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Conserved domains on  [gi|1891133879|gb|QNF60313|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Chlorophonia occipitalis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.33e-166

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.61  E-value: 4.33e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1891133879 321 TSILIAILTTMSVILLPISPMISAII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.33e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.61  E-value: 4.33e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1891133879 321 TSILIAILTTMSVILLPISPMISAII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.68e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 4.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHPV-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  94 ---SGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIM-KLPPI-----TLLYMTSQSLNPTLLTTMAILSTAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIL----IYDPKLTLLNFYLYTMMTAAVFLTMNSI-----KVQNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1891133879 236 KIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-298 2.63e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 2.63e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  12 SLLLGSTITM----SSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWD 85
Cdd:COG1007   106 ALLLFATLGMmlmaSANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  86 ITQLSHPVS-----------GLVLT-SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKL----PPITLLYMTSQSL 149
Cdd:COG1007   185 LAGIAAALAagganspllllGLVLVlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 150 NP---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTL--LNFYL--YTMMTAAVFLTMNSI 222
Cdd:COG1007   265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 223 K-----VQNLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLA 297
Cdd:COG1007   345 SrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                  .
gi 1891133879 298 Y 298
Cdd:COG1007   425 K 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.49e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 89.24  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  14 LLGSTITMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  93 VSGLVLT------------SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLP---PITLLYMTSQS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLN--FYL--YTMMTAAVFLTMNSIKVQN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1891133879 227 ---LSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.33e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.61  E-value: 4.33e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1891133879 321 TSILIAILTTMSVILLPISPMISAII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 8.27e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 397.64  E-value: 8.27e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSlNPTLLTTMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1891133879 321 -TSILIAILTTMSVILLPISPMISAII 346
Cdd:MTH00135  320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 9.24e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 387.35  E-value: 9.24e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1891133879 321 TSILIAILTTMSVILLPISPMISAII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 2.85e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.59  E-value: 2.85e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*
gi 1891133879 319 KPTSILIAILTTMSVILLPISPMIS 343
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.40e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 289.18  E-value: 3.40e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1891133879 321 TSILIAILTTMSVILLPISPMISAII 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-336 4.22e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.92  E-value: 4.22e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   7 LVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  87 TQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAILSTALGG 166
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 167 WMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPALNAMLLL 246
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 247 TLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTSILIA 326
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                         330
                  ....*....|
gi 1891133879 327 ILTTMSVILL 336
Cdd:MTH00041  327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 2.72e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 183.87  E-value: 2.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 tgqwdITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTsqsLNPTLLTTMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|..
gi 1891133879 321 TSILIaILTTMSVILLPISPMI 342
Cdd:MTH00160  312 SLILN-FLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-302 9.99e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 153.12  E-value: 9.99e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  81 TGQWDitqlshpvSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNP-TLLTTMAI 159
Cdd:MTH00144   81 SFSWF--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISV 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 160 LSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTlMTAWTKIPA 239
Cdd:MTH00144  153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYK 231

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1891133879 240 LNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144  232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 2.28e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.63  E-value: 2.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   7 LVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  87 TQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTTMAILSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 167 WMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPALNAMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 247 TLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYcTTITLPPHTTNhmkqwRTNKPTSILIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                         330
                  ....*....|....
gi 1891133879 327 ILTTMSVILLPISP 340
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 1.45e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.02  E-value: 1.45e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   8 VFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  88 qLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLymTSQSLNPTLLTTMAILSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 168 MGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQNLSTLMTAWTKIPALNAMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 248 LLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWRTNKPTSILIAI 327
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLFI 308

