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Conserved domains on  [gi|1898303852|gb|ANO57419|]
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Rz1-like lysis protein [Pseudomonas phage AN14]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
O_Spanin_T7 super family cl10201
Spanin, outer lipoprotein subunit T7-like virus; This family contains members of the outer ...
 12-71 4.74e-03

Spanin, outer lipoprotein subunit T7-like virus; This family contains members of the outer membrane spanin subunit protein (o-spanin), found in Bacteriophage T7. Spanins are lytic proteins that act on bacterial outer membrane by disrupting it, allowing progeny virions to spread. O-spanin acts together with inner membrane spanin subunit (i-spanin) to form the spanin complex necessary for function. The gene encoding this protein (Rz1-like o-spanin) is completely embedded in the longer gene for the Rz-like i-spanin subunit.


The actual alignment was detected with superfamily member PHA00407:

Pssm-ID: 471971  Cd Length: 84  Bit Score: 32.98  E-value: 4.74e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1898303852 12 SPNSKRTPGRGMSA----LLLICGLAISGCASKSPLVVRPDPVRLSpppAELMEPeqPNLRQRL 71
Cdd:PHA00407  20 YRLSTKKTLRRWKAaligLLLICVATISGCASESNLPVEPQKVTVD---ASLMVE--PNLTKEM 78
 
Name Accession Description Interval E-value
PHA00407 PHA00407
phage lambda Rz1-like protein
 12-71 4.74e-03

phage lambda Rz1-like protein


Pssm-ID: 164798  Cd Length: 84  Bit Score: 32.98  E-value: 4.74e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1898303852 12 SPNSKRTPGRGMSA----LLLICGLAISGCASKSPLVVRPDPVRLSpppAELMEPeqPNLRQRL 71
Cdd:PHA00407  20 YRLSTKKTLRRWKAaligLLLICVATISGCASESNLPVEPQKVTVD---ASLMVE--PNLTKEM 78
 
Name Accession Description Interval E-value
PHA00407 PHA00407
phage lambda Rz1-like protein
 12-71 4.74e-03

phage lambda Rz1-like protein


Pssm-ID: 164798  Cd Length: 84  Bit Score: 32.98  E-value: 4.74e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1898303852 12 SPNSKRTPGRGMSA----LLLICGLAISGCASKSPLVVRPDPVRLSpppAELMEPeqPNLRQRL 71
Cdd:PHA00407  20 YRLSTKKTLRRWKAaligLLLICVATISGCASESNLPVEPQKVTVD---ASLMVE--PNLTKEM 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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