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Conserved domains on  [gi|189067453|dbj|BAG37435|]
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unnamed protein product [Homo sapiens]

Protein Classification

galectin family protein( domain architecture ID 10049222)

galectin family protein may exclusively bind beta-galactosides such as lactose in a manner independent of metal ions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 117-244 1.22e-54

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


:

Pssm-ID: 238025  Cd Length: 127  Bit Score: 171.66  E-value: 1.22e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453 117 PYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGN-DVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESG 195
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGSsDIALHFNPRFDEN---VIVRNSFLNGNWGPEERSGGFPFQPG 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 189067453 196 KPFKIQVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:cd00070   78 QPFELTILVEEDKFQIFVNGQHFFSFPHRL-PLESIDYLSINGDVSLTS 125
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 9-113 2.49e-07

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 2.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   9 DALSGSGNPNPQGWPGAWGNQP-AGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPG 87
Cdd:PRK07764 619 AAPAAPAAPAPAGAAAAPAEASaAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

                         90       100
                 ....*....|....*....|....*.
gi 189067453  88 AYPSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PRK07764 699 AQPAPAPAATPPAGQADDPAAQPPQA 724
 
Name Accession Description Interval E-value
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 117-244 1.22e-54

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 171.66  E-value: 1.22e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453 117 PYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGN-DVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESG 195
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGSsDIALHFNPRFDEN---VIVRNSFLNGNWGPEERSGGFPFQPG 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 189067453 196 KPFKIQVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:cd00070   78 QPFELTILVEEDKFQIFVNGQHFFSFPHRL-PLESIDYLSINGDVSLTS 125
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 123-244 1.02e-53

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 169.31  E-value: 1.02e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   123 PGGVVPRMLITILGTVKPNANRIALDFQRG--NDVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESGKPFKI 200
Cdd:smart00908   1 PGGLSPGSSITIRGIVLPDAKRFSINLQCGpnADIALHFNPRFDEG---TIVRNSKQNGKWGKEERSGGFPFQPGQPFEL 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 189067453   201 QVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:smart00908  78 EILVEEDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTS 120
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 123-244 1.57e-48

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 156.26  E-value: 1.57e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  123 PGGVVPRMLITILGTVKPNANRIALDFQRG----NDVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESGKPF 198
Cdd:pfam00337   1 PGGLQPGSSLTIKGIVLPDAQRFSINLQTGvgpsDDIALHFNPRFDEN---VIVRNSRQNGQWGQEEREGGFPFQPGQPF 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 189067453  199 KIQVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:pfam00337  78 ELTILVGDDHFKIYVNGQHFTTFKHRL-PPEDIDALQVRGDVKLTS 122
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 9-113 2.49e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 2.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   9 DALSGSGNPNPQGWPGAWGNQP-AGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPG 87
Cdd:PRK07764 619 AAPAAPAAPAPAGAAAAPAEASaAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

                         90       100
                 ....*....|....*....|....*.
gi 189067453  88 AYPSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PRK07764 699 AQPAPAPAATPPAGQADDPAAQPPQA 724
hnRNP-L_PTB TIGR01649
hnRNP-L/PTB/hephaestus splicing factor family; Included in this family of heterogeneous ...
 46-136 1.94e-04

hnRNP-L/PTB/hephaestus splicing factor family; Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).


Pssm-ID: 273733 [Multi-domain]  Cd Length: 481  Bit Score: 42.11  E-value: 1.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   46 PGQAPPGAYP----------GQAPPGAYHGAPGAYPGAPAP--GVYPGPPSGPGAY---PSSGQPSAPGAYPATGPYGAP 110
Cdd:TIGR01649 194 PGRRDPGLDQthrqrqpallGQHPSSYGHDGYSSHGGPLAPlaGGDRMGPPHGPPSryrPAYEAAPLAPAISSYGPAGGG 273

                          90       100
                  ....*....|....*....|....*.
gi 189067453  111 AGPLIVPYNLPlPGGVVPRMLITILG 136
Cdd:TIGR01649 274 PGSVLMVSGLH-QEKVNCDRLFNLFC 298
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
2-127 2.60e-04

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 41.66  E-value: 2.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   2 ADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYP-GAPAPGVYP 80
Cdd:COG3469   91 STSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATgGTTTTSTTT 170

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 189067453  81 GPPSGPGAYPSSGQPSAPGAYPATGPYGAPAGPLIVPYNLPLPGGVV 127
Cdd:COG3469  171 TTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPKHVL 217
G_path_suppress pfam15991
G-protein pathway suppressor; This family of proteins inhibits G-protein- and ...
 42-122 2.74e-04

G-protein pathway suppressor; This family of proteins inhibits G-protein- and mitogen-activated protein kinase-mediated signal transduction.


