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Conserved domains on  [gi|1896828112|gb|QNJ59946|]
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ATP synthase F0 subunit 6 (mitochondrion) [Stenacris vitreipennis]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009593)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 7.22e-90

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214441  Cd Length: 223  Bit Score: 263.57  E-value: 7.22e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDPSTNiFNLSMNWLSVFIGLLMIPALFWMTPSRINIIWNNMNINLHNEFKTLIGPKsFNGTTMIFISIFIM 80
Cdd:MTH00157    1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPK-NKGSTLIFISLFSF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  81 MLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAV 160
Cdd:MTH00157   79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 161 RLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSETY 225
Cdd:MTH00157  159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 7.22e-90

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 263.57  E-value: 7.22e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDPSTNiFNLSMNWLSVFIGLLMIPALFWMTPSRINIIWNNMNINLHNEFKTLIGPKsFNGTTMIFISIFIM 80
Cdd:MTH00157    1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPK-NKGSTLIFISLFSF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  81 MLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAV 160
Cdd:MTH00157   79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 161 RLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSETY 225
Cdd:MTH00157  159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-223 1.94e-44

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 148.12  E-value: 1.94e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   5 LFSTFDPST-NIFNLSMNWLSVFIGLLMIPALF----WMTPSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIFiSIFI 79
Cdd:TIGR01131   1 LFSQFDISPiTLFSLTLLSLILLLSLLIFLISSslsrWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF-TLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  80 MMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLA 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 160 VRLAANMIAGHLLLTLL-GNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSE 223
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLsGLLFSLMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLND 224
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 73-222 1.57e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 130.60  E-value: 1.57e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  73 IFISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNI 152
Cdd:cd00310     7 LLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISEL 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 153 IRPGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSS 222
Cdd:cd00310    87 IRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
20-222 1.71e-24

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 96.40  E-value: 1.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  20 MNWLSVFIGLLMIPALFWMT----PSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIFISIFIMMLFNNFMGLF---PY 92
Cdd:pfam00119   3 MSLIVALILLLFLLLATRKTkklvPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  93 IFTSTSHMVLTFSIALPLWVSFMLFGWINH-TNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAVRLAANMIAGHL 171
Cdd:pfam00119  83 GFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHL 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1896828112 172 LLTLLGNTGNSMSMNLFMFLII---GQMMLLTLESAVAMIQAYVFSILSTLYSS 222
Cdd:pfam00119 163 LLLLLAGLIFALLSAGFLLGVIpplLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 76-220 6.11e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.58  E-value: 6.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  76 SIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINH-TNHMFTHLVPQGTPtALMSFMVLIETISNIIR 154
Cdd:COG0356    63 TLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELAR 141

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828112 155 PGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLltLESAVAMIQAYVFSILSTLY 220
Cdd:COG0356   142 PLSLSLRLFGNMFAGHIILLLLAGLAPFLLLGVLSLLLPVAWTA--FELLVGFLQAYIFTMLTAVY 205
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 7.22e-90

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 263.57  E-value: 7.22e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDPSTNiFNLSMNWLSVFIGLLMIPALFWMTPSRINIIWNNMNINLHNEFKTLIGPKsFNGTTMIFISIFIM 80
Cdd:MTH00157    1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPK-NKGSTLIFISLFSF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  81 MLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAV 160
Cdd:MTH00157   79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 161 RLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSETY 225
Cdd:MTH00157  159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-225 2.69e-47

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 155.58  E-value: 2.69e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDP-STNIFNLSM-NWLSVFIGLLMIPALFWMTPSRINIIWNNMNInLHNEFKTLIGPKSFNGTTMIFISIF 78
Cdd:MTH00176    1 MLVDLFSSFDPpNKNIFSMISlSWITLLLFLLLMPSSVWFCPSKLQVFMLMFST-FLPEMILRSNGSYILGSASIIISLF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  79 IMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTL 158
Cdd:MTH00176   80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 159 AVRLAANMIAGHLLLT---LLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSETY 225
Cdd:MTH00176  160 AVRLAANLSAGHLLLGllgAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-223 1.94e-44