                         330
                  ....*....|....*
gi 1891133879 328 LTTMSVILLPISPMI 342
Cdd:MTH00197  309 LLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.68e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 4.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHPV-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  94 ---SGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIM-KLPPI-----TLLYMTSQSLNPTLLTTMAILSTAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIL----IYDPKLTLLNFYLYTMMTAAVFLTMNSI-----KVQNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1891133879 236 KIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-298 2.63e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 2.63e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  12 SLLLGSTITM----SSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWD 85
Cdd:COG1007   106 ALLLFATLGMmlmaSANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  86 ITQLSHPVS-----------GLVLT-SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKL----PPITLLYMTSQSL 149
Cdd:COG1007   185 LAGIAAALAagganspllllGLVLVlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 150 NP---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTL--LNFYL--YTMMTAAVFLTMNSI 222
Cdd:COG1007   265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 223 K-----VQNLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLA 297
Cdd:COG1007   345 SrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                  .
gi 1891133879 298 Y 298
Cdd:COG1007   425 K 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 2.27e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 99.33  E-value: 2.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  13 LLLGSTITMSSNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  79 WHTGQWDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYmtSQSLNPTLLTTMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 159 ILSTALGGWMGLNQTQIRKILAFSSISHLGW----MAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIK-VQNLSTLMTA 233
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILALNvYKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1891133879 234 WTK-IPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRL 296
Cdd:MTH00196  240 LSRrLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.28e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.27  E-value: 1.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  14 LLGSTITMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  93 VS-----------GLV-LTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKL----PPITLLYMTSQSLNPT---L 153
Cdd:PRK05777  193 LAdgsgnsllllfGLVfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTL--LNFYL--YTMMTAAVFLTMNSIK-----V 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1891133879 225 QNLSTL-MTAWTKiPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRL 296
Cdd:PRK05777  353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 2.33e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 91.62  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   8 VFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  87 TQLSHPVSGLV----LTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPTLLTtmAILST 162
Cdd:MTH00199  181 QGINSILTGDVgkilITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 163 ALGGWMGLNQTQIRKILAFSSISHLGW----MAIILIYDPKLTLLNFYLYTMMTAAVFLTMNSIKVQN--LSTLMTAWTK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1891133879 237 IPALNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.49e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 89.24  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  14 LLGSTITMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  93 VSGLVLT------------SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLP---PITLLYMTSQS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLN--FYL--YTMMTAAVFLTMNSIKVQN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1891133879 227 ---LSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 1.65e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.51  E-value: 1.65e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   3 PQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  74 SMTNAWHTGQ--------------WDITQLSHPVSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1891133879 140 TLLymTSQSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-268 1.96e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 73.64  E-value: 1.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  13 LLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  93 VSGL----------VLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNP--------TLL 154
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 155 TTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-ILIYDPK-LTLLNFYL--YTMMTAAVFLTMNSIKVQ----N 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAAGAIERAtgtrD 355

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1891133879 227 LSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-208 1.29e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 62.33  E-value: 1.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   1 MSPQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSSM-- 75
Cdd:CHL00049  108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  76 TNAWHTGQWDI------TQLSHPVSGLV----LTSAIAMKLGLVPFHFWFPEVLQGS-----------SLTTGLLLSTIM 134
Cdd:CHL00049  188 LSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 135 klppITLLYMTSQSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILI-------YDPKLTLLNFYL 207
Cdd:CHL00049  268 ----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYI 343


                  .
gi 1891133879 208 Y 208
Cdd:CHL00049  344 F 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-220 1.39e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 62.38  E-value: 1.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLSHPVSGLV-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 116 PEVLQGSSLTTGLLLSTIMKLP----PITLLYMTSQSLNP---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1891133879 189 WMAIILI--YDPKLTLLNFYLytmmtaAVFLTMN 220
Cdd:PRK02504  314 FVMIGLVagTEAGYASMVFYL------LAYLFMN 341
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 4.42e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.88  E-value: 4.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS-----------SMTNAWHTGQWDITQLSHPVSGLvLTS 100
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygtlNMAYLAVKMSENPTVVAKIALAL-FIA 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 101 AIAMKLGLVPFHFWFPEVLQG--SSLTTGLLLSTIMKLPPI--TLLYMTSQSLNPT----LLTTMAILSTALGGWMGLNQ 172
Cdd:PRK08376  229 GLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 173 TQIRKILAFSSISHLGWM------AIILIYDPKLT----------LLNFYLYTMMTAAVFLT----MNSIKVQNLSTLMT 232
Cdd:PRK08376  309 KDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGG 388

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1891133879 233 AWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 5.63e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.48  E-value: 5.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLS-HPVSG-------LVLTSAIAMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPLtaqlllfLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 119 LQGSSLTTGLLLSTIM-KLP-------PITLLYMTSQSLNPTLLTtMAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1891133879 191 AI 192
Cdd:COG1008   315 LL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.03e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 50.72  E-value: 1.03e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1891133879 291 FFYLRLAYCTTITLPPHTTNHMKQWRTNKP-TSILIAILTTMSVILLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 7.02e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.71  E-value: 7.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  50 PRAIEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-SHPVSGLVLT-------SAIAMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 120 QGSSLTTGLLLSTIMKLPP-------ITLLYMTSQSLNPtLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-194 1.15e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.15  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   7 LVFITSLLLgstITMSSNHWIMaWAGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  86 ITQLSHPVSGLVLTSAI----------AM-KLGLVPFHFWFPEVLQG----SSL-------TTGLLLstIMKLPPITlly 143
Cdd:COG1009   194 FSELLAAAPTILSSPLLtlillllllgAFgKSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF--- 268

