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Conserved domains on  [gi|1893884565|gb|QNH73688|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Turdinus atrigularis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-158

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 446.96  E-value: 2.86e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGQWDVTQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 161 STALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1893884565 321 TNTTIAILTVASTTLLPISPMISTLT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-158

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 446.96  E-value: 2.86e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGQWDVTQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 161 STALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1893884565 321 TNTTIAILTVASTTLLPISPMISTLT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.89e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 5.89e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  23 SNHWITAWAGLEINTLAVLPLI-SKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMK------LPPMSLLIMTSHSLNQTVLTSLALLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 165 GGWMGLNQTQTRKILAFSSISHLGWMTIIIS----YSPKLALLNFYLYALMTATVFLTLNS-----TKTFNLTTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1893884565 236 KNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.51e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.44  E-value: 1.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLILF--------------SAMTNA 78
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  79 WHTGQWDVTQLThpTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPMSLLIMTSHSLN---Q 151
Cdd:COG1007   192 LAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAadwQ 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 152 TVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLAL--LNFYL--YALMTATVF--LTLNSTKTF 225
Cdd:COG1007   270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFavILLLSRKGG 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1893884565 226 NLTTLMT---TWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAY 298
Cdd:COG1007   350 EAEEIEDlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 8.86e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 107.34  E-value: 8.86e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLI-------MTSHSLNQTV 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 154 LTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGW--MTIIISYSPKLALLNFYL--YALMTATVFLTLNSTKTFN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1893884565 227 ---LTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-158

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 446.96  E-value: 2.86e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGQWDVTQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 161 STALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1893884565 321 TNTTIAILTVASTTLLPISPMISTLT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 8-346 9.95e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 379.53  E-value: 9.95e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   8 IFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVT 87
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  88 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSlNQTVLTSLALLSTALGGW 167
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 168 MGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPALNAMLLLT 247
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 248 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTPTNTT-IA 326
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLA 326

                         330       340
                  ....*....|....*....|
gi 1893884565 327 ILTVASTTLLPISPMISTLT 346
Cdd:MTH00135  327 ISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 6.47e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 377.34  E-value: 6.47e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGQWDVTQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 161 STALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1893884565 321 TNTTIAILTVASTTLLPISPMISTL 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 7-346 7.80e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 339.13  E-value: 7.80e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   7 LIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDV 86
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALLSTALGG 166
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 167 WMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPALNAMLLL 246
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTN-HMKRWHTNTPTNTTI 325
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENTKPMTLL 326

                         330       340
                  ....*....|....*....|.
gi 1893884565 326 AILTVASTTLLPISPMISTLT 346
Cdd:MTH00105  327 PTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 7-346 8.75e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.72  E-value: 8.75e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   7 LIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDV 86
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALLSTALGG 166
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 167 WMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPALNAMLLL 246
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTPTNTTIA 326
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330       340
                  ....*....|....*....|
gi 1893884565 327 ILTVASTTLLPISPMISTLT 346
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-336 9.72e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 259.86  E-value: 9.72e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   7 LIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDV 86
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALLSTALGG 166
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 167 WMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPALNAMLLL 246
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 247 TLLSLAGLPPLTGFLPKWLIIQELTKQD-MAPAAVMIsLLSLLSLFFYLRLAYCATITLPPHTTNHMKRWHTNTPTNTTI 325
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNsILISIILI-IGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYG 325

                         330
                  ....*....|.
gi 1893884565 326 AILTVASTTLL 336
Cdd:MTH00041  326 VILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 6.99e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 193.12  E-value: 6.99e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWH 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGqwdvtqLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLimtSHSLNQTVLTSLALL 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 161 STALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCAtITLPPHTTNHMKRWHTNTp 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNK- 310

                         330       340
                  ....*....|....*....|....*
gi 1893884565 321 TNTTIAILTVASTTLLPISPMISTL 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-302 1.48e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.52  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWH 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGQWDVTqlthptscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLN-QTVLTSLAL 159
Cdd:MTH00144   81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlAYLLCVISV 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 160 LSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLmtTWTKNPA 239
Cdd:MTH00144  153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSY 230

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1893884565 240 LNAMLLLTLLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYCATI 302
Cdd:MTH00144  231 KTGLSIISLLLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-340 4.49e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.56  E-value: 4.49e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   1 MTSQAKLIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAmtnawh 80
Cdd:MTH00011    3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------ 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  81 TGQWDVTQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLALL 160
Cdd:MTH00011   77 TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 161 STALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPAL 240
Cdd:MTH00011  157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAYcATITLPPHTTNhmkrwHTNTP 320
Cdd:MTH00011  237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAP 310