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 148.12  E-value: 1.94e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   5 LFSTFDPST-NIFNLSMNWLSVFIGLLMIPALF----WMTPSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIFiSIFI 79
Cdd:TIGR01131   1 LFSQFDISPiTLFSLTLLSLILLLSLLIFLISSslsrWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF-TLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  80 MMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLA 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 160 VRLAANMIAGHLLLTLL-GNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSE 223
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLsGLLFSLMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLND 224
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 73-222 1.57e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 130.60  E-value: 1.57e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  73 IFISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNI 152
Cdd:cd00310     7 LLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISEL 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 153 IRPGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSS 222
Cdd:cd00310    87 IRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-223 5.96e-37

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 129.08  E-value: 5.96e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDPSTNIFNLSMN----WLSVFIGLLMIPALFWMTPSRINIIWNNMNINLHNEFKTLIGpKSFNGTTMIFIS 76
Cdd:MTH00005    1 MLTDIFSSFDPATNSLFNNLSstafWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFG-KHLKGFSSLISA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  77 IFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPG 156
Cdd:MTH00005   80 LFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPI 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 157 TLAVRLAANMIAGHLLLTLLGNTGNSM---SMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSE 223
Cdd:MTH00005  160 TLSFRLAANMSAGHIVLSLIGIYAASAlfsSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 3-223 6.63e-35

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 123.54  E-value: 6.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   3 TNLFSTFDPSTnIFNLSMNWLSVFIGL---LMIPALFWmTPSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIFiSIFI 79
Cdd:MTH00035    5 NSIFGQFSPDT-ILFIPLTLLSSVIALswlFFINPTNW-LPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLT-TVFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  80 MMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLA 159
Cdd:MTH00035   82 LILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALG 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828112 160 VRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLI--IGQMMLLTLESAVAMIQAYVFSILSTLYSSE 223
Cdd:MTH00035  162 LRLAANLTAGHLLIFLLSTAIWELSNSPLISIItlIIFFLLFILEIGVACIQAYVFTALVHFYLEQ 227
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-224 4.99e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 116.12  E-value: 4.99e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDPSTNIFNL--SMNWLSVFIGLLMIPALFWMTPSRINIIWNNMNINLHNEFKTLIGpKSFNGTTMIFISIF 78
Cdd:MTH00173    1 MMVDLFSSFDDHNSSFSSlsFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSG-LNLGGFSLLLSSLF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  79 IMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTL 158
Cdd:MTH00173   80 LFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTL 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 159 AVRLAANMIAGHLLLT----LLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSET 224
Cdd:MTH00173  160 TVRLLANISAGHIVLTlignYLSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDEH 229
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-223 1.86e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 114.66  E-value: 1.86e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDpSTNIFNLSMNWLSVFIGLLMIPAL-FWMTPSRINIIWNNMNINLHNEFKTLIGPKSFNGTtMIFISIFI 79
Cdd:MTH00179    1 MMLSMFDQFE-SPSLLGIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWA-VLFLSLML 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  80 MMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLA 159
Cdd:MTH00179   79 FLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALG 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896828112 160 VRLAANMIAGHLLLTLL---GNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSE 223
Cdd:MTH00179  159 VRLTANITAGHLLMHLIssaVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-223 4.28e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 113.77  E-value: 4.28e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112   1 MMTNLFSTFDPSTNIFnlsmnwLSVFIGLLMIPALFWMTPSRINI---IWNNMNINLHNEFKTLIGPKSFNGT--TMIFI 75
Cdd:MTH00120    1 MNLNFFDQFSSPELLG------IPLILLAMLIPALLIPSPKNRLLtnrLTTLQLWLIKLITKQLMLPLNKKGHkwALILT 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  76 SIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRP 155
Cdd:MTH00120   75 SLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRP 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896828112 156 GTLAVRLAANMIAGHL---LLTLLGNTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSE 223
Cdd:MTH00120  155 LALGVRLTANLTAGHLliqLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 72-223 6.21e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 108.04  E-value: 6.21e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  72 MIFISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISN 151
Cdd:MTH00132   71 LLLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISL 150