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1891133879 144 mtsqSLNPTLLTTMAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMAIIL 194
Cdd:COG1009   269 ----ALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-192 5.34e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.00  E-value: 5.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   9 FITSLLLgstiTMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSM---TNAWhtgqwd 85
Cdd:PRK06458  117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA------ 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  86 iTQLSHPVSGLVLTSAIAM----------------------KLGLVPFHFWFPEVLQG-----SSLTTGLLLSTimKLPP 138
Cdd:PRK06458  187 -TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNV--ALYA 263

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1891133879 139 ITLLYM-TSQSLNP----TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458  264 VLRYYIlIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 6.20e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.83  E-value: 6.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  13 LLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  87 TQLSHPVS----GLVLTSAIAM------KLGLVPFHFWFPEV-LQGSSLTTGLLLSTIMKLPPITLLYMTS-------QS 148
Cdd:PRK08676  191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1891133879 149 LNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 1.03e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.23  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  80 HTGQWDITQL-SHPVSGLVLTSAIAM-------KLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLL------YMT 145
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFAD 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 146 SQSLNPTLLTtMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIL-IYDPKLTLLNFYL---YTMMTAAVFLTMNS 221
Cdd:PRK12644  263 VPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMllaHALFKAALFLVVGI 341

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1891133879 222 IKVQ----NLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  342 IDHStgtrDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 2.37e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.96  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  50 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQL-SHPVSGLVLTS-------AIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPGVQYWlflaffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 118 VLQ-----GSSLTTGLLLST------IMKLPpitLLYMTSQSLNPtLLTTMAILSTALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygllRFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                  ....*.
gi 1891133879 187 LGWMAI 192
Cdd:PRK05846  313 MGFVTL 318
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 3.54e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 3.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDI---TQLSH--PVSG-LVLTSAI----AMKLGLVPFHFWFPEV-LQGSS 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1891133879 124 LTTGLLLSTIMKLPPITLL------YMTSQSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-279 8.51e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.22  E-value: 8.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   3 PQAKLVFITSLLLGSTITMSSNHWIMAWAGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHTG 82
Cdd:PRK08668   97 DAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTG 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  83 QWDITQLSHPVS-----------GLVLTSAIAMKLGLVPFHFWFPE-----------VLQG--SSLTTGLLLSTIMKLPP 138
Cdd:PRK08668  176 TFDFADISQGLIndtstgfalivFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPG 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 139 ITLLYMTSQSLNPTLLTTMAI----LSTALGGWMGLNQTQIRKILAFSSISHLGWmaiILIYDPKLTLLNF-------YL 207
Cdd:PRK08668  256 TKLFSEFGTYRGVPLFNYILAwlgnISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFN 332

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1891133879 208 YTMMTAAVFLTMNSIKVQNLSTLMT-----AWtKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTA 279
Cdd:PRK08668  333 HALFKGLFFLIFAAVIYRTGTTKISemgglIE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 1.03e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  55 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLSHPVSGLVLT--------SAIAMKLGLVPFHFWFPEVL-QGSS 123
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1891133879 124 LTTGLLLSTIMKLPPITLLYMTSQSLNPT------LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 2.02e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.99  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 101 AIAMKLGLVPFHFWFPEV-----LQGSSLTTGLLLST----IMKLP-PItlLYMTSQSLNPTLLtTMAILSTALGGWMGL 170
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLggygLVRLSwPI--LPLGAQNLAPAVI-AMGIVGIVYGSFATC 315

                          90       100
                  ....*....|....*....|....*
gi 1891133879 171 NQTQIRKILAFSSISHLGWMAIILI 195
Cdd:MTH00226  316 RQIDVKRLVAYSSVAHMGLVSITLV 340
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.78e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 42.56  E-value: 2.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQLSH--PVSGLVLT------SAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 104 MKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLY-----------MTSQSLNpTLLTTMAILSTALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIriyftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 173 TQIRKILAFSSISHLGWMAIILIYDPKLTLLN--FYL--YTMMTAAVFLTMNSIKV----QNLSTLMTAWTKIPALNAML 244
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVtygtRRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1891133879 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPTATLMSLLSLLSLFFYLRLAY 298
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 6.37e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.48  E-value: 6.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 105 KLGLvpfHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMT-----SQSLNPTLLTTMAILSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 180 AFSSISHLGWMAIILIYDPKLTLLNFYL--YTMMTAAVFLTMNSI------KVQNLSTLMTAWTKIPALNAMLLLTLLSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVihsttvDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397

