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Conserved domains on  [gi|1896069881|gb|QNJ47096|]
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cytochrome b, partial (mitochondrion) [Anostostoma australasiae]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 701.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  12 FKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  92 FICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 172 DNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFWSMTS 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1896069881 332 IVILLTWIGARPVEDPYILIGQILTILYFLYYILNP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 701.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  12 FKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  92 FICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 172 DNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFWSMTS 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1896069881 332 IVILLTWIGARPVEDPYILIGQILTILYFLYYILNP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 1.28e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.49  E-value: 1.28e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  17 NALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLY 96
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  97 LHVGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNA 174
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 175 TLTRFFTFH-FVLPFIVAAFAMIHLLFLHQTGSNNPLG----LNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPy 249
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 250 lLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFW 327
Cdd:COG1290   264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1896069881 328 SMTSIVILLTWIGARPveDPYILIGQILTILYFLYYIL 365
Cdd:COG1290   343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.50e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.84  E-value: 6.50e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  10 PLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  90 FFFICLYLHVGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1896069881 168 GFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.81e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 241.90  E-value: 1.81e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  19 LVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  99 VGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1896069881 177 TRFFTFHFVLPFIVAAFAMIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-345 9.24e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 9.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 238 ALLIFLSLLEPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHN-FRGL 316
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNP 123

                          90       100
                  ....*....|....*....|....*....
gi 1896069881 317 QFYPINQSLFWSMTSIVILLTWIGARPVE 345
Cdd:TIGR01156 124 FRRPVATTVFLFGTVVALWLGIGATLPID 152
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 701.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  12 FKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  92 FICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 172 DNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFWSMTS 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1896069881 332 IVILLTWIGARPVEDPYILIGQILTILYFLYYILNP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 637.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   1 MNKPMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFL 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  81 RTLHANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 161 LVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 241 IFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1896069881 321 INQSLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYYILNPIIMKMWDHLL 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 620.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   1 MNKPMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFL 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  81 RTLHANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 161 LVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 241 IFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1896069881 321 INQSLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYYILNPIIMKMWDHLL 377
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 620.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   1 MNKPMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFL 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  81 RTLHANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 161 LVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 241 IFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1896069881 321 INQSLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYF-LYYILNPIIMKMWDHLLN 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFtILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 5-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 616.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   5 MRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  85 ANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 165 VWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 245 LLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQS 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1896069881 325 LFWSMTSIVILLTWIGARPVEDPYILIGQILTILYF-LYYILNPI 368
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFsLFLVLMPL 368
CYTB MTH00074
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 610.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   1 MNKPMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFL 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  81 RTLHANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 161 LVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 241 IFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1896069881 321 INQSLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYYILNPIIMKMWDHLL 377
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 610.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   5 MRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  85 ANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 165 VWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 245 LLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQS 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896069881 325 LFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYYIL 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 4-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   4 PMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTL 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  84 HANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 164 WVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 244 SLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896069881 324 SLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYF-LYYILNPIIMKMWDHLL 377
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFlIILILMPIASLIENNLL 377
CYTB MTH00034
cytochrome b; Validated
 4-369 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 570.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   4 PMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTL 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  84 HANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 164 WVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFL 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 244 SLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1896069881 324 SLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYF-LYYILNPII 369
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFsLFLFFFPLI 369
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 527.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   1 MNKPMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFL 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  81 RTLHANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 161 LVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 241 IFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1896069881 321 INQSLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYYILNPIIMKMWDHLLN 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-378 8.68e-180

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 504.23  E-value: 8.68e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   4 PMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTL 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  84 HANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 164 WVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFL 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 244 SLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896069881 324 SLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYY-ILNPIIMKMWDHLLN 378
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFlVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-378 1.91e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 498.08  E-value: 1.91e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881   1 MNKPMRISHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFL 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  81 RTLHANGASFFFICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 161 LVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 241 IFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1896069881 321 INQSLFWSMTSIVILLTWIGARPVEDPYILIGQILTILYFLYY-ILNPIIMKMWDHLLN 378
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFlILMPLAGYLENKLLK 379
CYTB MTH00033
cytochrome b; Provisional
 17-365 4.31e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 388.53  E-value: 4.31e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  17 NALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  97 LHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 177 TRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSlLEPY---LLGD 253
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 254 PDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFWSMTSIV 333
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1896069881 334 ILLTWIGARPV-EDPYILIGQILTILYFLYYIL 365
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 16-365 2.64e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 359.64  E-value: 2.64e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  16 NNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICL 95
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  96 YLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNAT 175
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 176 LTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGfIVMTALLIFLSLLEPYLLGDPD 255
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 256 NFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNfrgLQFYPINQSLFWSMTSIVIL 335
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYT---SCLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|
gi 1896069881 336 LTWIGARPVEDPYILIGQILTILYFLYYIL 365
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 1.28e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.49  E-value: 1.28e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  17 NALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLY 96
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  97 LHVGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNA 174
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 175 TLTRFFTFH-FVLPFIVAAFAMIHLLFLHQTGSNNPLG----LNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPy 249
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 250 lLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFW 327
Cdd:COG1290   264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1896069881 328 SMTSIVILLTWIGARPveDPYILIGQILTILYFLYYIL 365
Cdd:COG1290   343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.50e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.84  E-value: 6.50e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  10 PLFKIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  90 FFFICLYLHVGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1896069881 168 GFAVDNATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-358 1.53e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 263.38  E-value: 1.53e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  13 KIANNALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFF 92
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  93 ICLYLHVGRGMYYESYNYMHTWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVD 172
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 173 NATLTRFFTFHFVLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNI-DKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPYLL 251
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGviaLAFSIAILFILPFCTNHNfrGLQFYPINQSLFWSMTS 331
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLFFLWVPTFNG--SSVYSVWRQVNFWLIVS 317

                         330       340
                  ....*....|....*....|....*..
gi 1896069881 332 IVILLTWIGARPVEDPYILIGQILTIL 358
Cdd:MTH00046  318 LFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.81e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 241.90  E-value: 1.81e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  19 LVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  99 VGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1896069881 177 TRFFTFHFVLPFIVAAFAMIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 7.69e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 156.65  E-value: 7.69e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 208 NPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSLLEPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896069881 288 KLGGVIALAFSIAILFILPFCTNHNFRGlQFYPINQSLFWSMTSIVILLTWIGARPVEDPYILIGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 9.83e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 157.02  E-value: 9.83e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  89 SFFFICLYLHVGRGMYYESYNYMH--TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 167 GGFAVDNATLTRFFTFHF-VLPFIVAAFAMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDIVGFIVMTALLIFLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1896069881 246 LEPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.71e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 135.68  E-value: 1.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHNFRGLQFYPINQSLFWSMTSIVILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1896069881 339 IGARPVEDPYILIGQILTILY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 8.63e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 130.22  E-value: 8.63e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  34 FGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLYLHVGRGMYYESYNYMH- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 113 -TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIV 190
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1896069881 191 AAFAMIHLLFLHQTGSNNPL 210
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 3.03e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 117.90  E-value: 3.03e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881  25 PSNISAWWNFGSLLGLCLIIQIATGLFLAMHFTAHIDMAFNTVAHICRDVNYGWFLRTLHANGASFFFICLYLHVGRgmY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--V 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 105 YESYNYMH----TWMVGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLTRFF 180
Cdd:CHL00070  105 YLTGGFKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1896069881 181 TFH-FVLPFIVAAFAMIHLLFLHQTGSNNPL 210
Cdd:CHL00070  185 SLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 238-341 2.01e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 70.42  E-value: 2.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 238 ALLIFLSLLEPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHN-FRGL 316
Cdd:CHL00058   49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNkFQNP 123

                          90       100
                  ....*....|....*....|....*
gi 1896069881 317 QFYPINQSLFWSMTSIVILLTwIGA 341
Cdd:CHL00058  124 FRRPVATTVFLIGTAVALWLG-IGA 147
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 238-350 4.12e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 66.74  E-value: 4.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 238 ALLIFLSLLEPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHN-FRGL 316
Cdd:COG5679    50 ALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNkFQNP 124

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1896069881 317 QFYPINQSLFwSMTSIVILLTWIGAR-PVEDPYIL 350
Cdd:COG5679   125 FRRPVATAVF-LFGTLVTLWLGIGAAlPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-345 9.24e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 9.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069881 238 ALLIFLSLLEPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALAFSIAILFILPFCTNHN-FRGL 316
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNP 123

                          90       100
                  ....*....|....*....|....*....
gi 1896069881 317 QFYPINQSLFWSMTSIVILLTWIGARPVE 345
Cdd:TIGR01156 124 FRRPVATTVFLFGTVVALWLGIGATLPID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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