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Conserved domains on  [gi|1896034184|ref|WP_186437837|]
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MULTISPECIES: DUF5412 family protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5412 super family cl38703
Family of unknown function (DUF5412); This is a family of unknown function found in Bacteria. ...
 2-108 8.47e-33

Family of unknown function (DUF5412); This is a family of unknown function found in Bacteria. Members of this family have one or two predicted trans-membrane regions.


The actual alignment was detected with superfamily member pfam17428:

Pssm-ID: 435910  Cd Length: 118  Bit Score: 111.28  E-value: 8.47e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896034184   2 FALLVFFGGAIYWMLFSLKNVPKGNLVQSVESPDGSYTLNTY-VSENTLSLDAARGELVNEKTLVKRTIYWNYPDSRPAV 80
Cdd:pfam17428  12 LLLVILIGIGIYWKFFSLQRLPKGELITTSDSPNGTYTVNAYlNNGGATTSYAVRGELVNNKTSKSKNIYWNYREEDAKI 91

                          90       100
                  ....*....|....*....|....*...
gi 1896034184  81 TWVNHHTVKIGNQTLHLDTDeTYDWRKD 108
Cdd:pfam17428  92 EWIDDDTVIINGQELNVLTD-TYDYRYD 118
 
Name Accession Description Interval E-value
DUF5412 pfam17428
Family of unknown function (DUF5412); This is a family of unknown function found in Bacteria. ...
 2-108 8.47e-33

Family of unknown function (DUF5412); This is a family of unknown function found in Bacteria. Members of this family have one or two predicted trans-membrane regions.


Pssm-ID: 435910  Cd Length: 118  Bit Score: 111.28  E-value: 8.47e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896034184   2 FALLVFFGGAIYWMLFSLKNVPKGNLVQSVESPDGSYTLNTY-VSENTLSLDAARGELVNEKTLVKRTIYWNYPDSRPAV 80
Cdd:pfam17428  12 LLLVILIGIGIYWKFFSLQRLPKGELITTSDSPNGTYTVNAYlNNGGATTSYAVRGELVNNKTSKSKNIYWNYREEDAKI 91

                          90       100
                  ....*....|....*....|....*...
gi 1896034184  81 TWVNHHTVKIGNQTLHLDTDeTYDWRKD 108
Cdd:pfam17428  92 EWIDDDTVIINGQELNVLTD-TYDYRYD 118
 
Name Accession Description Interval E-value
DUF5412 pfam17428
Family of unknown function (DUF5412); This is a family of unknown function found in Bacteria. ...
 2-108 8.47e-33

Family of unknown function (DUF5412); This is a family of unknown function found in Bacteria. Members of this family have one or two predicted trans-membrane regions.


Pssm-ID: 435910  Cd Length: 118  Bit Score: 111.28  E-value: 8.47e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896034184   2 FALLVFFGGAIYWMLFSLKNVPKGNLVQSVESPDGSYTLNTY-VSENTLSLDAARGELVNEKTLVKRTIYWNYPDSRPAV 80
Cdd:pfam17428  12 LLLVILIGIGIYWKFFSLQRLPKGELITTSDSPNGTYTVNAYlNNGGATTSYAVRGELVNNKTSKSKNIYWNYREEDAKI 91

                          90       100
                  ....*....|....*....|....*...
gi 1896034184  81 TWVNHHTVKIGNQTLHLDTDeTYDWRKD 108
Cdd:pfam17428  92 EWIDDDTVIINGQELNVLTD-TYDYRYD 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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