                         170
                  ....*....|....*..
gi 1891133879 252 AGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  398 MGLPYLTGFYSKDLILE 414
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 1.29e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.78  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  52 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHPVSGLVLTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 116 PEVLQGSSLTTGLLLSTIMKLPPITL------LYmtsqSLNPTLLTTMAILSTA---LGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLvarmypVF----EQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQ 326


                  ....
gi 1891133879 187 LGWM 190
Cdd:PRK07376  327 LGYM 330
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.58e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.20  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  48 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------SHPVSGLVLTSAI---AMKLGLVPFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATIlqdselienikGHPLFLITLILIFigaAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 114 WFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNPT-----LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                  ....*...
gi 1891133879 189 WMAIILIY 196
Cdd:PRK12649  316 YLMTMYGY 323
PRK12650 PRK12650
DUF4040 family protein;
97-263 1.92e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  97 VLTSAIAM--------KLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSL--NPT---LLTTMAILSTA 163
Cdd:PRK12650  205 GLTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITAL 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 164 LGGWMGLNQTQIRKILAFSSISHLGWM-AIILIYDP-KLT--LLNFYLYTMMTAAVFLTMNSIKVQ----NLSTLMTAWT 235
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDHQagtrDIRRLGSLWR 364

                         170       180
                  ....*....|....*....|....*...
gi 1891133879 236 KIPALNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  365 RMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
4-190 4.80e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 4.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879   4 QAKLVFITSLLLGS-TITMSSNHW---IMAWA--GLEINTLailpLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTN 77
Cdd:PRK08168   99 QRRYVRALAGVLAAvHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALA 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  78 AWHTGQWDITQL---------SHP--VSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLY--- 143
Cdd:PRK08168  175 YLEVGSLSLSALwahlaaqgaSPSlqAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIRfap 254

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1891133879 144 MTSQSLNP-TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK08168  255 LLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 5.16e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 5.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 152 TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILIYDPKLTLLNFYLY----TMMTAAVFLTMNSIKVQ-- 225
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISYHfg 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1891133879 226 --NLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  360 ttKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 7.51e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.01  E-value: 7.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  96 LVLTSAIAMKLGLVPFhFWFPEVLQGSSLTTGLLLSTIMKLPPI-------TLLYMTSQSLNPTLLTTMAILSTALGGWM 168
Cdd:PRK12663  211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALG 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 169 GLNQTQIRKILAFSSISHLGWM-AIILIYDPK-LTLLNFYLYTMMT--AAVFLTMNSIKV----QNLSTLMTAWTKIPAL 240
Cdd:PRK12663  290 ALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRltgyRSLQYLGGLYRKEPLF 369

                         170       180
                  ....*....|....*....|....*...
gi 1891133879 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 8.38e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.17  E-value: 8.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLSHP-----VSGLVLTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 130 LSTIM-KLPPITLLYMTSQSLNP-----TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG--WMAIILIYDPKLT 201
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiiLMGIGLYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 202 LLNFYLYTMMTAAVFLTMNSIKVQNL------STLMTAWTK-----------IPALNAMLLLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667  323 GLDTLALLALGGALFHSLNHALFKSLlfltagSVVHATGTRniekmgglvklMPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*.
gi 1891133879 265 LIIQEL 270
Cdd:PRK08667  403 LLYESF 408
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 8.80e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 37.70  E-value: 8.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LSHPVSGLVLTSAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 109 V------PFHFWFPEVLQGSSLTTGLLLSTIMKLPPITLLYMTSQSLNP--------TLLTTMAILSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 175 IRKILAFSSISHLGWMAIILIYDPKLTL-------LNFYLYTmmtAAVFLTMNSI----KVQNLSTLMTAWTKIPALNAM 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1891133879 244 LLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-217 8.96e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 37.74  E-value: 8.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879  53 IEAATKYFLTQAAASALVLFSSMTNAWHTGQWD-----ITQLSHPVSGLVLTS---AIAMKLGLVPFHFWFPEV-----L 119
Cdd:MTH00204  162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVGfflSLAVKIPQIPFHIWLPQAhveapV 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891133879 120 QGSSLTTGLLLstimKLPPITLLYMT-------SQSLNPtLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGwmai 192
Cdd:MTH00204  242 AGSVILAGILL----KLGGYGFLRFSwplfpaaSEYFAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG---- 312

                         170       180
                  ....*....|....*....|....*..
gi 1891133879 193 iliydpkLTLLNFYLYTM--MTAAVFL 217
Cdd:MTH00204  313 -------LVPLGLFTHTIegLVAAVFL 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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