsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEP 182
Cdd:PRK11248 84 WRNVQDNVAF--------GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155
|
170 180 190
....*....|....*....|....*....|...
gi 1901209871 183 TGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
22-233 |
1.39e-18 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 80.17 E-value: 1.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgelavFRNRVIGFI---FQFH 98
Cdd:cd03215 14 GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD-GKPVTRRSPRD-----AIRAGIAYVpedRKRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 YLLPEFSAIENVMMPGMiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQRVAVARALLLEPNVVL 178
Cdd:cd03215 88 GLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLI 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 179 ADEPTGNLDTKTGEELFKLLMDINQkRGITFIIV-THNESLSKRCHRTLEMVDGRL 233
Cdd:cd03215 128 LDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLIsSELDELLGLCDRILVMYEGRI 182
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
5-232 |
2.64e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 81.78 E-value: 2.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkIDKDIDpfslsnGELA 84
Cdd:PRK13537 8 IDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL-CGEPVP------SRAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRViGFIFQFHYLLPEFSAIENVMMPGMIAVsqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:PRK13537 77 HARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFG--------LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTG----EELFKLLmdinqKRGITFIIVTH-NESLSKRCHRTLEMVDGR 232
Cdd:PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARhlmwERLRSLL-----ARGKTILLTTHfMEEAERLCDRLCVIEEGR 215
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
25-215 |
3.19e-18 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 81.84 E-value: 3.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 25 KGIDAVFneaevvgivGASGVGKSTFLHVIGTLDKPTSGK------VLYKIDKDIDpfslsngeLAVFRNRvIGFIFQFH 98
Cdd:PRK11144 24 QGITAIF---------GRSGAGKTSLINAISGLTRPQKGRivlngrVLFDAEKGIC--------LPPEKRR-IGYVFQDA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 YLLPEFSAIENVMMpGMIAVSQGRSPSVISHRELyekaEKLLDELALyarknhksgELSGGEQQRVAVARALLLEPNVVL 178
Cdd:PRK11144 86 RLFPHYKVRGNLRY-GMAKSMVAQFDKIVALLGI----EPLLDRYPG---------SLSGGEKQRVAIGRALLTAPELLL 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 1901209871 179 ADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
4-214 |
3.26e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 81.32 E-value: 3.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSfYMPAGEL--KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKIDKDIDPFSLSNG 81
Cdd:PRK13643 1 MIKFEKVNYT-YQPNSPFasRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV--TVGDIVVSSTSKQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 ELAVFRNRViGFIFQFhyllPEFSAIENVMMPGmiaVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSG-ELSGGE 160
Cdd:PRK13643 78 EIKPVRKKV-GVVFQF----PESQLFEETVLKD---VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPfELSGGQ 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH 214
Cdd:PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTH 202
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-224 |
4.96e-18 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 82.45 E-value: 4.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELK-------VLKGIDAVFNEAEVVGIVGASGVGKST----FLHVIgtldkPTSGKVLYkidkD 72
Cdd:PRK15134 275 LLDVEQLQVAFPIRKGILKrtvdhnvVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWF----D 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 73 IDPF-SLSNGELAVFRNRvIGFIFQFHY--LLPEFSaIENVMMPGMiAVSQgrspSVISHRELYEKAEKLLDELALYARK 149
Cdd:PRK15134 346 GQPLhNLNRRQLLPVRHR-IQVVFQDPNssLNPRLN-VLQIIEEGL-RVHQ----PTLSAAQREQQVIAVMEEVGLDPET 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 150 NHK-SGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHR 224
Cdd:PRK15134 419 RHRyPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDlHVVRALCHQ 495
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
13-233 |
6.51e-18 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 78.12 E-value: 6.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVfrNRVIG 92
Cdd:cd03247 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT------LDGVPVSDLEKAL--SSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLlpeFSAienvmmpgmiavsqgrspsvishrelyekaeKLLDELALyarknhksgELSGGEQQRVAVARALLL 172
Cdd:cd03247 79 VLNQRPYL---FDT-------------------------------TLRNNLGR---------RFSGGERQRLALARILLQ 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 173 EPNVVLADEPTGNLDTKTGEELFKLLMDinQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFE--VLKDKTLIWITHHLTGIEHMDKILFLENGKI 174
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-214 |
7.34e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 81.79 E-value: 7.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI------GTLDkptsGKVLYKiDKDIDPFS 77
Cdd:TIGR02633 1 LLEMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILsgvyphGTWD----GEIYWS-GSPLKASN 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 LSNGELAVfrnrvIGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRspsvISHRELYEKAEKLLDELALYARKNHKS-GEL 156
Cdd:TIGR02633 72 IRDTERAG-----IVIIHQELTLVPELSVAENIFLGNEITLPGGR----MAYNAMYLRAKNLLRELQLDADNVTRPvGDY 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTH 214
Cdd:TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISH 199
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-233 |
7.82e-18 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 81.83 E-value: 7.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGEL-KVLKGIDAVFN------EAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDpf 76
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGLLnRVTREVHAVEKvsfdlwPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFN-GQRID-- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 SLSNGELAVFRnRVIGFIFQFHY--LLPEFSAIENVMMPGmiavsqgRSPSVISHRELYEKAEKLLDELALYA----RKN 150
Cdd:PRK10261 390 TLSPGKLQALR-RDIQFIFQDPYasLDPRQTVGDSIMEPL-------RVHGLLPGKAAAARVAWLLERVGLLPehawRYP 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 151 HksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMV 229
Cdd:PRK10261 462 H---EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERiSHRVAVMY 538
|
....
gi 1901209871 230 DGRL 233
Cdd:PRK10261 539 LGQI 542
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-220 |
9.23e-18 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 79.45 E-value: 9.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFYMPAG-----ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDP 75
Cdd:PRK15112 1 VETLLEVRNLSKTFRYRTGwfrrqTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL------IDD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 76 FSLSNGELAvFRNRVIGFIFQfhyllPEFSAIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLLDELALyaRKNHKS-- 153
Cdd:PRK15112 75 HPLHFGDYS-YRSQRIRMIFQ-----DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDHASyy 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 154 -GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSK 220
Cdd:PRK15112 147 pHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMK 214
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
23-233 |
9.57e-18 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 78.67 E-value: 9.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkDIDPFSLSNGElavFRNRVIGFIFQFHYLlp 102
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL----DGKPISQYEHK---YLHSKVSLVGQEPVL-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 eFS-AIENVMMPGMIAVSQGR--SPSVISHrelyekAEKLLDELAL--YARKNHKSGELSGGEQQRVAVARALLLEPNVV 177
Cdd:cd03248 100 -FArSLQDNIAYGLQSCSFECvkEAAQKAH------AHSFISELASgyDTEVGEKGSQLSGGQKQRVAIARALIRNPQVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 178 LADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03248 173 ILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-233 |
1.37e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 79.37 E-value: 1.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGkVLYKIDKDIDPFSLSN-GELAVFRNRViGFIFQFHYLL 101
Cdd:PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGDVLLGGRSIFNyRDVLEFRRRV-GMLFQRPNPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PeFSAIENVMmpgmiavSQGRSPSVISHRELYEKAEKLLDELALY-ARKNHKSG---ELSGGEQQRVAVARALLLEPNVV 177
Cdd:PRK14271 114 P-MSIMDNVL-------AGVRAHKLVPRKEFRGVAQARLTEVGLWdAVKDRLSDspfRLSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 178 LADEPTGNLDTKTGEELFKLLMDINQKrgITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARiSDRAALFFDGRL 240
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-214 |
1.55e-17 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 78.59 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSNGELA 84
Cdd:COG4604 2 IEIKNVSKRY----GGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVL--VD-GLDVATTPSRELA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrnRVIGFIFQFHYLLPEFSAIENVMMpGMIAVSQGRsPSVISHR---------ELYEKAEKLLDELalyarknhksge 155
Cdd:COG4604 75 ----KRLAILRQENHINSRLTVRELVAF-GRFPYSKGR-LTAEDREiideaiaylDLEDLADRYLDEL------------ 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 lSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG4604 137 -SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLH 194
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
5-230 |
1.57e-17 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 76.81 E-value: 1.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELkVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI--------GTLDKPTSGKVLykidkdidpf 76
Cdd:cd03223 1 IELENL--SLATPDGRV-LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALaglwpwgsGRIGMPEGEDLL---------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 slsngelavfrnrvigFIFQFHYLlpefsaienvmmpgmiavSQGRspsvishrelyekaeklLDELALYARKNhksgEL 156
Cdd:cd03223 68 ----------------FLPQRPYL------------------PLGT-----------------LREQLIYPWDD----VL 92
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLDtktgEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVD 230
Cdd:cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALD----EESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
4-233 |
2.11e-17 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 79.40 E-value: 2.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKS-TFLHVIGTLDKPtsGKVLY-KIDKD-IDPFSLSN 80
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYP--GRVMAeKLEFNgQDLQRISE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GElavfRNRVIG----FIFQ--FHYLLPEFSAIENVMMPgmIAVSQGRSpsvisHRELYEKAEKLLDELAL---YARKNH 151
Cdd:PRK11022 81 KE----RRNLVGaevaMIFQdpMTSLNPCYTVGFQIMEA--IKVHQGGN-----KKTRRQRAIDLLNQVGIpdpASRLDV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 152 KSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESL-SKRCHRTLEMVD 230
Cdd:PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALvAEAAHKIIVMYA 229
|
...
gi 1901209871 231 GRL 233
Cdd:PRK11022 230 GQV 232
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
16-214 |
2.37e-17 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 77.70 E-value: 2.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 16 MPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLD---KPTSGKVLYkidkdidpfslsNGE---LAVFRNR 89
Cdd:cd03234 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVeggGTTSGQILF------------NGQprkPDQFQKC 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 90 ViGFIFQFHYLLPEFSAIENVMMPGMIAVSQGRSPSVISHRElyekAEKLLDELALYARKNHKSGELSGGEQQRVAVARA 169
Cdd:cd03234 83 V-AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV----EDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1901209871 170 LLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTH 214
Cdd:cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQL-ARRNRIVILTIH 201
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
15-218 |
3.22e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 78.31 E-value: 3.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 15 YMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKST-FLHVIGTLdKPTSGKVLYKIDkdidPFSLSNgeLAVFRnRVIGF 93
Cdd:PRK13652 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTlFRHFNGIL-KPTSGSVLIRGE----PITKEN--IREVR-KFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 94 IFQFhyllPE---FS-AIENVMMPGMIAVsqGRSPSVISHRelYEKAEKLLDELALYARKNHksgELSGGEQQRVAVARA 169
Cdd:PRK13652 83 VFQN----PDdqiFSpTVEQDIAFGPINL--GLDEETVAHR--VSSALHMLGLEELRDRVPH---HLSGGEKKRVAIAGV 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1901209871 170 LLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESL 218
Cdd:PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
20-214 |
3.24e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 78.25 E-value: 3.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSlSNGELAVFRNRViGFIFQFhy 99
Cdd:PRK13649 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD-DTLITSTS-KNKDIKQIRKKV-GLVFQF-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 100 llPEFSAIENVMM------PGMIAVSQgrspsvishrelyEKAEKLLDE-LALYARK----NHKSGELSGGEQQRVAVAR 168
Cdd:PRK13649 94 --PESQLFEETVLkdvafgPQNFGVSQ-------------EEAEALAREkLALVGISeslfEKNPFELSGGQMRRVAIAG 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1901209871 169 ALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH 214
Cdd:PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTH 203
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
4-233 |
3.40e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 78.11 E-value: 3.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLekSFYMPAGElKVLKGIDAVFNEAEVVGIVGASGVGKSTF-LHVIGTLdKPTSGKVLYKIDKDIDPFSLSNge 82
Cdd:PRK13644 1 MIRLENV--SYSYPDGT-PALENINLVIKKGEYIGIIGKNGSGKSTLaLHLNGLL-RPQKGKVLVSGIDTGDFSKLQG-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 83 lavfRNRVIGFIFQFhyllPEFSAI------------ENVMMPGMiavsqgrspsvishrELYEKAEKLLDELALYARKN 150
Cdd:PRK13644 75 ----IRKLVGIVFQN----PETQFVgrtveedlafgpENLCLPPI---------------EIRKRVDRALAEIGLEKYRH 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 151 HKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKRCHRTLEMVD 230
Cdd:PRK13644 132 RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDR 210
|
...
gi 1901209871 231 GRL 233
Cdd:PRK13644 211 GKI 213
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
5-232 |
4.85e-17 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 74.79 E-value: 4.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKIDKDIDpfslsngela 84
Cdd:cd03221 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV--TWGSTVK---------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrnrvIGFIFQfhyllpefsaienvmmpgmiavsqgrspsvishrelyekaeklldelalyarknhksgeLSGGEQQRV 164
Cdd:cd03221 65 ------IGYFEQ-----------------------------------------------------------LSGGEKMRL 79
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLmdiNQKRGiTFIIVTHNES-LSKRCHRTLEMVDGR 232
Cdd:cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL---KEYPG-TVILVSHDRYfLDQVATKIIELEDGK 144
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
19-215 |
5.35e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 77.23 E-value: 5.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIdpfslSNGELAVFRNRVIGFIFQFH 98
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD-GKDI-----TDWQTAKIMREAVAIVPEGR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 YLLPEFSAIENVMMPGMIAvsqgrspsvisHRELYEKAEKLLDEL--ALYARKNHKSGELSGGEQQRVAVARALLLEPNV 176
Cdd:PRK11614 90 RVFSRMTVEENLAMGGFFA-----------ERDQFQERIKWVYELfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 1901209871 177 VLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHN 215
Cdd:PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQN 196
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
18-215 |
6.17e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 76.68 E-value: 6.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 18 AGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSngelaVFRNRViGFIFQF 97
Cdd:PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE-GEDISTLKPE-----IYRQQV-SYCAQT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 HYLLPEfSAIENVMMPGMIavsqgrspsvishRELYEKAEKLLDELALYARKNH---KS-GELSGGEQQRVAVARALLLE 173
Cdd:PRK10247 90 PTLFGD-TVYDNLIFPWQI-------------RNQQPDPAIFLDDLERFALPDTiltKNiAELSGGEKQRISLIRNLQFM 155
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1901209871 174 PNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
22-214 |
8.65e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.80 E-value: 8.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGELAVFRNRV------IGFIF 95
Cdd:PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI------------DGQEMRFASTTaalaagVAIIY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 96 QFHYLLPEFSAIENVMMpgmiavsqGRSPS---VISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLL 172
Cdd:PRK11288 86 QELHLVPEMTVAENLYL--------GQLPHkggIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1901209871 173 EPNVVLADEPTGNLDTKTGEELFKLlmdINQKR--GITFIIVTH 214
Cdd:PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRV---IRELRaeGRVILYVSH 198
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-233 |
1.03e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 77.08 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLeKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSN 80
Cdd:PRK13650 1 MSNIIEVKNL-TFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII------IDGDLLTE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRnRVIGFIFQfhyllpefsAIENVMMPGMIA--VSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSG 158
Cdd:PRK13650 74 ENVWDIR-HKIGMVFQ---------NPDNQFVGATVEddVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
20-215 |
1.11e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 77.13 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDIDPFSLSNG----ELAVFRNRvIGFIF 95
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV------TVDDITITHKtkdkYIRPVRKR-IGMVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 96 QFhyllPEFSAIENVMMPGMIAvsqGRSPSVISHRELYEKAEKLLDELALYARKNHKSG-ELSGGEQQRVAVARALLLEP 174
Cdd:PRK13646 92 QF----PESQLFEDTVEREIIF---GPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPfQMSGGQMRKIAIVSILAMNP 164
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1901209871 175 NVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK13646 165 DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-214 |
1.38e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.05 E-value: 1.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI------GTLDkptsGKVLYkidkdid 74
Cdd:PRK13549 2 MEYLLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLsgvyphGTYE----GEIIF------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 75 pfslsNGELAVFRN------RVIGFIFQFHYLLPEFSAIENVMMpgmiavsqGRSPS---VISHRELYEKAEKLLDELAL 145
Cdd:PRK13549 67 -----EGEELQASNirdterAGIAIIHQELALVKELSVLENIFL--------GNEITpggIMDYDAMYLRAQKLLAQLKL 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 146 YARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTH 214
Cdd:PRK13549 134 DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISH 201
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
17-224 |
1.41e-16 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 77.25 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 17 PAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDKptSGKVlyKID----KDIDPFSLSNGELAVFRNRVI 91
Cdd:COG4170 16 PQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAIcGITKD--NWHV--TADrfrwNGIDLLKLSPRERRKIIGREI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 92 GFIFQ--FHYLLPEFSAIENVM--MPGmiavSQGRSPSVISHRELYEKAEKLLDELALyarKNHKS------GELSGGEQ 161
Cdd:COG4170 92 AMIFQepSSCLDPSAKIGDQLIeaIPS----WTFKGKWWQRFKWRKKRAIELLHRVGI---KDHKDimnsypHELTEGEC 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHR 224
Cdd:COG4170 165 QKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDlESISQWADT 228
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-234 |
2.01e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 78.13 E-value: 2.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVegleksfYMPAGELKVLKgIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsn 80
Cdd:TIGR01257 931 VKNLVKI-------FEPSGRPAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG-GKDIET----- 996
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gELAVFRnRVIGFIFQFHYLLPEFSAIENVMMPGMIavsQGRSpsvisHRELYEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:TIGR01257 997 -NLDAVR-QSLGMCPQHNILFHHLTVAEHILFYAQL---KGRS-----WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGM 1066
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMdiNQKRGITFIIVTHN-ESLSKRCHRTLEMVDGRLY 234
Cdd:TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL--KYRSGRTIIMSTHHmDEADLLGDRIAIISQGRLY 1139
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-233 |
2.65e-16 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 76.98 E-value: 2.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSfympagelKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFS---- 77
Cdd:COG1129 254 EVVLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLD-GKPVRIRSprda 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 78 LSNGelavfrnrvIGfifqfhyLLPE----------FSAIENVMMPGMIAVSQGRspsVISHRELYEKAEKLLDELAL-Y 146
Cdd:COG1129 325 IRAG---------IA-------YVPEdrkgeglvldLSIRENITLASLDRLSRGG---LLDRRRERALAEEYIKRLRIkT 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 147 ARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVT--HNESLSKrCHR 224
Cdd:COG1129 386 PSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA-AEGKAVIVISseLPELLGL-SDR 463
|
....*....
gi 1901209871 225 TLEMVDGRL 233
Cdd:COG1129 464 ILVMREGRI 472
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
20-214 |
3.31e-16 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 74.88 E-value: 3.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRNRvIGFIFQfhy 99
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL------LDGVDIRDLNLRWLRSQ-IGLVSQ--- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 100 llpefsaiENVMMPGMIA--VSQGRSPSVISHRE-------LYEKAEKLLDelALYARKNHKSGELSGGEQQRVAVARAL 170
Cdd:cd03249 85 --------EPVLFDGTIAenIRYGKPDATDEEVEeaakkanIHDFIMSLPD--GYDTLVGERGSQLSGGQKQRIAIARAL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1901209871 171 LLEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGITFIIVTH 214
Cdd:cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAH 196
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-215 |
3.80e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 75.53 E-value: 3.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPfslsngela 84
Cdd:COG4152 2 LELKGLTKRF----GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWD-GEPLDP--------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFifqfhylLPEfsaiENVMMPGMIAVSQ--------GRSPSVISHRelyekAEKLLDELALYARKNHKSGEL 156
Cdd:COG4152 68 EDRRR-IGY-------LPE----ERGLYPKMKVGEQlvylarlkGLSKAEAKRR-----ADEWLERLGLGDRANKKVEEL 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 157 SGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHN 215
Cdd:COG4152 131 SKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQ 188
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-215 |
5.32e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 74.77 E-value: 5.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLekSFYMPAGElKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlYKIDKDIDPFSLSN 80
Cdd:PRK13647 1 MDNIIEVEDL--HFRYKDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEKW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gelavFRNRViGFIFQFhyllPE---FSAI--ENVMMPgmiAVSQGRSPSvishrELYEKAEKLLDELALYARKNHKSGE 155
Cdd:PRK13647 77 -----VRSKV-GLVFQD----PDdqvFSSTvwDDVAFG---PVNMGLDKD-----EVERRVEEALKAVRMWDFRDKPPYH 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTHN 215
Cdd:PRK13647 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHD 197
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-224 |
6.27e-16 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 75.22 E-value: 6.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 4 LIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKP----TSGKVLYKidkDIDPFSLS 79
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDnwrvTADRMRFD---DIDLLRLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 80 NGElavfRNRVIG----FIFQ--FHYLLPEFSAIENVM--MPGMiaVSQGRSPSVISHRElyEKAEKLLDELALyarKNH 151
Cdd:PRK15093 80 PRE----RRKLVGhnvsMIFQepQSCLDPSERVGRQLMqnIPGW--TYKGRWWQRFGWRK--RRAIELLHRVGI---KDH 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 152 KSG------ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN-ESLSKRCHR 224
Cdd:PRK15093 149 KDAmrsfpyELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDlQMLSQWADK 228
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
20-218 |
8.84e-16 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 73.45 E-value: 8.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFL-HVIGTL-DKPTSGKVlykiDKDIDPFSlsngelavfrnrvigfifqf 97
Cdd:COG2401 42 ERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLrLLAGALkGTPVAGCV----DVPDNQFG-------------------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 hyllPEFSAIENVMMPGMIAvsqgrspsvishrelyEKAEKL----LDELALYARKNHksgELSGGEQQRVAVARALLLE 173
Cdd:COG2401 98 ----REASLIDAIGRKGDFK----------------DAVELLnavgLSDAVLWLRRFK---ELSTGQKFRFRLALLLAER 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1901209871 174 PNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESL 218
Cdd:COG2401 155 PKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDV 199
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
19-228 |
8.90e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 72.98 E-value: 8.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKDIDPfslsngelavfrnrviGFIFQFH 98
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP----------------DVAEACH 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 YL------LPEFSAIENVmmpGMIAVSQGRSPSVIshrelyekaEKLLDELALYARKNHKSGELSGGEQQRVAVARALLL 172
Cdd:PRK13539 77 YLghrnamKPALTVAENL---EFWAAFLGGEELDI---------AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 173 EPNVVLADEPTGNLDtKTGEELFKLLMDINQKRGITFIIVTHNeSLSKRCHRTLEM 228
Cdd:PRK13539 145 NRPIWILDEPTAALD-AAAVALFAELIRAHLAQGGIVIAATHI-PLGLPGARELDL 198
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
20-233 |
1.27e-15 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 75.30 E-value: 1.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDKPT-SGKVLykidkdidpfsLSNGELAVFRNRVIGFIFQF 97
Cdd:PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALaGRIQGNNfTGTIL-----------ANNRKPTKQILKRTGFVTQD 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 HYLLPEFSAIENvmmpgMIAVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGE-----LSGGEQQRVAVARALLL 172
Cdd:PLN03211 149 DILYPHLTVRET-----LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLI 223
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 173 EPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESlskrcHRTLEMVDGRL 233
Cdd:PLN03211 224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPS-----SRVYQMFDSVL 278
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
13-233 |
1.39e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 73.67 E-value: 1.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELkvLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdidpfsLSNGELAVFRNRVig 92
Cdd:PRK10575 18 SFRVPGRTL--LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL-----------LDAQPLESWSSKA-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLLPEFSAIENVMMPGMIAVsqGRSPSvisH-------RELYEKAEKLLDELALYARKNHKSGELSGGEQQRVA 165
Cdd:PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAI--GRYPW---HgalgrfgAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 166 VARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGRL 233
Cdd:PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARyCDYLVALRGGEM 226
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
5-232 |
1.58e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 74.48 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdIDPFSLSNGELA 84
Cdd:PRK13536 42 IDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV-----LGVPVPARARLA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfRNRvIGFIFQFHYLLPEFSAIENVMMPGMIAVsqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRV 164
Cdd:PRK13536 113 --RAR-IGVVPQFDNLDLEFTVRENLLVFGRYFG--------MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTG----EELFKLLmdinqKRGITFIIVTH-NESLSKRCHRTLEMVDGR 232
Cdd:PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARhliwERLRSLL-----ARGKTILLTTHfMEEAERLCDRLCVLEAGR 249
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
22-233 |
7.38e-15 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 71.08 E-value: 7.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKST-FLHVIGTLDKpTSGKVLYKiDKDIDPFSLSNGELavfrnRVIGFIFQFHYL 100
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTtFYMVVGIVPR-DAGNIIID-DEDISLLPLHARAR-----RGIGYLPQEASI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 LPEFSAIENVMmpgmiAVSQGRSPSVISHRElyEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:PRK10895 90 FRRLSVYDNLM-----AVLQIRDDLSAEQRE--DRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHN--ESLSKrCHRTLEMVDGRL 233
Cdd:PRK10895 163 EPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNvrETLAV-CERAYIVSQGHL 215
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-200 |
8.21e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 72.75 E-value: 8.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEksfYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLsng 81
Cdd:COG3845 255 EVVLEVENLS---VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLD-GEDITGLSP--- 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 82 elAVFRNRVIGFI---FQFHYLLPEFSAIENvmmpgMIAVSQGRSP----SVISHRELYEKAEKLLDELAL-YARKNHKS 153
Cdd:COG3845 328 --RERRRLGVAYIpedRLGRGLVPDMSVAEN-----LILGRYRRPPfsrgGFLDRKAIRAFAEELIEEFDVrTPGPDTPA 400
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMD 200
Cdd:COG3845 401 RSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLE 447
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
13-232 |
1.90e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 69.95 E-value: 1.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIG 92
Cdd:cd03251 7 TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL------IDGHDVRDYTLASLR-RQIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLlpeFS-AIENVMMPGMIAVSQGRSPSVISHRELYEKAEKLldELALYARKNHKSGELSGGEQQRVAVARALL 171
Cdd:cd03251 80 LVSQDVFL---FNdTVAENIAYGRPGATREEVEEAARAANAHEFIMEL--PEGYDTVIGERGVKLSGGQRQRIAIARALL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 172 LEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGR 232
Cdd:cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNR--TTFVIAHRLSTIENADRIVVLEDGK 213
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
19-214 |
2.12e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 69.44 E-value: 2.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdidpfsLSNGELAVFRN---RVIGFIF 95
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL-----------LNGGPLDFQRDsiaRGLLYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 96 QFHYLLPEFSAIENVmmpgmiavsqgRSPSVISHRELYEKAeklLDELALYARKNHKSGELSGGEQQRVAVARALLLEPN 175
Cdd:cd03231 80 HAPGIKTTLSVLENL-----------RFWHADHSDEQVEEA---LARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145
|
170 180 190
....*....|....*....|....*....|....*....
gi 1901209871 176 VVLADEPTGNLDtKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:cd03231 146 LWILDEPTTALD-KAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
19-233 |
2.54e-14 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 70.02 E-value: 2.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlYKIDKDIDPFSlsNGELAvfrnRVIGFIFQfh 98
Cdd:PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYA--SKEVA----RRIGLLAQ-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 yllpefsaieNVMMPGMIAV----SQGRSPsvisHRELYEKAEKLlDELALyARKNHKSG----------ELSGGEQQRV 164
Cdd:PRK10253 89 ----------NATTPGDITVqelvARGRYP----HQPLFTRWRKE-DEEAV-TKAMQATGithladqsvdTLSGGQRQRA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 165 AVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNesLSKRCHRTLEMV---DGRL 233
Cdd:PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD--LNQACRYASHLIalrEGKI 222
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-233 |
2.69e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 70.12 E-value: 2.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSfYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKIDKDidpfSLSN 80
Cdd:PRK13642 1 MNKILEVENLVFK-YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV--KIDGE----LLTA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRnRVIGFIFQFHYLLPEFSAIENVMMPGMiaVSQGrspsvISHRELYEKAEKLLDELALYARKNHKSGELSGGE 160
Cdd:PRK13642 74 ENVWNLR-RKIGMVFQNPDNQFVGATVEDDVAFGM--ENQG-----IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 161 QQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK13642 146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEI 218
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
24-233 |
3.81e-14 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 69.48 E-value: 3.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLdkPTSGKVLYKiDKDIDPFSLSngELAVFRNrvigfifqfhYL-- 100
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMaGLL--PGQGEILLN-GRPLSDWSAA--ELARHRA----------YLsq 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 --LPEFsaienvMMPG--MIAVSQGRSPSVishrelyEKAEKLLDELA-------LYARK-NHksgeLSGGEQQRVAVAR 168
Cdd:COG4138 77 qqSPPF------AMPVfqYLALHQPAGASS-------EAVEQLLAQLAealgledKLSRPlTQ----LSGGEWQRVRLAA 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 169 ALL-------LEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVTH--NESLsKRCHRTLEMVDGRL 233
Cdd:COG4138 140 VLLqvwptinPEGQLLLLDEPMNSLDVAQQAALDRLLRELCQ-QGITVVMSSHdlNHTL-RHADRVWLLKQGKL 211
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-222 |
4.39e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 70.12 E-value: 4.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFYMP---AGELKVLKG--------IDAV----F--NEAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVl 66
Cdd:COG4586 2 IEVENLSKTYRVYekePGLKGALKGlfrreyreVEAVddisFtiEPGEIVGFIGPNGAGKSTTIKMLtGIL-VPTSGEV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 67 yKIDkDIDPFslsngelavfRNRV-----IGFIF----QFHYLLPefsAIENVMMpgmiavsqgrspsvisHRELYE--- 134
Cdd:COG4586 80 -RVL-GYVPF----------KRRKefarrIGVVFgqrsQLWWDLP---AIDSFRL----------------LKAIYRipd 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 135 -KAEKLLDELA--------LY--ARKnhksgeLSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQ 203
Cdd:COG4586 129 aEYKKRLDELVelldlgelLDtpVRQ------LSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNR 202
|
250 260
....*....|....*....|...
gi 1901209871 204 KRGITFIIVTHN----ESLSKRC 222
Cdd:COG4586 203 ERGTTILLTSHDmddiEALCDRV 225
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-233 |
6.31e-14 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 68.96 E-value: 6.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSfymPAGELkvLKGIDAVFNEAEVVGIVGASGVGKS-TFLHVIGTLD---KPTSGKVLykidkdIDPF 76
Cdd:PRK10418 1 MPQQIELRNIALQ---AAQPL--VHGVSLTLQRGRVLALVGGSGSGKSlTCAAALGILPagvRQTAGRVL------LDGK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 77 SLSNGELavfRNRVIGFIFQ-----FHYLLPEFS-AIENVMMPGMIAVSQgRSPSVISHRELyEKAEKLLDelaLYARkn 150
Cdd:PRK10418 70 PVAPCAL---RGRKIATIMQnprsaFNPLHTMHThARETCLALGKPADDA-TLTAALEAVGL-ENAARVLK---LYPF-- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 151 hksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRC-HRTLEMV 229
Cdd:PRK10418 140 ----EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLaDDVAVMS 215
|
....
gi 1901209871 230 DGRL 233
Cdd:PRK10418 216 HGRI 219
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-231 |
7.11e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 70.08 E-value: 7.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDIDPFSLSN 80
Cdd:PRK15439 8 APPLLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL------EIGGNPCAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAVFRNRVIGFIFQFHYLLPEFSAIENVM--MPGmiavsqgrspsvisHRELYEKAEKLLDELALYARKNHKSGELSG 158
Cdd:PRK15439 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILfgLPK--------------RQASMQKMKQLLAALGCQLDLDSSAGSLEV 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 159 GEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELF-KLLMDINQKRGITFIivTHN-ESLSKRCHRTLEMVDG 231
Cdd:PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFsRIRELLAQGVGIVFI--SHKlPEIRQLADRISVMRDG 216
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-215 |
7.69e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 70.27 E-value: 7.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKS-TFLHVIGTLDKP----TSGKVLY--KIDKDID 74
Cdd:PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAgglvQCDKMLLrrRSRQVIE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 75 PFSLSNGELAVFRNRVIGFIFQ--FHYLLPEFSAIENVMMPgmIAVSQGrspsvISHRELYEKAEKLLDEL------ALY 146
Cdd:PRK10261 90 LSEQSAAQMRHVRGADMAMIFQepMTSLNPVFTVGEQIAES--IRLHQG-----ASREEAMVEAKRMLDQVripeaqTIL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 147 ARKNHksgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK10261 163 SRYPH---QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
13-215 |
1.25e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 69.47 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFSLSNgelavFRNRvIG 92
Cdd:PRK11160 345 SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN-GQPIADYSEAA-----LRQA-IS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLlpeFSAI--ENVMMPgmiavsqgrSPSVISHR--ELYEKA--EKLLDE---LALYArknhksGE----LSGG 159
Cdd:PRK11160 418 VVSQRVHL---FSATlrDNLLLA---------APNASDEAliEVLQQVglEKLLEDdkgLNAWL------GEggrqLSGG 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHN 215
Cdd:PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHR 533
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
22-214 |
1.29e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 69.19 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLhvigtldkptsgKVLYKIDKDIdpfslsNGELAVFRNRVIGFIFQFHYLL 101
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVDKDF------NGEARPQPGIKVGYLPQEPQLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEFSAIENVMMpGM--------------------------IAVSQGRSPSVISHRELYEKAEKLldELALYARK----NH 151
Cdd:TIGR03719 81 PTKTVRENVEE-GVaeikdaldrfneisakyaepdadfdkLAAEQAELQEIIDAADAWDLDSQL--EIAMDALRcppwDA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 152 KSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInqkRGiTFIIVTH 214
Cdd:TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEY---PG-TVVAVTH 216
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
11-187 |
1.33e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.82 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 11 EKSFYMPAGELKVLKGidaVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGkvlyKIDKDIDPFSLSNGEL-AVFRNR 89
Cdd:cd03237 5 TMKKTLGEFTLEVEGG---SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG----DIEIELDTVSYKPQYIkADYEGT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 90 VIGFIF---QFHYLLPEFsaIENVMMPGMIavsqgrspsvishrelyekaEKLLDELALyarknhksgELSGGEQQRVAV 166
Cdd:cd03237 78 VRDLLSsitKDFYTHPYF--KTEIAKPLQI--------------------EQILDREVP---------ELSGGELQRVAI 126
|
170 180
....*....|....*....|.
