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Conserved domains on  [gi|1900939927|dbj|GGJ91587|]
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hypothetical protein GCM10007043_01620 [Calditerricola satsumensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
3-68 7.02e-09

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 51.16  E-value: 7.02e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900939927   3 ITWRPNPEADVVGYRVYR-VDPSGRERKLGAVPAhepLQFVDPAPEAMA---YRVIAVDVAGRVSGRAEV 68
Cdd:COG3401   251 LSWDPVTESDATGYRVYRsNSGDGPFTKVATVTT---TSYTDTGLTNGTtyyYRVTAVDAAGNESAPSNV 317
 
Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
3-68 7.02e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 51.16  E-value: 7.02e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900939927   3 ITWRPNPEADVVGYRVYR-VDPSGRERKLGAVPAhepLQFVDPAPEAMA---YRVIAVDVAGRVSGRAEV 68
Cdd:COG3401   251 LSWDPVTESDATGYRVYRsNSGDGPFTKVATVTT---TSYTDTGLTNGTtyyYRVTAVDAAGNESAPSNV 317
 
Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
3-68 7.02e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 51.16  E-value: 7.02e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900939927   3 ITWRPNPEADVVGYRVYR-VDPSGRERKLGAVPAhepLQFVDPAPEAMA---YRVIAVDVAGRVSGRAEV 68
Cdd:COG3401   251 LSWDPVTESDATGYRVYRsNSGDGPFTKVATVTT---TSYTDTGLTNGTtyyYRVTAVDAAGNESAPSNV 317
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
3-86 1.44e-07

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 47.30  E-value: 1.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900939927   3 ITWRPNPEADVVGYRVYR-VDPSGRERKLGAVPahEPLQFVDPAPEA---MAYRVIAVDVAGRVSGRAEVRLPHAPSRET 78
Cdd:COG3401   345 LSWTASSDADVTGYNVYRsTSGGGTYTKIAETV--TTTSYTDTGLTPgttYYYKVTAVDAAGNESAPSEEVSATTASAAS 422


                  ....*...
gi 1900939927  79 SLPASAPS 86
Cdd:COG3401   423 GESLTASV 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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