                         330       340
                  ....*....|....*....|
gi 1893884565 321 TNTTIAILTVASTTLLPISP 340
Cdd:MTH00011  311 YEPKTKILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 2.38e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.04  E-value: 2.38e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   8 IFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTgqwdvt 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  88 qLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLnqTVLTSLALLSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 168 MGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTlMTTWTKNPALNAMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1893884565 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAY 298
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.89e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 5.89e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  23 SNHWITAWAGLEINTLAVLPLI-SKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMK------LPPMSLLIMTSHSLNQTVLTSLALLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 165 GGWMGLNQTQTRKILAFSSISHLGWMTIIIS----YSPKLALLNFYLYALMTATVFLTLNS-----TKTFNLTTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1893884565 236 KNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.64e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 112.43  E-value: 3.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLI-SKSHHPRSIEAATKYFLTQAAASTLILFS-------------AMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  79 WHTGQWDVTQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLImtSHSLNQTVLTSLA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 159 LLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISY----SPKLALLNFYLYALMTATVF---LTLNSTKTFnLTTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1893884565 232 TTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.00e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.84  E-value: 2.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLIL--------------FSAMTNA 78
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  79 WHTGQWDVTQLThpTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLI-------MTSHSLNQ 151
Cdd:PRK05777  193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQ 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 152 TVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLAL--LNFYL--YALMTATVF--LTLNSTKTF 225
Cdd:PRK05777  271 QVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGG 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1893884565 226 NLTTLmTTWT----KNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRL 296
Cdd:PRK05777  351 EAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.51e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.44  E-value: 1.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLILF--------------SAMTNA 78
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  79 WHTGQWDVTQLThpTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPMSLLIMTSHSLN---Q 151
Cdd:COG1007   192 LAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAadwQ 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 152 TVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLAL--LNFYL--YALMTATVF--LTLNSTKTF 225
Cdd:COG1007   270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFavILLLSRKGG 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1893884565 226 NLTTLMT---TWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAY 298
Cdd:COG1007   350 EAEEIEDlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 8.86e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 107.34  E-value: 8.86e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLI-------MTSHSLNQTV 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 154 LTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGW--MTIIISYSPKLALLNFYL--YALMTATVFLTLNSTKTFN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1893884565 227 ---LTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 8.83e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 101.63  E-value: 8.83e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDV----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  88 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNqtVLTSLALLSTALGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 168 MGLNQTQTRKILAFSSISHLG---WMTIIISY-SPKLALLNFYLYALMTATVF---LTLNSTKTFnLTTLMTTWTKNPAL 240
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 1893884565 241 NAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 1.30e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 1.30e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQLTH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  92 ---------PTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVM-KLPPMSLLIM-------TSHSLNQTVL 154
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILRVltllfgaDPALFLGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 155 TSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLY----ALMTATVFLT----LNSTKTFN 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1893884565 227 LTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMI 282
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 9.87e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.98  E-value: 9.87e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  15 LGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSI---------EAATKYFLTQAAASTLILFSAMTNAWHTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  84 --WDVTQLTHPTS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLppMSLLIMTSHSLNQ 151
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 152 TVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLY-------ALMTATVFLTL----- 219
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALASFTVICTLeefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1893884565 220 -------------NSTKTFNLTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 1.42e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.19  E-value: 1.42e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   7 LIFMTSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHP-RSIEAATKYFLTQAAASTLIL--FSAM--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  82 GQWDV------TQLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLL-----IMTS 146
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALAtrifdIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 147 HSLNQ--TVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTI-IIS------YSPKLALLNFYLYALMTATVFL 217
Cdd:CHL00049  274 FSSNEwhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVgdsndgYASMITYMLFYIFMNLGTFACI 353

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1893884565 218 TLNS--TKTFNLTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  354 VLFGlrTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 3.51e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.92  E-value: 3.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  50 PRSIEAATKYFLTQAAASTLILF---------------SAMTNAWHTGQWDVTQLthptSCLILTSAIAMKLGLVPFHFW 114
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggstqlSAIALALITSPSLGLAL----ALVFVIAGIAFKISAVPFHQW 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 115 FPEVLQGSPLTTGLLLSTVMKLPPMSL---LIMTSHSLN----QTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK02504  233 TPDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312


                  ....*
gi 1893884565 188 GWMTI 192
Cdd:PRK02504  313 GFVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 7.51e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.09  E-value: 7.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  49 HPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQW--DVTQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 119 LQGSPLTTGLLLSTVM-KLP-------PMSLLIMTSHSLNQTVLTsLALLSTALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1893884565 191 TI 192
Cdd:COG1008   315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.29e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 3.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  33 LEINTLAVLPLIS-KSHHPRSIEAATKYFLTQAAASTLILFSAmtnAWHTGQWDV-------------TQLTHPTSCLIL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  99 TSAIAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTVMKLPPMSLLIMT--SHSLNQT----VLTSLALLSTALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 171 NQTQTRKILAFSSISHLGWMTI-----IISYSPKL-----------ALLNFYLYALMTATVFLT----LNSTKTFNLTTL 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALGDPAmasygeialagGIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1893884565 231 MTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 3.50e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 57.97  E-value: 3.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  33 LEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFS-AMTNAwHTGQWDVTQL--------THPTSCLILTSAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTVMKLP--PMSLLIMT-------SHSLNQTVLTSLALLSTALGGWMGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 174 QTRKILAFSSISHLGWMTIIISYSPKLALLN--FYL--YALMTATVFLTLNS----TKTFNLTTLMTTWTKNPALNAMLL 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAievtYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1893884565 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 9.83e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 56.30  E-value: 9.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAA------STLILFSAMTNAWHTGQWDV 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  87 TQLTHPT----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQT---- 152
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1893884565 153 ----VLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLYALMTATVFLTL 219
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-282 1.99e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.77  E-value: 1.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  23 SNHWITAWAGLEINTLAVLPLISKSHHpRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVT-------QLTHPTSC 95
Cdd:PRK08668  117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFA 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  96 LI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMK-------------LPPMSLLI----MTSHSLNQTVL 154
Cdd:PRK08668  196 LIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLPGTKLFSefgtYRGVPLFNYIL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 155 TSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIII----SYSPKLALLNFYLYALMTATVFLTLNS----TKTFN 226
Cdd:PRK08668  276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLglgtSLGFAGGLFHVFNHALFKGLFFLIFAAviyrTGTTK 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1893884565 227 LTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMI 282
Cdd:PRK08668  356 ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.06e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.02  E-value: 1.06e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1893884565 291 FFYLRLAYCATITLPPHTTNHMKRWHTNTPTNTT-IAILTVASTTLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 2.44e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 2.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  50 PRSIEAATKYFLTQAAASTLILFSAMTNAWHTG------QWDVTQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 121 GSPLTTGLLLS-TVMKLPPMSLL-----IMTSHSLN-QTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTII 193
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLrfnlpLFPDASLYfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 1893884565 194 I 194
Cdd:TIGR01972 312 I 312
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 4.16e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 4.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTVM---------KLPPMsllIMTSHSLNQTVLTsLALLSTALGG 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 167 WMGLNQTQTRKILAFSSISHLGWMTIIISY-SPKLALLNFYL---YALMTATVFLTL----NSTKTFNLTTLMTTWTKNP 238
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMllaHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQP 362

                         170       180
                  ....*....|....*....|....*
gi 1893884565 239 ALNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  363 VLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 2.54e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 2.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   8 IFMTSLLLgttiTISSNHWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYF---------------LTQAAASTLILF 72
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  73 SAMTNAWhTGQWDVTQLTHPTsclILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVmkLPPMSLL--- 142
Cdd:PRK06458  192 GEMAILW-TELLKHASLLDPT---LMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavl 265

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1893884565 143 ---IMTSHSLN----QTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK06458  266 ryyILIDAAIGsdfpGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.85e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 3.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  50 PRSIEAATKYFLTQAAASTLILFS----AMTNAWHTGQWDVTQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 118 VLQGSPLTTGLLLSTVM-----------KLPpmsLLIMTSHSLnQTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEF-APIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                  ....*...
gi 1893884565 187 LGWMTIII 194
Cdd:PRK05846  313 MGFVTLGI 320
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 9.66e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.92  E-value: 9.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  55 AATKYFLTQAAASTLILFSAMTNAWHTG-------QWDVTQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 124 LTTGLLLSTVMKLPPMSLL------IMTSHSLNQTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIISYS 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 1893884565 198 PKLALL 203
Cdd:PRK06473  318 TPLSIL 323
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 34-195 9.71e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 9.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  34 EINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQ--WDVTQLTH---PTSCLILTSA---IA-- 103
Cdd:PRK12561  117 ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYAgflIAfg 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 104 MKLGLVPFHFWFPEV-----LQGSPLTTGLLLstvmKLPPMSLLIMT------SHSLNQTVLTSLALLSTALGGWMGLNQ 172
Cdd:PRK12561  197 VKLPIFPLHTWLPDAhgeasAPVSMILAGVLL----KMGGYALIRFNvqmlpdAHVYFAPALAILGVVNIIYGALNAFAQ 272