gi 1901209871 167 ARALLLEPNVVLADEPTGNLD 187
Cdd:cd03237 127 AACLSKDADIYLLDEPSAYLD 147
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
6-233 |
1.39e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 69.37 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 6 KVEGLEKSFYMPA-GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNgela 84
Cdd:TIGR00958 478 LIEFQDVSFSYPNrPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL------LDGVPLVQ---- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 vfrnrvigfiFQFHYLLpefsaiENVMMPGMIAVSQGRSpsvISHRELYEKAEKLLDELALYARKNH------------- 151
Cdd:TIGR00958 548 ----------YDHHYLH------RQVALVGQEPVLFSGS---VRENIAYGLTDTPDEEIMAAAKAANahdfimefpngyd 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 152 -----KSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTktgeELFKLLMDINQKRGITFIIVTHNESLSKRCHRTL 226
Cdd:TIGR00958 609 tevgeKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESRSRASRTVLLIAHRLSTVERADQIL 684
|
....*..
gi 1901209871 227 EMVDGRL 233
Cdd:TIGR00958 685 VLKKGSV 691
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
5-232 |
1.77e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 66.72 E-value: 1.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELK---VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDKpTSGKVlykidkdidpfslsn 80
Cdd:cd03250 1 ISVEDA--SFTWDSGEQEtsfTLKDINLEVPKGELVAIVGPVGSGKSSLLSALlGELEK-LSGSV--------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 gelavFRNRVIGFIFQFHYLLPEfSAIENVMMpgmiavsqGrspSVISHrELYEKAEK---LLDELALYARKNHKS-GE- 155
Cdd:cd03250 63 -----SVPGSIAYVSQEPWIQNG-TIRENILF--------G---KPFDE-ERYEKVIKacaLEPDLEILPDGDLTEiGEk 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 156 ---LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFK-----LLMDinqkrGITFIIVTHNESLSKRCHRTLE 227
Cdd:cd03250 125 ginLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEncilgLLLN-----NKTRILVTHQLQLLPHADQIVV 199
|
....*
gi 1901209871 228 MVDGR 232
Cdd:cd03250 200 LDNGR 204
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
35-233 |
8.43e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 66.91 E-value: 8.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 35 EVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIGFIFQfHYLLPEFSAIENVMMpg 114
Cdd:PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL------IDGTDIRTVTRASLR-RNIAVVFQ-DAGLFNRSIEDNIRV-- 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 115 miavsqGRSPSviSHRELYEKAEKLlDELALYARKNHK----SGE----LSGGEQQRVAVARALLLEPNVVLADEPTGNL 186
Cdd:PRK13657 432 ------GRPDA--TDEEMRAAAERA-QAHDFIERKPDGydtvVGErgrqLSGGERQRLAIARALLKDPPILILDEATSAL 502
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1901209871 187 DTKTgEELFKLLMDINQKRGITFIIvTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK13657 503 DVET-EAKVKAALDELMKGRTTFII-AHRLSTVRNADRILVFDNGRV 547
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-233 |
1.40e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 64.36 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympAGEL-KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGEL 83
Cdd:cd03369 7 IEVENLSVRY---APDLpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE------IDGIDISTIPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 84 AVFRNRvIGFIFQFHYLLpefsaienvmmpgmiavsqgrSPSVISHRELYEKaeklLDELALYARKNHKSG--ELSGGEQ 161
Cdd:cd03369 78 EDLRSS-LTIIPQDPTLF---------------------SGTIRSNLDPFDE----YSDEEIYGALRVSEGglNLSQGQR 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDinQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:cd03369 132 QLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTIIDYDKILVMDAGEV 201
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
37-233 |
1.88e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 66.02 E-value: 1.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 37 VGIVGASGVGKSTFLHVI-GTLdkPTSGKVLykidkdIDPFSLSNGELAVFRnRVIGFIFQfHYLLPEFSAIENVMMpGM 115
Cdd:PRK11174 379 IALVGPSGAGKTSLLNALlGFL--PYQGSLK------INGIELRELDPESWR-KHLSWVGQ-NPQLPHGTLRDNVLL-GN 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 116 IAVSQGRSPSVISHRELYEKAEKLLDELAlYARKNHKSGeLSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTgEELf 195
Cdd:PRK11174 448 PDASDEQLQQALENAWVSEFLPLLPQGLD-TPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS-EQL- 523
|
170 180 190
....*....|....*....|....*....|....*....
gi 1901209871 196 kLLMDINQ-KRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK11174 524 -VMQALNAaSRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-233 |
2.57e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 65.58 E-value: 2.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKiDKDIDPFS----LSNGELAVFRNRV-IGFifq 96
Cdd:PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLN-GKDISPRSpldaVKKGMAYITESRRdNGF--- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 fhylLPEFSAIENVMMPGMIAVSQ-GRSPSVISHRELYEKAEKLLDELALY-ARKNHKSGELSGGEQQRVAVARALLLEP 174
Cdd:PRK09700 353 ----FPNFSIAQNMAISRSLKDGGyKGAMGLFHEVDEQRTAENQRELLALKcHSVNQNITELSGGNQQKVLISKWLCCCP 428
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 175 NVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHN--ESLSKrCHRTLEMVDGRL 233
Cdd:PRK09700 429 EVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSElpEIITV-CDRIAVFCEGRL 487
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
22-218 |
2.67e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 64.64 E-value: 2.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkdIDPFSLSNGELAVFRNRViGFIFQFhyll 101
Cdd:PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQ----GKPLDYSKRGLLALRQQV-ATVFQD---- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PEfsaienvmmpGMIAVSQGRSPSVISHREL----YEKAEKLLDELALYARKNHKSGE---LSGGEQQRVAVARALLLEP 174
Cdd:PRK13638 86 PE----------QQIFYTDIDSDIAFSLRNLgvpeAEITRRVDEALTLVDAQHFRHQPiqcLSHGQKKRVAIAGALVLQA 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1901209871 175 NVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESL 218
Cdd:PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDL 198
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
2-214 |
3.21e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 65.19 E-value: 3.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFymPAGELKVLKGidaVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSG------KVLYK---IDKD 72
Cdd:COG1245 339 ETLVEYPDLTKSY--GGFSLEVEGG---EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGevdedlKISYKpqyISPD 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 73 IDpfslsnGELAVFRNRVIGFIFQFHYLLPEfsaienVMMPGMIavsqgrspsvishrelyekaEKLLDelalyarKNHK 152
Cdd:COG1245 414 YD------GTVEEFLRSANTDDFGSSYYKTE------IIKPLGL--------------------EKLLD-------KNVK 454
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 153 sgELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTH 214
Cdd:COG1245 455 --DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDH 514
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
32-187 |
3.95e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 64.83 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 32 NEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKDIDPfslsngelavfrnrvigfifqfHYLLPEFSA-IENV 110
Cdd:PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKP----------------------QYIKPDYDGtVEDL 420
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 111 MMpgMIAVSQGRSpsvishrelYEKAEkLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLD 187
Cdd:PRK13409 421 LR--SITDDLGSS---------YYKSE-IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-214 |
4.20e-12 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 63.28 E-value: 4.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSfYMPAGELkVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykIDkDIDPFSLSngeLA 84
Cdd:cd03244 3 IEFKNVSLR-YRPNLPP-VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL--ID-GVDISKIG---LH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRvIGFIFQfhyllpefsaiENVMMPGMIavsqgRS---P-SVISHRELYEKAEK-LLDEL------ALYARKNHKS 153
Cdd:cd03244 75 DLRSR-ISIIPQ-----------DPVLFSGTI-----RSnldPfGEYSDEELWQALERvGLKEFveslpgGLDTVVEEGG 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMdiNQKRGITFIIVTH 214
Cdd:cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAH 196
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
19-233 |
5.71e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 62.54 E-value: 5.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLD-KPTSGKVLYKiDKDIdpFSLSNGELAvfrNRVIGFIFQ 96
Cdd:cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImGHPKyEVTEGEILFK-GEDI--TDLPPEERA---RLGIFLAFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 FHyllPEFSAIENVMMPgmiavsqgrspsvishRELYEKaeklldelalyarknhksgeLSGGEQQRVAVARALLLEPNV 176
Cdd:cd03217 85 YP---PEIPGVKNADFL----------------RYVNEG--------------------FSGGEKKRNEILQLLLLEPDL 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 177 VLADEPTGNLDTKTGEELFKLLMDINqKRGITFIIVTHNESLSKRCH--RTLEMVDGRL 233
Cdd:cd03217 126 AILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIKpdRVHVLYDGRI 183
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
155-232 |
6.36e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 64.34 E-value: 6.36e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 155 ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR-CHRTLEMVDGR 232
Cdd:PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKlADRVAVMQNGR 234
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
156-221 |
1.42e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.51 E-value: 1.42e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKR 221
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR 1424
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
29-234 |
2.60e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 61.49 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 29 AVFNEAEVVGIVGASGVGKSTFLHVI-GTLdkPTSGKVLYKiDKDIDPFSLSngELAVFRnrviGFIFQ----------F 97
Cdd:PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMaGLL--PGSGSIQFA-GQPLEAWSAA--ELARHR----AYLSQqqtppfampvF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 HYLlpefsaienvmmpgmiAVSQGRS-PSVISHRELYEKAE--KLLDELalyarknHKS-GELSGGEQQRVAVARALL-- 171
Cdd:PRK03695 88 QYL----------------TLHQPDKtRTEAVASALNEVAEalGLDDKL-------GRSvNQLSGGEWQRVRLAAVVLqv 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 172 ---LEPN--VVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTH--NESLsKRCHRTLEMVDGRLY 234
Cdd:PRK03695 145 wpdINPAgqLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHdlNHTL-RHADRVWLLKQGKLL 212
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
27-214 |
3.30e-11 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 62.22 E-value: 3.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 27 IDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkdidpfSLSNGE-LAVFRNRvigfifQFHYllPEFS 105
Cdd:PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-----------SLDPNErLGKLRQD------QFAF--EEFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 106 AIENVMM--PGMIAVSQGRSpSVISHRELYE----KAEKLLDELALY------ARknhkSGELSGG-----EQQ------ 162
Cdd:PRK15064 81 VLDTVIMghTELWEVKQERD-RIYALPEMSEedgmKVADLEVKFAEMdgytaeAR----AGELLLGvgipeEQHyglmse 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 163 -------RVAVARALLLEPNVVLADEPTGNLDTKTgeelFKLLMDINQKRGITFIIVTH 214
Cdd:PRK15064 156 vapgwklRVLLAQALFSNPDILLLDEPTNNLDINT----IRWLEDVLNERNSTMIIISH 210
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
13-233 |
4.04e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 61.35 E-value: 4.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSgkvLYKIDKDIDPFSLSNGELAVFRNRViG 92
Cdd:PRK13640 12 SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD---NPNSKITVDGITLTAKTVWDIREKV-G 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQfhyllpefsAIENVMMPGMIA--VSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARAL 170
Cdd:PRK13640 88 IVFQ---------NPDNQFVGATVGddVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 171 LLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKL 221
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-190 |
5.65e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 61.49 E-value: 5.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGkvlykidkdidpfSLSNGELA 84
Cdd:TIGR03719 323 IEAENLTKAF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-------------TIEIGETV 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VfrnrvIGFIFQFHYLL-PEFSAIEnvmmpgmiAVSQGRSPSVISHRELYEKAeklldelalY-ARKNHKS-------GE 155
Cdd:TIGR03719 386 K-----LAYVDQSRDALdPNKTVWE--------EISGGLDIIKLGKREIPSRA---------YvGRFNFKGsdqqkkvGQ 443
|
170 180 190
....*....|....*....|....*....|....*
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKT 190
Cdd:TIGR03719 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
19-232 |
6.57e-11 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 60.08 E-value: 6.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLD-KPTSGKVLYKiDKDIdpFSLSNGELAvfrNRVIGFIFQ 96
Cdd:COG0396 11 EGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLmGHPKyEVTSGSILLD-GEDI--LELSPDERA---RAGIFLAFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 FHyllPEFSAI--ENVMMPGMIAVSQGRSPSVISHRELYEKAEKL-LDELALYARKNhksGELSGGEQQRVAVARALLLE 173
Cdd:COG0396 85 YP---VEIPGVsvSNFLRTALNARRGEELSAREFLKLLKEKMKELgLDEDFLDRYVN---EGFSGGEKKRNEILQMLLLE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 174 PNVVLADEPTGNLDTktgeELFKLLMD-INQ--KRGITFIIVTHNESLSK--RCHRTLEMVDGR 232
Cdd:COG0396 159 PKLAILDETDSGLDI----DALRIVAEgVNKlrSPDRGILIITHYQRILDyiKPDFVHVLVDGR 218
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
23-234 |
8.64e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.46 E-value: 8.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDkPTSGKVLYkidkdidpfslsNGElavfrnrvIGFIFQFHYLL 101
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMImGELE-PSEGKIKH------------SGR--------ISFSPQTSWIM 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 102 PefSAIENVMMPGmIAVSQGRSPSVIshrelyeKAEKLLDELALYARKNHKS-GE----LSGGEQQRVAVARALLLEPNV 176
Cdd:TIGR01271 500 P--GTIKDNIIFG-LSYDEYRYTSVI-------KACQLEEDIALFPEKDKTVlGEggitLSGGQRARISLARAVYKDADL 569
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 177 VLADEPTGNLDTKTGEELF-----KLLmdINQKRgitfIIVTHNESLSKRCHRTLEMVDGRLY 234
Cdd:TIGR01271 570 YLLDSPFTHLDVVTEKEIFesclcKLM--SNKTR----ILVTSKLEHLKKADKILLLHEGVCY 626
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
33-216 |
1.05e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 60.57 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 33 EAEVVGIVGASGVGKSTFLHVI------GTLDkptsGKVLYkidkdidpfslsNGELAVFRN------RVIGFIFQFHYL 100
Cdd:NF040905 26 EGEIHALCGENGAGKSTLMKVLsgvyphGSYE----GEILF------------DGEVCRFKDirdseaLGIVIIHQELAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 LPEFSAIENVMMPGMIAVSqgrspSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:NF040905 90 IPYLSIAENIFLGNERAKR-----GVIDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILD 164
|
170 180 190
....*....|....*....|....*....|....*...
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDInQKRGITFIIVTH--NE 216
Cdd:NF040905 165 EPTAALNEEDSAALLDLLLEL-KAQGITSIIISHklNE 201
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
33-187 |
1.11e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 60.59 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 33 EAEVVGIVGASGVGKSTFLHVI-GTLdKPTSGKVLYKIDKD--IDPFS----------LSNGELavfrnRVIGFIfQFHY 99
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILsGEL-IPNLGDYEEEPSWDevLKRFRgtelqnyfkkLYNGEI-----KVVHKP-QYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 100 LLPEfsaienvmmpgmiaVSQGRSpsvishRELYEKA------EKLLDELALYARKNHKSGELSGGEQQRVAVARALLLE 173
Cdd:PRK13409 171 LIPK--------------VFKGKV------RELLKKVdergklDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230
|
170
....*....|....
gi 1901209871 174 PNVVLADEPTGNLD 187
Cdd:PRK13409 231 ADFYFFDEPTSYLD 244
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
33-187 |
1.26e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 60.57 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 33 EAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKD--IDPFS----------LSNGELavfrnRVIGFIfQFHYL 100
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEPSWDevLKRFRgtelqdyfkkLANGEI-----KVAHKP-QYVDL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 101 LPEfsaienvmmpgmiaVSQGRSpsvishRELYEKA------EKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEP 174
Cdd:COG1245 172 IPK--------------VFKGTV------RELLEKVdergklDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDA 231
|
170
....*....|...
gi 1901209871 175 NVVLADEPTGNLD 187
Cdd:COG1245 232 DFYFFDEPSSYLD 244
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
33-221 |
2.21e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 59.96 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 33 EAEVVGIVGASGVGKSTFLHVIG---TLDkptSGKVLYKIDkdidpfslsngeLAVFR------NRVIGFIFQFhyllpe 103
Cdd:PRK11147 28 DNERVCLVGRNGAGKSTLMKILNgevLLD---DGRIIYEQD------------LIVARlqqdppRNVEGTVYDF------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 104 fsaienvmmpgmiaVSQG--------RSPSVISHRELYEKAEKLLDELA-LYARKNHKSG-------------------- 154
Cdd:PRK11147 87 --------------VAEGieeqaeylKRYHDISHLVETDPSEKNLNELAkLQEQLDHHNLwqlenrinevlaqlgldpda 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 155 ---ELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGITFIivTHNESLSKR 221
Cdd:PRK11147 153 alsSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFI--SHDRSFIRN 218
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-215 |
3.18e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 58.20 E-value: 3.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsN 80
Cdd:PRK09544 1 MTSLVSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR------------N 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 81 GELAvfrnrvIGFIFQFHYLLPEFS-AIENVMM--PGMiavsqgRSPSVISHRELYeKAEKLLDelalyarknHKSGELS 157
Cdd:PRK09544 65 GKLR------IGYVPQKLYLDTTLPlTVNRFLRlrPGT------KKEDILPALKRV-QAGHLID---------APMQKLS 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHN 215
Cdd:PRK09544 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
26-213 |
7.93e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 58.09 E-value: 7.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 26 GIDAV---FNEAEVVGIVGASGVGKSTFLHVI-GTLDKpTSGKVLYKiDKDIDPFS----LSNGELAVFRNR-----VIG 92
Cdd:PRK10762 267 GVNDVsftLRKGEILGVSGLMGAGRTELMKVLyGALPR-TSGYVTLD-GHEVVTRSpqdgLANGIVYISEDRkrdglVLG 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FifqfhyllpefSAIENVMMPGMIAVSqgRSPSVISHrelyeKAEKLL--DELALYARK----NHKSGELSGGEQQRVAV 166
Cdd:PRK10762 345 M-----------SVKENMSLTALRYFS--RAGGSLKH-----ADEQQAvsDFIRLFNIKtpsmEQAIGLLSGGNQQKVAI 406
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1901209871 167 ARALLLEPNVVLADEPTGNLDTKTGEELFKLlmdINQ--KRGITFIIVT 213
Cdd:PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQL---INQfkAEGLSIILVS 452
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
7-233 |
1.53e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 57.21 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 7 VEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkdidpfslsngelavf 86
Cdd:PRK15064 322 VENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS------------------ 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 87 RNRVIGFIFQFHYllPEFSAIENVM--MpgmiavSQGRSPSvisHRELYEKAE--KLL---DElalyARKNHKSgeLSGG 159
Cdd:PRK15064 380 ENANIGYYAQDHA--YDFENDLTLFdwM------SQWRQEG---DDEQAVRGTlgRLLfsqDD----IKKSVKV--LSGG 442
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901209871 160 EQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFkllMDINQKRGiTFIIVTHN-ESLSKRCHRTLEMVDGRL 233
Cdd:PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN---MALEKYEG-TLIFVSHDrEFVSSLATRIIEITPDGV 513
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1-217 |
1.59e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 57.73 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 1 MKELIKVEGLEKSF-YMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKID---KDID-- 74
Cdd:PTZ00265 377 LKDIKKIQFKNVRFhYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDShnlKDINlk 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 75 ----PFSLSNGELAVFRNRVIGFIFQFHYLLPEFSAIENVMMPGMIAvSQGRSPSVISHRELYEKAEKLL------DELa 144
Cdd:PTZ00265 457 wwrsKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND-SQENKNKRNSCRAKCAGDLNDMsnttdsNEL- 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 145 LYARKNHK----------------------------------SGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKT 190
Cdd:PTZ00265 535 IEMRKNYQtikdsevvdvskkvlihdfvsalpdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
|
250 260
....*....|....*....|....*..
gi 1901209871 191 GEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLS 641
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
28-231 |
1.80e-09 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 56.43 E-value: 1.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 28 DAVFN--EAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfsLSNGELAVFRNRVIGFIFQFHYLLPEFS 105
Cdd:PRK15056 25 DASFTvpGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI----------LGQPTRQALQKNLVAYVPQSEEVDWSFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 106 A-IENVMMPGMIA-VSQGRSPSViSHRELYEKAEKLLDELALYARKnhkSGELSGGEQQRVAVARALLLEPNVVLADEPT 183
Cdd:PRK15056 95 VlVEDVVMMGRYGhMGWLRRAKK-RDRQIVTAALARVDMVEFRHRQ---IGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1901209871 184 GNLDTKTGEELFKLLMDInQKRGITFIIVTHN-ESLSKRCHRTLeMVDG 231
Cdd:PRK15056 171 TGVDVKTEARIISLLREL-RDEGKTMLVSTHNlGSVTEFCDYTV-MVKG 217
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
154-232 |
2.86e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 56.37 E-value: 2.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 154 GE----LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMV 229
Cdd:COG5265 489 GErglkLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGR--TTLVIAHRLSTIVDADEILVLE 566
|
...
