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Conserved domains on  [gi|1891019314|gb|QNE85788|]
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cytochrome b [Musca autumnalis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 713.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  12 LSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  92 FICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 172 DNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLVLINPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKILFWVMVV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1891019314 332 TVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 713.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  12 LSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  92 FICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 172 DNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLVLINPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKILFWVMVV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1891019314 332 TVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-371 1.04e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.59  E-value: 1.04e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  12 LSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  92 FICIYLHVGRGIYYGSYLYT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGF 169
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 170 AVDNATLTRFFTFH-FILPFIVLAMTMIHLLFLHETGSNNPIG----LNSNVDKIPFHPYFTYKDIVGFIIMTMILILLV 244
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 245 LINPylLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPIN 322
Cdd:COG1290   260 FFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1891019314 323 KILFWVMVVTVILLTWIGARPVEApfVLVGQILTVVYFSYFLFN-PLITK 371
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVlPILAF 385
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.52e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.30  E-value: 2.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  10 PILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  90 FFFICIYLHVGRGIYYGSY--LYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1891019314 168 GFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 7.83e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 240.36  E-value: 7.83e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  19 LVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  99 VGRGIYYGSYLYT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1891019314 177 TRFFTFHFILPFIVLAMTMIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-350 1.08e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 243 LVLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFRGIQFYPI 321
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|....*....
gi 1891019314 322 NKILFWVMVVTVILLTWIGARPVEAPFVL 350
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 713.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  12 LSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  92 FICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 172 DNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLVLINPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKILFWVMVV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1891019314 332 TVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 641.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   1 MNKPLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLL 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  81 RTLHANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGID 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMIL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 241 ILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1891019314 321 INKILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDNLL 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 5-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 637.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   5 LRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  85 ANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 165 VWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLV 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 245 LINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKI 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1891019314 325 LFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDN 375
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 635.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   1 MNKPLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLL 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  81 RTLHANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGID 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMIL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 241 ILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1891019314 321 INKILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLF-NPLITKWWDNLLN 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGALENKMLN 379
CYTB MTH00074
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 624.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   1 MNKPLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLL 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  81 RTLHANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGID 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMIL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 241 ILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1891019314 321 INKILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDNLL 377
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 622.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   5 LRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  85 ANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 165 VWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLV 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 245 LINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1891019314 325 LFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLF 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 4-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 613.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   4 PLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTL 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  84 HANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 164 WVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 244 VLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINK 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1891019314 324 ILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFL 364
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 608.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   1 MNKPLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLL 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  81 RTLHANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGID 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMIL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 241 ILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1891019314 321 INKILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDNLL 377
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00034
cytochrome b; Validated
 4-369 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 573.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   4 PLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTL 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  84 HANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 164 WVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILL 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 244 VLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINK 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1891019314 324 ILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLF-NPLI 369
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLI 369
CYTB MTH00022
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 522.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   4 PLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTL 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  84 HANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 164 WVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILL 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 244 VLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINK 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1891019314 324 ILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDNLL 377
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 520.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   1 MNKPLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLL 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  81 RTLHANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGID 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMIL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 241 ILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1891019314 321 INKILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDNLLN 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00053
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 507.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   1 MNKPLRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLL 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  81 RTLHANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGID 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMIL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 241 ILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1891019314 321 INKILFWVMVVTVILLTWIGARPVEAPFVLVGQILTVVYFSYFLFNPLITKWWDNLL 377
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00033
cytochrome b; Provisional
 5-364 1.27e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 394.69  E-value: 1.27e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314   5 LRLKHPILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLH 84
Cdd:MTH00033    1 MRLRKTGLLEPVNDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  85 ANGASFFFICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQW 164
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 165 VWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILIlLV 244
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFV-II 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 245 LINPY---LLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPI 321
Cdd:MTH00033  240 GIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPT 319

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1891019314 322 NKILFWVMVVTVILLTWIGARPVEA-PFVLVGQILTVVYFSYFL 364
Cdd:MTH00033  320 GKFFFWFIVGDFIILTWIGSAPAGAdPYVLIGRIATIFYFGYFL 363
CYTB MTH00086
cytochrome b; Provisional
 16-365 6.50e-130

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 376.59  E-value: 6.50e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  16 NNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFFFICI 95
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  96 YLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNAT 175
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 176 LTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGfIIMTMILILLVLINPYLLGDPD 255
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 256 NFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYhlsKFRGIQFYPINKILFWVMVVTVIL 335
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|
gi 1891019314 336 LTWIGARPVEAPFVLVGQILTVVYFSYFLF 365
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-371 1.04e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.59  E-value: 1.04e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  12 LSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  92 FICIYLHVGRGIYYGSYLYT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGF 169
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 170 AVDNATLTRFFTFH-FILPFIVLAMTMIHLLFLHETGSNNPIG----LNSNVDKIPFHPYFTYKDIVGFIIMTMILILLV 244
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 245 LINPylLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPIN 322
Cdd:COG1290   260 FFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1891019314 323 KILFWVMVVTVILLTWIGARPVEApfVLVGQILTVVYFSYFLFN-PLITK 371
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVlPILAF 385
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.52e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.30  E-value: 2.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  10 PILSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  90 FFFICIYLHVGRGIYYGSY--LYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1891019314 168 GFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 12-358 2.84e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 262.61  E-value: 2.84e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  12 LSIANNALVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFF 91
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  92 FICIYLHVGRGIYYGSYLYTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAV 171
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 172 DNATLTRFFTFHFILPFIVLAMTMIHLLFLHETGSNNPIGLNSNV-DKIPFHPYFTYKDIVGFIIMTMILILLVLINPYL 250
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 251 LGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGviaLVLsiaILAILPFYHLSKFRGIQFYPI-NKILFWVM 329
Cdd:MTH00046  242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVL---VLSFLFFLWVPTFNGSSVYSVwRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*....
gi 1891019314 330 VVTVILLTWIGARPVEAPFVLVGQILTVV 358
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 7.83e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 240.36  E-value: 7.83e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  19 LVDLPAPSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  99 VGRGIYYGSYLYT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1891019314 177 TRFFTFHFILPFIVLAMTMIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 5.01e-51

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 168.19  E-value: 5.01e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  89 SFFFICIYLHVGRGIYYGSYLYTP--TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 167 GGFAVDNATLTRFFTFHF-ILPFIVLAMTMIHLLFLHETGSNNPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLVL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1891019314 246 INPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 1.24e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 163.97  E-value: 1.24e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 208 NPIGLNSNVDKIPFHPYFTYKDIVGFIIMTMILILLVLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1891019314 288 KLGGVIALVLSIAILAILPFYHLSKFRGiQFYPINKILFWVMVVTVILLTWIGARPVEAPFVLVGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 3.63e-44

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 148.01  E-value: 3.63e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFRGIQFYPINKILFWVMVVTVILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1891019314 339 IGARPVEAPFVLVGQILTVVY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 1.31e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 135.22  E-value: 1.31e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  34 FGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRGIYYGSYlYTP- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGY-KKPr 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 113 --TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFI 189
Cdd:PRK03735  123 elNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWA 202

                         170       180
                  ....*....|....*....|.
gi 1891019314 190 VLAMTMIHLLFLHETGSNNPI 210
Cdd:PRK03735  203 LAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 3.88e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.82  E-value: 3.88e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314  25 PSNISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFNSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRgIY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VY 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 105 YGSYLYTP---TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIDLVQWVWGGFAVDNATLTRFFT 181
Cdd:CHL00070  106 LTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                         170       180       190
                  ....*....|....*....|....*....|
gi 1891019314 182 FH-FILPFIVLAMTMIHLLFLHETGSNNPI 210
Cdd:CHL00070  186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 239-341 5.53e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.40  E-value: 5.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 239 ILILLVLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFRGIQ 317
Cdd:CHL00058   50 CNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPF 124

                          90       100
                  ....*....|....*....|....
gi 1891019314 318 FYPINKILFWVMVVTVILLTwIGA 341
Cdd:CHL00058  125 RRPVATTVFLIGTAVALWLG-IGA 147
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 230-350 1.02e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.81  E-value: 1.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 230 IVGFIIMTMI--LILLVLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPF 307
Cdd:COG5679    40 IFPVVILGTIalCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1891019314 308 Y-HLSKFRGIQFYPINKILFWVMVVTVILLTWIGARPVEAPFVL 350
Cdd:COG5679   115 IeNVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-350 1.08e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891019314 243 LVLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFRGIQFYPI 321
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|....*....
gi 1891019314 322 NKILFWVMVVTVILLTWIGARPVEAPFVL 350
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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