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Chain B, Genome polyprotein
Flavi_E_C domain-containing protein( domain architecture ID 10187330)
Flavi_E_C domain-containing protein
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Flavi_E_C | cd12149 | Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E; The ... |
10-101 | 2.41e-51 | |||
Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E; The C-terminal domain (domain III) of Flavivirus glycoprotein E appears to be involved in low-affinity interactions with negatively charged glycoaminoglycans on the host cell surface. Domain III may also play a role in interactions with alpha-v-beta-3 integrins in West Nile virus, Japanese encephalitis virus, and Dengue virus. The interface between domain I and domain III appears to be destabilized by the low-pH environment of the endosome, and domain III may play a vital role in the conformational changes of envelope glycoprotein E that follow the clathrin-mediated endocytosis of viral particles and are a prerequisite to membrane fusion. : Pssm-ID: 213392 Cd Length: 91 Bit Score: 156.31 E-value: 2.41e-51
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Name | Accession | Description | Interval | E-value | |||
Flavi_E_C | cd12149 | Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E; The ... |
10-101 | 2.41e-51 | |||
Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E; The C-terminal domain (domain III) of Flavivirus glycoprotein E appears to be involved in low-affinity interactions with negatively charged glycoaminoglycans on the host cell surface. Domain III may also play a role in interactions with alpha-v-beta-3 integrins in West Nile virus, Japanese encephalitis virus, and Dengue virus. The interface between domain I and domain III appears to be destabilized by the low-pH environment of the endosome, and domain III may play a vital role in the conformational changes of envelope glycoprotein E that follow the clathrin-mediated endocytosis of viral particles and are a prerequisite to membrane fusion. Pssm-ID: 213392 Cd Length: 91 Bit Score: 156.31 E-value: 2.41e-51
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Flavi_glycop_C | pfam02832 | Flavivirus glycoprotein, immunoglobulin-like domain; |
3-101 | 1.17e-36 | |||
Flavivirus glycoprotein, immunoglobulin-like domain; Pssm-ID: 280922 Cd Length: 97 Bit Score: 119.37 E-value: 1.17e-36
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Name | Accession | Description | Interval | E-value | |||
Flavi_E_C | cd12149 | Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E; The ... |
10-101 | 2.41e-51 | |||
Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E; The C-terminal domain (domain III) of Flavivirus glycoprotein E appears to be involved in low-affinity interactions with negatively charged glycoaminoglycans on the host cell surface. Domain III may also play a role in interactions with alpha-v-beta-3 integrins in West Nile virus, Japanese encephalitis virus, and Dengue virus. The interface between domain I and domain III appears to be destabilized by the low-pH environment of the endosome, and domain III may play a vital role in the conformational changes of envelope glycoprotein E that follow the clathrin-mediated endocytosis of viral particles and are a prerequisite to membrane fusion. Pssm-ID: 213392 Cd Length: 91 Bit Score: 156.31 E-value: 2.41e-51
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Flavi_glycop_C | pfam02832 | Flavivirus glycoprotein, immunoglobulin-like domain; |
3-101 | 1.17e-36 | |||
Flavivirus glycoprotein, immunoglobulin-like domain; Pssm-ID: 280922 Cd Length: 97 Bit Score: 119.37 E-value: 1.17e-36
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Blast search parameters | ||||
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