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 152 IIRPGTLAVRLAANMIAGHLLLTLLGNTGNSM--SMNLFMFLIIGQMMLLT-LESAVAMIQAYVFSILSTLYSSE 223
Cdd:MTH00132  151 FIRPLALGVRLTANLTAGHLLIQLIATAAFVLlpLMPTVAILTATLLFLLTlLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 54-223 7.81e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 102.74  E-value: 7.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  54 LHNEFKTLIGPKSFNGT--TMIFISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLV 131
Cdd:MTH00073   51 LQNFTKQLMLPLNTPGHkwALILTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 132 PQGTPTALMSFMVLIETISNIIRPGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLL---TLESAVAMI 208
Cdd:MTH00073  131 PEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFlltLLEIAVAMI 210

                         170
                  ....*....|....*
gi 1896828112 209 QAYVFSILSTLYSSE 223
Cdd:MTH00073  211 QAYVFVLLLSLYLQE 225
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 75-225 3.75e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 101.24  E-value: 3.75e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  75 ISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIR 154
Cdd:MTH00175   87 LSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIR 166

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 155 PGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLLT----LESAVAMIQAYVFSILSTLYSSETY 225
Cdd:MTH00175  167 AISLGVRLAANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLIMIfitlLEMAVAVIQAYVFCLLTTIYLGDTI 241
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 71-220 1.62e-25

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 99.26  E-value: 1.62e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  71 TMIFISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETIS 150
Cdd:MTH00101   69 SLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETIS 148

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828112 151 NIIRPGTLAVRLAANMIAGHLLL-----TLLGNTGNSMSMNLFMFLIIgqMMLLTLESAVAMIQAYVFSILSTLY 220
Cdd:MTH00101  149 LFIQPMALAVRLTANITAGHLLIhliggATLALMSISTTTALITFIIL--ILLTILEFAVALIQAYVFTLLVSLY 221
ATP-synt_A pfam00119
ATP synthase A chain;
20-222 1.71e-24

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 96.40  E-value: 1.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  20 MNWLSVFIGLLMIPALFWMT----PSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIFISIFIMMLFNNFMGLF---PY 92
Cdd:pfam00119   3 MSLIVALILLLFLLLATRKTkklvPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  93 IFTSTSHMVLTFSIALPLWVSFMLFGWINH-TNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAVRLAANMIAGHL 171
Cdd:pfam00119  83 GFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHL 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1896828112 172 LLTLLGNTGNSMSMNLFMFLII---GQMMLLTLESAVAMIQAYVFSILSTLYSS 222
Cdd:pfam00119 163 LLLLLAGLIFALLSAGFLLGVIpplLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 15-224 6.69e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 95.11  E-value: 6.69e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  15 IFNLSMNWLSVFIGLLMIPALFWMTPSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIfISIFIMMLFNNFMGLFPYIF 94
Cdd:MTH00172   17 LTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFI-ISLFFFIVFLNLLGLFPYVF 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  95 TSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAVRLAANMIAGHLLLT 174
Cdd:MTH00172   96 TPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFA 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1896828112 175 LLGNTGNSM---SMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLYSSET 224
Cdd:MTH00172  176 ILAGFGFNMlcaSGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADT 228
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 76-220 6.11e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.58  E-value: 6.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  76 SIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINH-TNHMFTHLVPQGTPtALMSFMVLIETISNIIR 154
Cdd:COG0356    63 TLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELAR 141

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828112 155 PGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGQMMLltLESAVAMIQAYVFSILSTLY 220
Cdd:COG0356   142 PLSLSLRLFGNMFAGHIILLLLAGLAPFLLLGVLSLLLPVAWTA--FELLVGFLQAYIFTMLTAVY 205
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 38-224 2.53e-16

