NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1896068862|gb|QNJ46621|]
View 

cytochrome b, partial (mitochondrion) [Cercospora kikuchii]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-208 1.99e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 294.77  E-value: 1.99e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00156  103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00156  183 VMIHLLFLHQT-GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPE 261

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00156  262 WYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYP 309
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-208 1.99e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 294.77  E-value: 1.99e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00156  103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00156  183 VMIHLLFLHQT-GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPE 261

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00156  262 WYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYP 309
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-208 9.10e-71

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 220.05  E-value: 9.10e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALH-FVLPFVLAA 79
Cdd:COG1290   124 WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  80 LALMHLIALHdSAGSGNPLGVSG----NYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNvlGDSENYVVANPMQTPP 155
Cdd:COG1290   204 LVVLHLWLLH-RHGHNNPPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPA 280

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896068862 156 AIVPEWYLLPFYAILRSIP--NKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:COG1290   281 HIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-94 6.51e-37

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 127.48  E-value: 6.51e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:cd00284   107 WVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVI 186

                          90
                  ....*....|....
gi 1896068862  81 ALMHLIALHDSAGS 94
Cdd:cd00284   187 VILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-89 1.19e-32

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 116.33  E-value: 1.19e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:pfam00033  98 WVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAIL 177


                  ....*....
gi 1896068862  81 ALMHLIALH 89
Cdd:pfam00033 178 MLLHLLFLH 186
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 117-195 2.71e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 2.71e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896068862 117 DLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPF 195
Cdd:TIGR01156  35 DLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-208 1.99e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 294.77  E-value: 1.99e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00156  103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00156  183 VMIHLLFLHQT-GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPE 261

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00156  262 WYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYP 309
CYTB MTH00119
cytochrome b; Provisional
 1-208 1.84e-98

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 290.65  E-value: 1.84e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00119  114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00119  194 TLIHLLFLHET-GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPE 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00119  273 WYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
CYTB MTH00191
cytochrome b; Provisional
 1-208 7.33e-94

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 278.34  E-value: 7.33e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00191  110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAAL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00191  190 SLIHLLFLHET-GSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPE 268

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00191  269 WYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRP 316
CYTB MTH00145
cytochrome b; Provisional
 1-208 7.76e-94

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 278.71  E-value: 7.76e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00145  114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00145  194 SVLHLLFLHET-GSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPE 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00145  273 WYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320
CYTB MTH00100
cytochrome b; Provisional
 1-208 8.31e-92

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 273.44  E-value: 8.31e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00100  113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00100  193 AMVHLLFLHET-GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00100  272 WYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRP 319
CYTB MTH00016
cytochrome b; Validated
 1-208 1.27e-90

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 270.40  E-value: 1.27e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00016  114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAAL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00016  194 SMIHLLFLHQT-GSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPE 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00016  273 WYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
CYTB MTH00131
cytochrome b; Provisional
 1-208 2.25e-89

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 267.29  E-value: 2.25e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00131  113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00131  193 TILHLLFLHET-GSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPE 271

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00131  272 WYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319
CYTB MTH00022
cytochrome b; Validated
 1-208 2.66e-87

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 261.94  E-value: 2.66e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00022  112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFL 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHdSAGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00022  192 VIVHLIYLH-VDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00022  271 WYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRP 318
CYTB MTH00053
cytochrome b; Provisional
 1-208 5.41e-86

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 258.87  E-value: 5.41e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00053  114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00053  194 ALVHLIALHED-GSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPE 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00053  273 WYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
CYTB MTH00074
cytochrome b; Provisional
 1-208 6.94e-85

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 255.76  E-value: 6.94e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00074  114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00074  194 SIIHLLFLHET-GSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPE 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00074  273 WYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320
CYTB MTH00034
cytochrome b; Validated
 1-208 2.26e-82

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 249.62  E-value: 2.26e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00034  113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00034  193 SIIHLLFLHQT-GSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPE 271

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00034  272 WYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRP 319
CYTB MTH00224
cytochrome b; Provisional
 1-208 6.90e-77

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 235.59  E-value: 6.90e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00224  114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00224  194 TILHIMFLHQT-GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPE 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00224  273 WYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-208 9.10e-71

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 220.05  E-value: 9.10e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALH-FVLPFVLAA 79
Cdd:COG1290   124 WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  80 LALMHLIALHdSAGSGNPLGVSG----NYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNvlGDSENYVVANPMQTPP 155
Cdd:COG1290   204 LVVLHLWLLH-RHGHNNPPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPA 280

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896068862 156 AIVPEWYLLPFYAILRSIP--NKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:COG1290   281 HIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335
CYTB MTH00086
cytochrome b; Provisional
 1-195 9.87e-67