                         170       180
                  ....*....|....*....|...
gi 1893884565 173 TQTRKILAFSSISHLGWMTIIIS 195
Cdd:PRK12561  273 DNVKRRLAYSSVSHMGFVLLGIA 295
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 1.22e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.75  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 109 VPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQTVLTSLAL-----LSTALGGWMGLNQTQTRKILAFSS 183
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLWQTILplfggLTMLTGALLAVRQTDLKLILAYST 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 184 ISHLGWMTIIISYSPKLALLNFYLY----ALMTATVFLTL----NSTKTFNLTTLMTTWTKNPALNAMLLLTLLSLAGLP 255
Cdd:PRK12647  292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAgiidHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLP 371

                         170
                  ....*....|.
gi 1893884565 256 PLTGFLPKWLI 266
Cdd:PRK12647  372 PLFGFLAKELI 382
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 2.05e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  33 LEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFS-----AMTNAWHTGqwDVTQLTHP--------TSCLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 100 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQT-----------VLTSLALLSTALGGWM 168
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKAnfvfttlpfnnVFMILAALAIVFGSVL 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 169 GLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLNFYLY----ALMTATVFLT-------LNSTKTFNLTTLmttWTKN 237
Cdd:PRK12662  297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKSM 373

                         250       260       270
                  ....*....|....*....|....*....|
gi 1893884565 238 PALNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  374 PKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12650 PRK12650
DUF4040 family protein;
80-263 2.44e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 2.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  80 HTGQW-DVTQLTHPTSCLILTSAIAmKLGLVPFHFWFPEVLQG-SPLTTGLLLSTVMKLPPMSLL----IMTSHSLNQTV 153
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrfspVFHDVAVWNWL 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 154 LTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTIIIS----YSPKLALLNFYLYALMTATVFLTL----NSTKTF 225
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGvgtpFALTAAVVHTLAHALFKSSLFMLIgvvdHQAGTR 354

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1893884565 226 NLTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-192 2.69e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   7 LIFMTSLLLgttiTISSNHWITAWAGLEINTLAVLPLISKSHH-PRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWD 85
Cdd:COG1009   118 LLFMAAMLG----LVLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  86 VTQL-----THPTSCLILTSAIAM------KLGLVPFHFWFPEVLQG----SPL-------TTGLLLstVMKLPPmsLLI 143
Cdd:COG1009   194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSP--LFA 269

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1893884565 144 MTSHSLnqTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:COG1009   270 LSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 2.69e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.63  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  33 LEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQLTH--PTSCLILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 111 FHFWFPEVLQGSPLTTGLLLS-TVMKLPPMSLLIMtSHSLNQT--VLTSLALLSTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRC-ALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 188 GWmtiiISYSPKLALLNFYLYALMTATVFLTLNSTKTFNLTTLMTTWTKNPaLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK07234  282 GF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIG-KWIPLTMASFSIAGFPLLAGFVSKVLTL 356


                  ....
gi 1893884565 268 QELT 271
Cdd:PRK07234  357 KNLL 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 4.63e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 4.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  34 EINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQ-----LTHPTSCLILTSAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 109 V------PFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLI--------MTSHSLNQTVLTSLALLSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 175 TRKILAFSSISHLGWMTIIISYSPKLALLNFYLYA----LMTATVFL----TLNSTKTFNLTTLMTTWTKNPALNAMLLL 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 1893884565 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-260 6.85e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 41.23  E-value: 6.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  55 AATKYFLTQAAASTLILFSAMTNAWHTG--QWDVTQLTH---PTSCLILTS-----AIAMKLGLVPFHFWFPEVLQGSPL 124
Cdd:PRK02546  166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAkdfGLGFQLLCYaglliAYGVKLPIVPLHTWLPDAHGEATA 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 125 TTGLLLSTVM-KLPPMSLLIMT------SHSLNQTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMTI-IISY 196
Cdd:PRK02546  246 PVHMLLAGILlKMGGYALLRMNagmlpdAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIgIGSF 325