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 75.36  E-value: 2.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  38 MTPSRINIIWNNMNINLHNEFKTLIGPKSFNGTTMIfISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLF 117
Cdd:MTH00174   59 LVPNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFV-LSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 118 GWINHTNHMFTHLVPQGTPTALMSFMVLIETISNIIRPGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFM---FLIIG 194
Cdd:MTH00174  138 GLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILigsFVPFA 217

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1896828112 195 QMMLLT-LESAVAMIQAYVFSILSTLYSSET 224
Cdd:MTH00174  218 ILIFVTiLEMAVAIIQAYVFTLLTIVYLRDT 248
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 73-220 1.71e-14

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 69.82  E-value: 1.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  73 IFISIFIMMLFNNFMGLFP-YIFTSTSHMVLTFSIALPLWVSFMLFG-WINHTNHMFTHLVPQGTPtalmsFMVLIETIS 150
Cdd:PRK05815   75 LAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGiKKKGLGGYLKEFYLQPHP-----LLLPIEIIS 149

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 151 NIIRPGTLAVRLAANMIAGHLLLTLLGNTGNSMSMNLFMFLIIGqMMLLTLESAVAMIQAYVFSILSTLY 220
Cdd:PRK05815  150 EFSRPISLSLRLFGNMLAGELILALIALLGGAGLLLALAPLILP-VAWTIFEIFVGTLQAYIFMMLTIVY 218
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 75-220 4.19e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 58.60  E-value: 4.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  75 ISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALplwVSFMLFGWINHTNH----MFTHLVpQGTPTALMSFMVLIETIS 150
Cdd:PRK13419  175 LTVFFFILVCNLLGLVPYGATATGNINVTLTLAV---FTFFITQYAAIKAHgikgYLAHLT-GGTHWSLWIIMIPIEFIG 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112 151 NIIRPGTLAVRLAANMIAGHLLLTLLGN-----------TGNSMSMNLFMFLiigqmmlltLESAVAMIQAYVFSILSTL 219
Cdd:PRK13419  251 LFTKPFALTVRLFANMTAGHIVILSLIFisfilksyivaVAVSVPFAIFIYL---------LELFVAFLQAYIFTMLSAL 321


                  .
gi 1896828112 220 Y 220
Cdd:PRK13419  322 F 322
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 72-223 3.01e-06

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 46.12  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  72 MIFISIFIMMLFNNFMGLFPYIFTSTSHMVLTFSIALPLWVSFMLFGWINhtNHMFTHLVPQGTPTALMSF-MVLIETIS 150
Cdd:MTH00087   53 VISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSK--SEKFSVYLSKGSDSFLKTFsMLFVEIVS 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1896828112 151 NIIRPGTLAVRLAANMIAGHllltLLGNTGNSMSMNLFMFLIIGQMMlltlESAVAMIQAYVFSILSTLYSSE 223
Cdd:MTH00087  131 ELSRPLALTLRLTVNLMVGH----LISSLLNFLGEKYVWLSILAIMM----ECFVAFIQSYIFSRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 95-220 6.97e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 46.04  E-value: 6.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  95 TSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVLIETI-SNIIRPGTLAVRLAANMIAGHLLL 173
Cdd:PRK13417  217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1896828112 174 TLLG-NTGNSMSMNLFMFLIIGQMMLLTLESAVAMIQAYVFSILSTLY 220
Cdd:PRK13417  297 LALMgFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLF 344
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 67-169 2.96e-05

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 42.95  E-value: 2.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828112  67 FNGTTMIFISIFIMMLFNNFMGL-FPYIFTSTSHMVLTFSIALPLWVSFMLFGWINHTNHMFTHLVPQGTPTALMSFMVL 145
Cdd:MTH00050   18 LGGSVSYYYSVVLFIVLFLFLLYrLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCI 97

                          90       100
                  ....*....|....*....|....
gi 1896828112 146 IETISNIIRPGTLAVRLAANMIAG 169
Cdd:MTH00050   98 AETISYIIRPVVLILRPFINISLG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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