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 208.64  E-value: 9.87e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00086  102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVL 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHdSAGSGNPLGVSGNYDRLPFAPYFIFKDLITIFlFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPE 160
Cdd:MTH00086  182 VLFHLIFLH-STGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPE 259

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1896068862 161 WYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPF 195
Cdd:MTH00086  260 WYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIF 294
CYTB MTH00033
cytochrome b; Provisional
 1-208 1.35e-61

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 196.31  E-value: 1.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00033  110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITiFLFIIVLSVFVFFMPNV---LGDSENYVVANPMQTPPAI 157
Cdd:MTH00033  190 VLAHLLTLHEK-GSNEPLGLVGLSDRTAFHVYFTIKDILG-FLILFGVFVIIGIEPRIetlLQDPENFIQANPLVTPVHI 267

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1896068862 158 VPEWYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:MTH00033  268 QPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNP 318
CYTB MTH00046
cytochrome b; Validated
 1-190 8.34e-50

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 165.16  E-value: 8.34e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:MTH00046  104 WNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  81 ALMHLIALHDSaGSGNPLGVSGNY-DRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVP 159
Cdd:MTH00046  184 MVVHLFYLHKS-GSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKP 262

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1896068862 160 EWYLLPFYAILRSIPNKLLGVIAMFSAILII 190
Cdd:MTH00046  263 EWYFLAFYAMLRSINSKIGGLVLVLSFLFFL 293
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-94 6.51e-37

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 127.48  E-value: 6.51e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:cd00284   107 WVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVI 186

                          90
                  ....*....|....
gi 1896068862  81 ALMHLIALHDSAGS 94
Cdd:cd00284   187 VILHLLFLHEQGSS 200
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 96-208 9.63e-37

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 125.45  E-value: 9.63e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  96 NPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPEWYLLPFYAILRSIPN 175
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1896068862 176 KLLGVIAMFSAILIILTMPFTDLGRSRGlQFRP 208
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRP 112
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-89 1.19e-32

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 116.33  E-value: 1.19e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHFVLPFVLAAL 80
Cdd:pfam00033  98 WVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAIL 177


                  ....*....
gi 1896068862  81 ALMHLIALH 89
Cdd:pfam00033 178 MLLHLLFLH 186
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-141 1.01e-30

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 110.41  E-value: 1.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALHF-VLPFVLAA 79
Cdd:pfam13631  28 WIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILA 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896068862  80 LALMHLIALHDSaGSGNPLGVSGNYDRLPFAPYFIFKDLITIFLFIIVLSVFVFFMPNVLGD 141
Cdd:pfam13631 108 LIVAHLLLVEKH-GQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLGG 168
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
148-208 4.51e-26

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 96.39  E-value: 4.51e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896068862 148 ANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFTDLGRSRGLQFRP 208
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRP 62
PRK03735 PRK03735
cytochrome b6; Provisional
 1-95 1.15e-19

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.22  E-value: 1.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALH-FVLPFVLAA 79
Cdd:PRK03735  126 WVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAV 205

                          90
                  ....*....|....*.
gi 1896068862  80 LALMHLIALHDSAGSG 95
Cdd:PRK03735  206 LMLAHFLMIRKQGISG 221
petB CHL00070
cytochrome b6
 1-95 5.67e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 75.91  E-value: 5.67e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862   1 WTIGTIILVLMMATAFLGYVLPYGQMSLWAATVITNLMSAIPWVGQDIVEFLWGGFSVNNATLNRFFALH-FVLPFVLAA 79
Cdd:CHL00070  118 WVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAV 197

                          90
                  ....*....|....*.
gi 1896068862  80 LALMHLIALHDSAGSG 95
Cdd:CHL00070  198 FMLMHFLMIRKQGISG 213
petD CHL00058
cytochrome b6/f complex subunit IV
 117-197 3.56e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.94  E-value: 3.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862 117 DLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPFT 196
Cdd:CHL00058   35 DLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFL 114


                  .
gi 1896068862 197 D 197
Cdd:CHL00058  115 E 115
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 97-195 2.39e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.42  E-value: 2.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896068862  97 PLGVSGNYDRLPFAPyfifKDLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPEWYLLPFYAILRSIPNK 176
Cdd:COG5679    20 EKGMGHNYYGEPAWP----NDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLYPVFQILRVVPNK 95

                          90
                  ....*....|....*....
gi 1896068862 177 LLGVIAMFSAILIILTMPF 195
Cdd:COG5679    96 LLGIVMMAAIPLGLMLVPF 114
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 117-195 2.71e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 2.71e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896068862 117 DLITIFLFIIVLSVFVFFMPNVLGDSENYVVANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFSAILIILTMPF 195
Cdd:TIGR01156  35 DLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH