NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|189339093|dbj|BAG48157|]
View 

hypothetical protein [Staphylococcus phage phiMR25]

Protein Classification

phage baseplate upper protein( domain architecture ID 10566359)

phage baseplate upper protein (BppU) is a component of the baseplate assembly such as in Lactococcus lactis phage TP901-1, where the baseplate is formed by 18 copies of BppU, which are arranged around a central Dit hexamer and hold 54 receptor-binding proteins organized as 18 trimers

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BppU_N pfam10651
BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also ...
 11-160 3.19e-40

BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold.


:

Pssm-ID: 431419  Cd Length: 141  Bit Score: 143.23  E-value: 3.19e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189339093   11 NLIELQTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVKTSIVLKTDdynvdrGAYISDELTIVDAING 90
Cdd:pfam10651   1 YDITLDTTAQNNKIKQTGIRFRTGDSNTAVLNFKITKNGQPLDLTGLTAKFELVKPDD------GSIVSDELEILDAKKG 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189339093   91 RLQYVIPNEFLKHSGKVHAQAFFTQNGsNNVVVERQFSFNIENDLVSgfDGITKLVYIKSIQDTIEAVGK 160
Cdd:pfam10651  75 KFKYVLPEEVLKHVGKVKAYFSVFKED-DQVISTRNFSFNVEKSLVE--DGIVSSDYIEDFEDLIEEVTE 141
 
Name Accession Description Interval E-value
BppU_N pfam10651
BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also ...
 11-160 3.19e-40

BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold.


Pssm-ID: 431419  Cd Length: 141  Bit Score: 143.23  E-value: 3.19e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189339093   11 NLIELQTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVKTSIVLKTDdynvdrGAYISDELTIVDAING 90
Cdd:pfam10651   1 YDITLDTTAQNNKIKQTGIRFRTGDSNTAVLNFKITKNGQPLDLTGLTAKFELVKPDD------GSIVSDELEILDAKKG 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189339093   91 RLQYVIPNEFLKHSGKVHAQAFFTQNGsNNVVVERQFSFNIENDLVSgfDGITKLVYIKSIQDTIEAVGK 160
Cdd:pfam10651  75 KFKYVLPEEVLKHVGKVKAYFSVFKED-DQVISTRNFSFNVEKSLVE--DGIVSSDYIEDFEDLIEEVTE 141
 
Name Accession Description Interval E-value
BppU_N pfam10651
BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also ...
 11-160 3.19e-40

BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold.


Pssm-ID: 431419  Cd Length: 141  Bit Score: 143.23  E-value: 3.19e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189339093   11 NLIELQTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVKTSIVLKTDdynvdrGAYISDELTIVDAING 90
Cdd:pfam10651   1 YDITLDTTAQNNKIKQTGIRFRTGDSNTAVLNFKITKNGQPLDLTGLTAKFELVKPDD------GSIVSDELEILDAKKG 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189339093   91 RLQYVIPNEFLKHSGKVHAQAFFTQNGsNNVVVERQFSFNIENDLVSgfDGITKLVYIKSIQDTIEAVGK 160
Cdd:pfam10651  75 KFKYVLPEEVLKHVGKVKAYFSVFKED-DQVISTRNFSFNVEKSLVE--DGIVSSDYIEDFEDLIEEVTE 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH