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Conserved domains on  [gi|1896070502|gb|QNJ47379|]
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NADH dehydrogenase subunit 6, partial (mitochondrion) [Tetrix subulata]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-86 2.30e-16

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 68.68  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070502   1 MKMIIMMSTMLSMLFMNTKVPMQMIIIMLMQTTLTTFMMSIKNKSSWFTYMLMIIFIGGMMVLFIYITSITPNEQTKKNT 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80


                  ....*.
gi 1896070502  81 MTIIMM 86
Cdd:MTH00166   81 KLLILF 86
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-86 2.30e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 68.68  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070502   1 MKMIIMMSTMLSMLFMNTKVPMQMIIIMLMQTTLTTFMMSIKNKSSWFTYMLMIIFIGGMMVLFIYITSITPNEQTKKNT 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80


                  ....*.
gi 1896070502  81 MTIIMM 86
Cdd:MTH00166   81 KLLILF 86
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-86 2.30e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 68.68  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070502   1 MKMIIMMSTMLSMLFMNTKVPMQMIIIMLMQTTLTTFMMSIKNKSSWFTYMLMIIFIGGMMVLFIYITSITPNEQTKKNT 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80


                  ....*.
gi 1896070502  81 MTIIMM 86
Cdd:MTH00166   81 KLLILF 86
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-74 4.33e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 33.83  E-value: 4.33e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070502   1 MKMIIMMSTMLSMLFM--NTKVPMQMIIIMLMQTTLTTFMMSiKNKSSWFTYMLMIIFIGGMMVLFIYITSITPNE 74
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLfpLSAHPLTLGVSLLLSSLLSCLIIT-MESNSWYGYILFLIYIGGLLVLFGYMVALSPNE 75
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-86 5.66e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 33.71  E-value: 5.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070502   1 MKMIIMMSTMLSMLFMNTKVPMQMIIiMLMQTTLTTFMMSIKNKSSWFTYMLMIIFIGGMMVLFIYITSITPNEQTKKNT 80
Cdd:MTH00152    3 LMILLSVCFSLFLLLPLSKQPLSLGL-VLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNF 81


                  ....*.
gi 1896070502  81 MTIIMM 86
Cdd:MTH00152   82 KFVFFS 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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