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1893884565 197 SP---KLALLNFYLYALMTATVFL----TLNSTKTFNLTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGF 260
Cdd:PRK02546  326 TDlgtSGAMLQMISHGLIGASLFFlvgaTYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGF 396
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 7.72e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.48  E-value: 7.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMT-----SHSLNQTVLTSLALLSTALGGWMGLNQTQTRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 180 AFSSISHLGWMTIIISY--SPKLALLNFYLYALMTATVFLTLNS------TKTFNLTTLMTTWTKNPALNAMLLLTLLSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSvihsttVDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397

                         170       180
                  ....*....|....*....|
gi 1893884565 252 AGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032  398 MGLPYLTGFYSKDLIL-ELT 416
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 2.11e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  55 AATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQLTHPT-----SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 130 LSTVM-KLPPMSLL-----IMTSHSLNQTVLTSLALLSTALGGWMGLNQTQTRKILAFSSISHLG--------WMTIIIS 195
Cdd:PRK08667  243 MSGVMlKVAVYGLVrflmdVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 196 YSPKLALLNF-------YLYALMTATVFLTLNS----TKTFNLTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667  323 GLDTLALLALggalfhsLNHALFKSLLFLTAGSvvhaTGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*.
gi 1893884565 265 LIIQEL 270
Cdd:PRK08667  403 LLYESF 408
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.29e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.81  E-value: 2.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  48 HHPRSIEAATKYFLTQAAASTLILFSAMTNAWHTGQWDVTQLTHPTS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 113 FWFPEVLQGSPLTTGLLLSTVMKLPPMSLLIMTSHSLNQT-----VLTSLALLSTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 188 GWMTIIISYSPK------LALLNFYL--YALMTATVFLTL----NSTKTFNLTTLMTTWTKNPALNAMLLLTLLSLAGLP 255
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                  ....*...
gi 1893884565 256 PLTGFLPK 263
Cdd:PRK12649  395 PLNGFLSK 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-282 3.71e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.03  E-value: 3.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565   9 FMTSLLLGTTITISSNhWITAWAGLEINTLAVLPLISKSHHPRSIEAATKYFLTQAAASTLILFSAMT---NAWHTGQW- 84
Cdd:PRK06589  122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFv 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  85 DVTQLTHPTSCLILTSAIA--MKLGLVPFHFWFPEVLQGS-PLTTGLLLSTVMK---LPPMSLLIMTSHSLNQTV----- 153
Cdd:PRK06589  201 SGGLFSKNQSIILLLMFIYgiAKTAIFPVHSWLPAAMVAHyPVSALLHAVIVVKtglFCIYKILLYIFGLSYLQRifaef 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 154 --LTSLALLSTALGGWMGLNQTQTRKILAFSSISHLGWMT----IIISYSPKLALLNFYLYALMTATVFLTLNS----TK 223
Cdd:PRK06589  281 nwLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsafILTPKALGAAILHLVSHSFAKICLFYSMGSiyslKK 360

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1893884565 224 TFNLTTLMTTWTKNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVMI 282
Cdd:PRK06589  361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 70-218 6.49e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.39  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  70 ILFSAMTNAWHTGQWDVTQLTH-------PTSCLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPMSLL 142
Cdd:MTH00211  177 LLLSMVWLLLNLNSWEISQLFIlnldltlFLLGLLL--AAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLL 254

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 143 IMTSH--SLNQTVLTSLALL---STALGGWMGLNQTQTRKILAFSSISHLGWMTIIIS-YSPKLALLNFYLYALMTATVF 216
Cdd:MTH00211  255 IRLSPlfQNNQLILGAVLLLgalTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGlNQPQLAFLHICTHAFFKAMLF 334


                  ..
gi 1893884565 217 LT 218
Cdd:MTH00211  335 MC 336
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 7.19e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.01  E-value: 7.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565  92 PTSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTVMK-------LPPMSLLIMTSHSLNQTVLTSLALLSTAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893884565 165 GGWMGLNQTQTRKILAFSSISHLGWMTIIISYSPKLALLN--FYLY---ALMTAtVFLTLNS----TKTFNLTTLMTTWT 235
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVhdmVVKTA-LFLIAGSlvrlTGYRSLQYLGGLYR 364

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1893884565 236 KNPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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