gi 1901209871 230 DGR 232
Cdd:COG5265 567 AGR 569
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-233 |
4.02e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 55.90 E-value: 4.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 2 KELIKVEGLEKSFympaGELKVLKGIDAVFNEAEVVGIVGASGVGK---STFLHVIGtldkPTSGKVLYKidkdidpFSL 78
Cdd:NF000106 11 RNAVEVRGLVKHF----GEVKAVDGVDLDVREGTVLGVLGP*GAA**rgALPAHV*G----PDAGRRPWR-------F*T 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 79 SNGELAVFRnRVIGFIFQFHYLLPE-FSAIENVMMPGMIAVsqgrspsvISHRELYEKAEKLLDELALYARKNHKSGELS 157
Cdd:NF000106 76 WCANRRALR-RTIG*HRPVR*GRREsFSGRENLYMIGR*LD--------LSRKDARARADELLERFSLTEAAGRAAAKYS 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDInQKRGITFIIVTHNESLSKRCHRTLEMVD-GRL 233
Cdd:NF000106 147 GGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSM-VRDGATVLLTTQYMEEAEQLAHELTVIDrGRV 222
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
12-217 |
5.75e-09 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 55.49 E-value: 5.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 12 KSFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKidkdidPFSLSNGELAVFRNRvI 91
Cdd:PRK10789 319 RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFH------DIPLTKLQLDSWRSR-L 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 92 GFIFQFHYLLPEFSAienvmmpGMIAVsqGRsPSviSHRELYEKAEKLL----DELALYARKNHKSGE----LSGGEQQR 163
Cdd:PRK10789 392 AVVSQTPFLFSDTVA-------NNIAL--GR-PD--ATQQEIEHVARLAsvhdDILRLPQGYDTEVGErgvmLSGGQKQR 459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 164 VAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNES 217
Cdd:PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIISAHRLS 511
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
39-232 |
7.06e-09 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 55.53 E-value: 7.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 39 IVGASGVGKSTFLHVIG--------TLDKPTSGKVLYKIDKdidPFsLSNGELavfRNRVIgfifqfhylLPEfsAIENV 110
Cdd:TIGR00954 483 ICGPNGCGKSSLFRILGelwpvyggRLTKPAKGKLFYVPQR---PY-MTLGTL---RDQII---------YPD--SSEDM 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 111 MMPGMiavsqgrspsviSHRELyekaEKLLDELALYARKNHKSG---------ELSGGEQQRVAVARALLLEPNVVLADE 181
Cdd:TIGR00954 545 KRRGL------------SDKDL----EQILDNVQLTHILEREGGwsavqdwmdVLSGGEKQRIAMARLFYHKPQFAILDE 608
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 182 PTGNLDTKTGEELFKLLmdinQKRGITFIIVTHNESLSKRCHRTLEMvDGR 232
Cdd:TIGR00954 609 CTSAVSVDVEGYMYRLC----REFGITLFSVSHRKSLWKYHEYLLYM-DGR 654
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-190 |
8.44e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 55.12 E-value: 8.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLEK-----------SFYMPAGelkvlkGIdavfneaevVGIVGASGVGKSTFLHVIGTLDKPTSGKVlyKIdkdi 73
Cdd:PRK11819 325 IEAENLSKsfgdrlliddlSFSLPPG------GI---------VGIIGPNGAGKSTLFKMITGQEQPDSGTI--KI---- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 74 dpfslsnGELAVfrnrvIGFIFQFH-YLLPEFSAIEnvmmpgmiAVSQGRSPSVISHRELYEKAeklldelalY-ARKNH 151
Cdd:PRK11819 384 -------GETVK-----LAYVDQSRdALDPNKTVWE--------EISGGLDIIKVGNREIPSRA---------YvGRFNF 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1901209871 152 K-------SGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKT 190
Cdd:PRK11819 435 KggdqqkkVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
22-214 |
8.68e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 55.12 E-value: 8.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 22 KVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVL----YKI-----------DKDIdpfsLSNGELAVf 86
Cdd:PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARpapgIKVgylpqepqldpEKTV----RENVEEGV- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 87 rnrviGFIFQfhyLLPEFSAIENVMMPGM-----IAVSQGRSPSVISHRELYEKAEKLldELALYA-R---KNHKSGELS 157
Cdd:PRK11819 96 -----AEVKA---ALDRFNEIYAAYAEPDadfdaLAAEQGELQEIIDAADAWDLDSQL--EIAMDAlRcppWDAKVTKLS 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINqkrGiTFIIVTH 214
Cdd:PRK11819 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTH 218
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
13-233 |
9.04e-09 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 55.02 E-value: 9.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRNRViG 92
Cdd:PRK11176 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL------LDGHDLRDYTLASLRNQV-A 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLLpefsaieNVMMPGMIAVSQGRSPSvishRELYEKA----------EKLLDELALYARKNHKSgeLSGGEQQ 162
Cdd:PRK11176 421 LVSQNVHLF-------NDTIANNIAYARTEQYS----REQIEEAarmayamdfiNKMDNGLDTVIGENGVL--LSGGQRQ 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRgiTFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTIEKADEILVVEDGEI 556
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
23-234 |
9.92e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 54.48 E-value: 9.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGElavfrnrvIGFIFQFHYLLP 102
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH------------SGR--------ISFSSQFSWIMP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 efSAIENVMMPGmIAVSQGRSPSVIshrelyeKAEKLLDELALYARKNHKS-GE----LSGGEQQRVAVARALLLEPNVV 177
Cdd:cd03291 112 --GTIKENIIFG-VSYDEYRYKSVV-------KACQLEEDITKFPEKDNTVlGEggitLSGGQRARISLARAVYKDADLY 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1901209871 178 LADEPTGNLDTKTGEELF-----KLLMdiNQKRgitfIIVTHNESLSKRCHRTLEMVDGRLY 234
Cdd:cd03291 182 LLDSPFGYLDVFTEKEIFescvcKLMA--NKTR----ILVTSKMEHLKKADKILILHEGSSY 237
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
19-214 |
1.22e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 53.27 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGElAVFRNRVigfifQFH 98
Cdd:PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW------------QGE-PIRRQRD-----EYH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 99 YLL----------PEFSAIENVMMPGMIAVSQGRspsvishrelyEKAEKLLDELALYARKNHKSGELSGGEQQRVAVAR 168
Cdd:PRK13538 74 QDLlylghqpgikTELTALENLRFYQRLHGPGDD-----------EALWEALAQVGLAGFEDVPVRQLSAGQQRRVALAR 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1901209871 169 ALLLEPNVVLADEPTGNLDTKtGEELFKLLMDINQKRGITFIIVTH 214
Cdd:PRK13538 143 LWLTRAPLWILDEPFTAIDKQ-GVARLEALLAQHAEQGGMVILTTH 187
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
33-189 |
1.69e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 53.52 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 33 EAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKD--IDPFSLSngELAVFRNRVIGfifqfhyllPEFSAIENV 110
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDeiLDEFRGS--ELQNYFTKLLE---------GDVKVIVKP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 111 MMPGMI-AVSQGRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTK 189
Cdd:cd03236 94 QYVDLIpKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
23-187 |
1.86e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.93 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkDIDPFSLSNGElavfRNRVIGFIFQFHYLLP 102
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI------QIDGKTATRGD----RSRFMAYLGHLPGLKA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 EFSAIENV-MMPGMIAVSQGRSPSvishrelyekaekllDELALYARKNHKSG---ELSGGEQQRVAVARALLLEPNVVL 178
Cdd:PRK13543 96 DLSTLENLhFLCGLHGRRAKQMPG---------------SALAIVGLAGYEDTlvrQLSAGQKKRLALARLWLSPAPLWL 160
|
....*....
gi 1901209871 179 ADEPTGNLD 187
Cdd:PRK13543 161 LDEPYANLD 169
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
154-233 |
2.05e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 53.78 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLlmdINQ--KRGITFIIVTHN--ESLSKrCHRTLEMV 229
Cdd:PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL---INQlvQQGVAIIVISSElpEVLGL-SDRVLVMH 479
|
....
gi 1901209871 230 DGRL 233
Cdd:PRK13549 480 EGKL 483
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
154-233 |
2.33e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.58 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQK-RGItFIIVTHNESLSKRCHRTLEMVDGR 232
Cdd:PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKdKGI-IIISSEMPELLGITDRILVMSNGL 468
|
.
gi 1901209871 233 L 233
Cdd:PRK10982 469 V 469
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
36-232 |
3.71e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.19 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 36 VVGIVGASGVGKSTFLHVIGTLDKPTSGKVLY---KIDKDIDPFSLSNGelavfrnrvIGFIFQFHYLLPEFSAIENVMM 112
Cdd:PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKDSGSILFqgkEIDFKSSKEALENG---------ISMVHQELNLVLQRSVMDNMWL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 113 pgmiavsqGRSPS---VISHRELYEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTK 189
Cdd:PRK10982 97 --------GRYPTkgmFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1901209871 190 TGEELFKLLMDInQKRGITFIIVTHN-ESLSKRCHRTLEMVDGR 232
Cdd:PRK10982 169 EVNHLFTIIRKL-KERGCGIVYISHKmEEIFQLCDEITILRDGQ 211
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
20-217 |
4.82e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 51.41 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 20 ELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYK---IDKDIDPFslsngelavfrnrvIGFIFQ 96
Cdd:PRK13541 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKncnINNIAKPY--------------CTYIGH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 FHYLLPEFSAIENVMMPGMIAVSQGRSPSVISHRELYEkaekLLDElalyarknhKSGELSGGEQQRVAVARALLLEPNV 176
Cdd:PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD----LLDE---------KCYSLSSGMQKIVAIARLIACQSDL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1901209871 177 VLADEPTGNLDtKTGEELFKLLMDINQKRGITFIIVTHNES 217
Cdd:PRK13541 145 WLLDEVETNLS-KENRDLLNNLIVMKANSGGIVLLSSHLES 184
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
13-233 |
6.25e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 52.64 E-value: 6.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLH-VIGTLDKpTSGKVLYKidkdidpfslsnGELAvfrnrvi 91
Cdd:TIGR00957 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSaLLAEMDK-VEGHVHMK------------GSVA------- 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 92 gfifqfhyLLPEFSAIENVMMPGMIAVSQGRSPSviSHRELYEKAEKLLDELALYARKNHKSGE----LSGGEQQRVAVA 167
Cdd:TIGR00957 703 --------YVPQQAWIQNDSLRENILFGKALNEK--YYQQVLEACALLPDLEILPSGDRTEIGEkgvnLSGGQKQRVSLA 772
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 168 RALLLEPNVVLADEPTGNLDTKTGEELF-KLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFeHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKI 839
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
14-231 |
9.70e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 50.79 E-value: 9.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 14 FYMPAGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYKIDKDIDPfslsNGELAVFRNRV-IG 92
Cdd:cd03290 7 YFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEP----SFEATRSRNRYsVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 93 FIFQFHYLLpEFSAIENVMMPGmiAVSQGRSPSVISHRELYEKAEKLL--DELALYARKNHksgeLSGGEQQRVAVARAL 170
Cdd:cd03290 83 YAAQKPWLL-NATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPfgDQTEIGERGIN----LSGGQRQRICVARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 171 LLEPNVVLADEPTGNLDTKTGEEL-----FKLLMDinQKRgiTFIIVTHNESLSKRCHRTLEMVDG 231
Cdd:cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLmqegiLKFLQD--DKR--TLVLVTHKLQYLPHADWIIAMKDG 217
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
154-213 |
1.01e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 51.75 E-value: 1.01e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 154 GELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQkRGITFIIVT 213
Cdd:TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVS 460
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
38-214 |
2.74e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 50.63 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 38 GIVGASGVGKSTFL-----HVIGTLdkPTSGKVLYK---------------IDKDIDPFSLSNGELAVFRNRvigfifqf 97
Cdd:PLN03073 207 GLVGRNGTGKTTFLrymamHAIDGI--PKNCQILHVeqevvgddttalqcvLNTDIERTQLLEEEAQLVAQQ-------- 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 hyllpEFSAIENVMMPGMIAVSQGRSPSVISHR--ELYEKAEkLLDELALYAR--------------KNHKSGELSGGEQ 161
Cdd:PLN03073 277 -----RELEFETETGKGKGANKDGVDKDAVSQRleEIYKRLE-LIDAYTAEARaasilaglsftpemQVKATKTFSGGWR 350
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 162 QRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMdinqKRGITFIIVTH 214
Cdd:PLN03073 351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLL----KWPKTFIVVSH 399
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
24-234 |
2.78e-07 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 50.74 E-value: 2.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRnRVIGFIFQ----FHY 99
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL------LDGKPVTAEQPEDYR-KLFSAVFTdfhlFDQ 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 100 LLPefsaienvmmpgmiavSQGRSPSVishrelyEKAEKLLDELALYARKNHKSGE-----LSGGEQQRVAVARALLLEP 174
Cdd:PRK10522 412 LLG----------------PEGKPANP-------ALVEKWLERLKMAHKLELEDGRisnlkLSKGQKKRLALLLALAEER 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 175 NVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRLY 234
Cdd:PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLS 528
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
18-230 |
3.22e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 49.18 E-value: 3.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 18 AGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTLDKP--TSGKVLYKiDKDIDPFSlsngelAVFRNRVIgfi 94
Cdd:cd03233 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALaNRTEGNvsVEGDIHYN-GIPYKEFA------EKYPGEII--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 95 fqfhyllpeFSAIENVMMPgmiavsqgrspsVISHRELYEkaeklldeLALYARKNHKSGELSGGEQQRVAVARALLLEP 174
Cdd:cd03233 87 ---------YVSEEDVHFP------------TLTVRETLD--------FALRCKGNEFVRGISGGERKRVSIAEALVSRA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 175 NVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIvthneSLSKRCHRTLEMVD 230
Cdd:cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFV-----SLYQASDEIYDLFD 188
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
5-217 |
3.30e-07 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 50.49 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 5 IKVEGLekSFYMPAGELkVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELA 84
Cdd:PRK10790 341 IDIDNV--SFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR------LDGRPLSSLSHS 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 85 VFRNRViGFIFQFHYLLPEfSAIENVMMpgmiavsqGRSpsvISHRELYEKAEKL-LDELA------LYARKNHKSGELS 157
Cdd:PRK10790 412 VLRQGV-AMVQQDPVVLAD-TFLANVTL--------GRD---ISEEQVWQALETVqLAELArslpdgLYTPLGEQGNNLS 478
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 158 GGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrgITFIIVTHNES 217
Cdd:PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLS 536
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
19-218 |
4.06e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 49.26 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLD--KPTSGKVLYKiDKDI---DPFSLSNgeLAVFrnrvigF 93
Cdd:CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPayKILEGDILFK-GESIldlEPEERAH--LGIF------L 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 94 IFQFHYLLPEFSAIENVmmpgMIAVSQGRS----PSV--ISHRELYEKAEKLLDELALYARKNHKSGeLSGGEQQRVAVA 167
Cdd:CHL00131 89 AFQYPIEIPGVSNADFL----RLAYNSKRKfqglPELdpLEFLEIINEKLKLVGMDPSFLSRNVNEG-FSGGEKKRNEIL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 168 RALLLEPNVVLADEPTGNLDT---KTGEELFKLLMdiNQKRGItfIIVTHNESL 218
Cdd:CHL00131 164 QMALLDSELAILDETDSGLDIdalKIIAEGINKLM--TSENSI--ILITHYQRL 213
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
146-228 |
4.76e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 48.47 E-value: 4.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 146 YARKNHKSGELSGGEQQRVAVARALL--LEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKRCH 223
Cdd:cd03238 78 YLTLGQKLSTLSGGELQRVKLASELFsePPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDVLSSAD 156
|
....*
gi 1901209871 224 RTLEM 228
Cdd:cd03238 157 WIIDF 161
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
39-214 |
1.50e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 48.41 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 39 IVGASGVGKSTFLHV-IGTLdKPTSGKVlyKIDKDIdpfslsngELAVF-RNRVIgfifqfhyLLPEFSAIENVMMPGMI 116
Cdd:PRK11147 350 LIGPNGCGKTTLLKLmLGQL-QADSGRI--HCGTKL--------EVAYFdQHRAE--------LDPEKTVMDNLAEGKQE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 117 AVSQGRSPSVISHrelyekaekLLDELALYARKNHKSGELSGGEQQRVAVARaLLLEP-NVVLADEPTGNLDTKTGEELF 195
Cdd:PRK11147 411 VMVNGRPRHVLGY---------LQDFLFHPKRAMTPVKALSGGERNRLLLAR-LFLKPsNLLILDEPTNDLDVETLELLE 480
|
170
....*....|....*....
gi 1901209871 196 KLLMDInqkRGiTFIIVTH 214
Cdd:PRK11147 481 ELLDSY---QG-TVLLVSH 495
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
34-231 |
2.31e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 48.09 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 34 AEVVGIVGASGVGKSTFLHVIGTLDKPTSGkvlykiDKDIDPFSLSNGELAVFRNrvIGFIfqfhyllPEFSAIENVMMp 113
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSG------DATVAGKSILTNISDVHQN--MGYC-------PQFDAIDDLLT- 2028
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 114 gmiavsqGRSpsvisHRELY--------EKAEKL----LDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADE 181
Cdd:TIGR01257 2029 -------GRE-----HLYLYarlrgvpaEEIEKVanwsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 182 PTGNLDTKTGEELFKLLMDInQKRGITFIIVTHN-ESLSKRCHRTLEMVDG 231
Cdd:TIGR01257 2097 PTTGMDPQARRMLWNTIVSI-IREGRAVVLTSHSmEECEALCTRLAIMVKG 2146
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
23-233 |
2.89e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 47.13 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVI-GTL---DKPTSGKVLYKIDKDIDPFS-LSNGELAVFRNrvigfifqf 97
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALaGDLtggGAPRGARVTGDVTLNGEPLAaIDAPRLARLRA--------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 hyLLPE-------FSAIENVMMpgmiavsqGRSPSV-----ISHR--ELYEKAEKLLDELALYARKnhkSGELSGGEQQR 163
Cdd:PRK13547 87 --VLPQaaqpafaFSAREIVLL--------GRYPHArragaLTHRdgEIAWQALALAGATALVGRD---VTTLSGGELAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 164 VAVARAL---------LLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMV-DGRL 233
Cdd:PRK13547 154 VQFARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLaDGAI 233
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
35-212 |
4.73e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 46.83 E-value: 4.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 35 EVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdidpfslsNGELAVFRNrVIGFIFQFHYLLPEFSAIEnvmmpG 114
Cdd:PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL------------DGKPIDIRS-PRDAIRAGIMLCPEDRKAE-----G 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 115 MIAVSQGRSPSVISHRELYEKAEKLLD-----ELA-LYARK-NHKS-------GELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:PRK11288 342 IIPVHSVADNINISARRHHLRAGCLINnrweaENAdRFIRSlNIKTpsreqliMNLSGGNQQKAILGRWLSEDMKVILLD 421
|
170 180 190
....*....|....*....|....*....|..
gi 1901209871 181 EPTGNLDTKTGEELFKLLMDInQKRGITFIIV 212
Cdd:PRK11288 422 EPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFV 452
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
18-198 |
1.25e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 45.87 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 18 AGELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGtlDKPTSGKVLYKIdkdidpfSLSNG-ELAVFRNRVIGFIFQ 96
Cdd:TIGR00956 773 KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA--ERVTTGVITGGD-------RLVNGrPLDSSFQRSIGYVQQ 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 97 FHYLLPEFSAIENVMMPGMIavsqgRSPSVISHRELYEKAEKLLDELALYARKNHKSGELSGG---EQ-QRVAVARALLL 172
Cdd:TIGR00956 844 QDLHLPTSTVRESLRFSAYL-----RQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGlnvEQrKRLTIGVELVA 918
|
170 180
....*....|....*....|....*..
gi 1901209871 173 EPN-VVLADEPTGNLDTKTGEELFKLL 198
Cdd:TIGR00956 919 KPKlLLFLDEPTSGLDSQTAWSICKLM 945
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
19-233 |
1.33e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 19 GELKVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkdidpfSLSNG-ELAVFRNRvigfifQF 97
Cdd:PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-----------GLAKGiKLGYFAQH------QL 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 98 HYLLPEFSAIENVmmpgmiavsqgrspSVISHRELyekAEKLLDELALYARKNHK----SGELSGGEQQRVAVARALLLE 173
Cdd:PRK10636 386 EFLRADESPLQHL--------------ARLAPQEL---EQKLRDYLGGFGFQGDKvteeTRRFSGGEKARLVLALIVWQR 448
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 174 PNVVLADEPTGNLDTKTGEELFKLLMDINQkrgiTFIIVTHNESLSKRCHRTLEMV-DGRL 233
Cdd:PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDFEG----ALVVVSHDRHLLRSTTDDLYLVhDGKV 505
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
39-218 |
1.59e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 44.14 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 39 IVGASGVGKSTFLHVIG---TLDKPTSGKVLYKIDKDIDP----------FSLSNGELAVFRNrvigfifqfhyllpEFS 105
Cdd:cd03240 27 IVGQNGAGKTTIIEALKyalTGELPPNSKGGAHDPKLIREgevraqvklaFENANGKKYTITR--------------SLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 106 AIENVmmpgmIAVSQGRSPSVishrelyekaekLLDELalyarknhksGELSGGEQQ------RVAVARALLLEPNVVLA 179
Cdd:cd03240 93 ILENV-----IFCHQGESNWP------------LLDMR----------GRCSGGEKVlasliiRLALAETFGSNCGILAL 145
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1901209871 180 DEPTGNLDTKTGEE-LFKLLMDINQKRGITFIIVTHNESL 218
Cdd:cd03240 146 DEPTTNLDEENIEEsLAEIIEERKSQKNFQLIVITHDEEL 185
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
13-218 |
1.78e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 45.24 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELkVLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVlykidkdidpFSLSNGELAVF-RNRVI 91
Cdd:PLN03073 515 SFGYPGGPL-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV----------FRSAKVRMAVFsQHHVD 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 92 GFIFQFHYLLpefsaienVMMPGMIAVSQGRspsVISHRELYekaeKLLDELALYARKNhksgeLSGGEQQRVAVARALL 171
Cdd:PLN03073 584 GLDLSSNPLL--------YMMRCFPGVPEQK---LRAHLGSF----GVTGNLALQPMYT-----LSGGQKSRVAFAKITF 643
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1901209871 172 LEPNVVLADEPTGNLDTKTGEELFKLLMDInqKRGItfIIVTHNESL 218
Cdd:PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGV--LMVSHDEHL 686
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
156-221 |
1.84e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.50 E-value: 1.84e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 156 LSGGEQQRVAVARAL-LLEPN---VVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNESLSKR 221
Cdd:cd03227 78 LSGGEKELSALALILaLASLKprpLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAEL 146
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
127-228 |
2.69e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.82 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 127 ISHRELYEKAEKL----LDELALyarkNHKSGELSGGEQQRVAVARALLL---EPNVVLADEPTGNLDTKTGEELFKLLM 199
Cdd:PRK00635 781 LDEPSIHEKIHALcslgLDYLPL----GRPLSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQ 856
|
90 100
....*....|....*....|....*....
gi 1901209871 200 DINQKrGITFIIVTHNESLSKRCHRTLEM 228
Cdd:PRK00635 857 SLTHQ-GHTVVIIEHNMHVVKVADYVLEL 884
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
156-233 |
3.99e-05 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 43.89 E-value: 3.99e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
39-234 |
4.76e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.85 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 39 IVGASGVGKSTFLHVIgTLDKPT--------------SGKVLYKIDKDIDPFSLSngelavfrnrvigfifqFHYLLPEF 104
Cdd:PRK10938 291 IVGPNGAGKSTLLSLI-TGDHPQgysndltlfgrrrgSGETIWDIKKHIGYVSSS-----------------LHLDYRVS 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 105 SAIENVMMPGM---IAVSQGrspsvISHReLYEKAEKLLDELALYARK-NHKSGELSGGEQQRVAVARALLLEPNVVLAD 180
Cdd:PRK10938 353 TSVRNVILSGFfdsIGIYQA-----VSDR-QQKLAQQWLDILGIDKRTaDAPFHSLSWGQQRLALIVRALVKHPTLLILD 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 181 EPTGNLDTkTGEELFKLLMDINQKRGIT-FIIVTHNESLSKRC--HRtLEMV-DGRLY 234
Cdd:PRK10938 427 EPLQGLDP-LNRQLVRRFVDVLISEGETqLLFVSHHAEDAPACitHR-LEFVpDGDIY 482
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
35-234 |
5.18e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 35 EVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkidkdIDPfslsngelavfrnrvigfifqfhyllpefsaienvmmpg 114
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIY-----IDG--------------------------------------- 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 115 miavsqgrspsvishrelyEKAEKLLDELALYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEEL 194
Cdd:smart00382 39 -------------------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALL 99
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1901209871 195 FKL-----LMDINQKRGITFIIVTHNESLSKRcHRTLEMVDGRLY 234
Cdd:smart00382 100 LLLeelrlLLLLKSEKNLTVILTTNDEKDLGP-ALLRRRFDRRIV 143
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
23-233 |
7.86e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 43.57 E-value: 7.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 23 VLKGIDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRNrVIGFIFQFHYLlp 102
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL------IDGCDISKFGLMDLRK-VLGIIPQAPVL-- 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 103 eFSAienvmmpgmiAVSQGRSP-SVISHRELYEKAEK--LLDELalyaRKNHK--------SGE-LSGGEQQRVAVARAL 170
Cdd:PLN03130 1325 -FSG----------TVRFNLDPfNEHNDADLWESLERahLKDVI----RRNSLgldaevseAGEnFSVGQRQLLSLARAL 1389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901209871 171 LLEPNVVLADEPTGNLDTKTGEELFKLLMDinQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PLN03130 1390 LRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILVLDAGRV 1450
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
13-220 |
1.66e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 41.47 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 13 SFYMPAGELKVLKGidavfneaevvgivgASGVGKSTFLHVIGTLDKPTSGKVLY---KIDKDidpfslsngeLAVFRNR 89
Cdd:PRK13540 21 SFHLPAGGLLHLKG---------------SNGAGKTTLLKLIAGLLNPEKGEILFerqSIKKD----------LCTYQKQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 90 VIgFIFQFHYLLPEFSAIENVMMPgmIAVSQGRspsvISHRELYE--KAEKLLDelalyarknHKSGELSGGEQQRVAVA 167
Cdd:PRK13540 76 LC-FVGHRSGINPYLTLRENCLYD--IHFSPGA----VGITELCRlfSLEHLID---------YPCGLLSSGQKRQVALL 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 168 RALLLEPNVVLADEPTGNLDTKTGEELFKLLMDiNQKRGITFIIVTHNE-SLSK 220
Cdd:PRK13540 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQE-HRAKGGAVLLTSHQDlPLNK 192
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
27-233 |
1.87e-04 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 42.09 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 27 IDAVFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLykidkdIDPFSLSNGELAVFRNRvigF--IFQFHYLLPEF 104
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEIL------LDGQPVTADNREAYRQL---FsaVFSDFHLFDRL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 105 SAIENVMMPgmiavsqgrspsvishrelyEKAEKLLDELALyarkNHK---------SGELSGGEQQRVAVARALLLEPN 175
Cdd:COG4615 422 LGLDGEADP--------------------ARARELLERLEL----DHKvsvedgrfsTTDLSQGQRKRLALLVALLEDRP 477
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 176 VVLADE------PTgnldtktgeelFK------LLMDInQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:COG4615 478 ILVFDEwaadqdPE-----------FRrvfyteLLPEL-KARGKTVIAISHDDRYFDLADRVLKMDYGKL 535
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
156-233 |
3.33e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 41.30 E-value: 3.33e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMdINQKRGITFIIVTHNESLSKRCHRTLEMVDGRL 233
Cdd:PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF-LGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
30-83 |
3.47e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.25 E-value: 3.47e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901209871 30 VFNEAEVVGIVGASGVGKSTFLHVIGTLDKPTSGK-------VLYKIDKdidpFSLSNGEL 83
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNdewdgitPVYKPQY----IDLSGGEL 77
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
156-213 |
3.76e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 41.26 E-value: 3.76e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELF-KLLMDinQKRGITFIIVT 213
Cdd:PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFdKCIKD--ELRGKTRVLVT 797
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
156-212 |
3.96e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.15 E-value: 3.96e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDINQKrGITFIIV 212
Cdd:PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLV 191
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
35-224 |
4.20e-04 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 40.88 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 35 EVVGIVGASGVGKSTFLHVIGTLDKPTSGKVLYkIDKDIDPfslsnGELAVfRNRViGFIFQFHYLLPEFSAIENVMMpg 114
Cdd:NF033858 293 EIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWL-FGQPVDA-----GDIAT-RRRV-GYMSQAFSLYGELTVRQNLEL-- 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 115 miavsqgrspsvisHRELY----EKAEKLLDELA----LYARKNHKSGELSGGEQQRVAVARALLLEPNVVLADEPTGNL 186
Cdd:NF033858 363 --------------HARLFhlpaAEIAARVAEMLerfdLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGV 428
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1901209871 187 DTKTGEELFKLLMDINQKRGITFIIVTH--NESLskRCHR 224
Cdd:NF033858 429 DPVARDMFWRLLIELSREDGVTIFISTHfmNEAE--RCDR 466
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
163-225 |
5.40e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.40e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 163 RVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDI----NQKRGITFIIVTHNESLSKRCHRT 225
Cdd:TIGR00606 1213 RLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIiksrSQQRNFQLLVITHDEDFVELLGRS 1279
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
24-216 |
7.26e-04 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 39.55 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 24 LKGIDAVFNEAEVVGIVGASGVGKSTFlhVIGTLdkPTSGKVLYkidkdIDpfSLSngelAVFRNrvigfiFQFHYLLPE 103
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSL--AFDTI--YAEGQRRY-----VE--SLS----AYARQ------FLGQMDKPD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901209871 104 FSAIENvmMPGMIAVSQ---GRSP--SVISHRELYEKAEKL------------LDELAL-YARKNHKSGELSGGEQQRVA 165
Cdd:cd03270 70 VDSIEG--LSPAIAIDQkttSRNPrsTVGTVTEIYDYLRLLfarvgirerlgfLVDVGLgYLTLSRSAPTLSGGEAQRIR 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 166 VARAL---LLEPNVVLaDEPTGNLDTKTGEELFKLLMDINQKrGITFIIVTHNE 216
Cdd:cd03270 148 LATQIgsgLTGVLYVL-DEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDE 199
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
108-183 |
9.63e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 39.77 E-value: 9.63e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901209871 108 ENVMMPGMIAVSQGrspSVISHRELYEKAEKLLDELALYARK-NHKSGELSGGEQQRVAVARALLLEPNVVLADEPT 183
Cdd:NF040905 359 RNITLANLGKVSRR---GVIDENEEIKVAEEYRKKMNIKTPSvFQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPT 432
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
156-214 |
1.10e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 39.96 E-value: 1.10e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVVLADEPTGNLDTKTGEELFKLLMDiNQKRGITFIIVTH 214
Cdd:PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK-DELKGKTRVLVTN 798
|
|
| COG1483 |
COG1483 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
121-178 |
6.74e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 441092 [Multi-domain] Cd Length: 992 Bit Score: 37.35 E-value: 6.74e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1901209871 121 GRSPSVIshrelyekaekLLDELALYARKNHKSGELSGG--EQQrVAVARALL----LEPNVVL 178
Cdd:COG1483 190 GGRPCLI-----------LIDELVAYARQLRAVKVLDSGlfDQL-LTFLQALTeaakGVPNAVL 241
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
156-228 |
6.96e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 37.50 E-value: 6.96e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901209871 156 LSGGEQQRVAVARALLLEPNVV--LADEPTGNLDTKTGEElfklLMDINQK---RGITFIIVTHNESLSKRCHRTLEM 228
Cdd:PRK00635 477 LSGGEQERTALAKHLGAELIGItyILDEPSIGLHPQDTHK----LINVIKKlrdQGNTVLLVEHDEQMISLADRIIDI 550
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
156-215 |
9.32e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 36.91 E-value: 9.32e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1901209871 156 LSGGEQQRVAVARALLLE---PNVVLADEPTGNLDTktgeELFKLLMDINQ---KRGITFIIVTHN 215
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHF----DDIKKLLEVLQrlvDKGNTVVVIEHN 891
|
|
| |