Pssm-ID: 464961 [Multi-domain]  Cd Length: 272  Bit Score: 41.44  E-value: 2.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   42 PGAYPGQapPGAYPGQAPPGAYHGAPGAYPGAPA------PGVYPGPPSGPGAYPSSGQPSAP--GAYPATGPygaPAGP 113
Cdd:pfam15991 147 QQAYYKQ--PAFSPGYAEHGQQKHDDGRRGYDVArfgswnKSTAQYPPSGQLFYPTHQYLPPPqtQGQADARL---QTIY 221


                  ....*....
gi 189067453  114 LIVPYNLPL 122
Cdd:pfam15991 222 PQPGYALPL 230
 
Name Accession Description Interval E-value
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 117-244 1.22e-54

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 171.66  E-value: 1.22e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453 117 PYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGN-DVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESG 195
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGSsDIALHFNPRFDEN---VIVRNSFLNGNWGPEERSGGFPFQPG 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 189067453 196 KPFKIQVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:cd00070   78 QPFELTILVEEDKFQIFVNGQHFFSFPHRL-PLESIDYLSINGDVSLTS 125
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 123-244 1.02e-53

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 169.31  E-value: 1.02e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   123 PGGVVPRMLITILGTVKPNANRIALDFQRG--NDVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESGKPFKI 200
Cdd:smart00908   1 PGGLSPGSSITIRGIVLPDAKRFSINLQCGpnADIALHFNPRFDEG---TIVRNSKQNGKWGKEERSGGFPFQPGQPFEL 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 189067453   201 QVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:smart00908  78 EILVEEDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTS 120
GLECT smart00276
Galectin; Galectin - galactose-binding lectin
 118-248 1.20e-53

Galectin; Galectin - galactose-binding lectin


Pssm-ID: 214596  Cd Length: 128  Bit Score: 169.33  E-value: 1.20e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   118 YNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGN-DVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESGK 196
Cdd:smart00276   1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGdDIALHFNPRFNEN---KIVCNSKLNGSWGSEEREGGFPFQPGQ 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 189067453   197 PFKIQVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTSASYT 248
Cdd:smart00276  78 PFDLTIIVQPDHFQIFVNGVHITTFPHRL-PLESIDYLSINGDVQLTSVSFE 128
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 123-244 1.57e-48

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 156.26  E-value: 1.57e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  123 PGGVVPRMLITILGTVKPNANRIALDFQRG----NDVAFHFNPRFNENnrrVIVCNTKLDNNWGREERQSVFPFESGKPF 198
Cdd:pfam00337   1 PGGLQPGSSLTIKGIVLPDAQRFSINLQTGvgpsDDIALHFNPRFDEN---VIVRNSRQNGQWGQEEREGGFPFQPGQPF 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 189067453  199 KIQVLVEPDHFKVAVNDAHLLQYNHRVkKLNEISKLGISGDIDLTS 244
Cdd:pfam00337  78 ELTILVGDDHFKIYVNGQHFTTFKHRL-PPEDIDALQVRGDVKLTS 122
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 9-113 2.49e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 2.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   9 DALSGSGNPNPQGWPGAWGNQP-AGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPG 87
Cdd:PRK07764 619 AAPAAPAAPAPAGAAAAPAEASaAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

                         90       100
                 ....*....|....*....|....*.
gi 189067453  88 AYPSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PRK07764 699 AQPAPAPAATPPAGQADDPAAQPPQA 724
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 12-114 1.47e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 1.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  12 SGSGNPNPQGWPGAWGNQPAGAGGYPGAsypgAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPGAYPS 91
Cdd:PRK07764 643 PAPGVAAPEHHPKHVAVPDASDGGDGWP----AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPA 718

                         90       100
                 ....*....|....*....|...
gi 189067453  92 SGQPSAPGAYPATGPYGAPAGPL 114
Cdd:PRK07764 719 AQPPQAAQGASAPSPAADDPVPL 741
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 10-113 4.01e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 4.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  10 ALSGSGNPNPQGW-PGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGayhgaPGAYPGAPAPGVYPGPPSGPGA 88
Cdd:PRK07764 594 AAGGEGPPAPASSgPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG-----VAAPEHHPKHVAVPDASDGGDG 668

                         90       100
                 ....*....|....*....|....*
gi 189067453  89 YPSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PRK07764 669 WPAKAGGAAPAAPPPAPAPAAPAAP 693
PHA03378 PHA03378
EBNA-3B; Provisional
 17-150 6.78e-06

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 46.98  E-value: 6.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  17 PNPQGWPGAwGNQPAGAGGypGASYPGAYPGQA-PPGAYPGQAPPGAyhGAPG-AYPGAPAPGVYPGPPSGPGAYPSSGQ 94
Cdd:PHA03378 705 RPPAAPPGR-AQRPAAATG--RARPPAAAPGRArPPAAAPGRARPPA--AAPGrARPPAAAPGRARPPAAAPGAPTPQPP 779

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189067453  95 PSAP---------GAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILgTVKPNANRIALDFQ 150
Cdd:PHA03378 780 PQAPpapqqrprgAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLL-TGGVKRGRPSLKKP 843
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 23-105 2.35e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 45.06  E-value: 2.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  23 PGAWGNQPAGAGGYPGASYPGAypGQAPPgayPGQAPPGAYHGAPG-----AYPGAPAPGVYPGP-------PSGPGAY- 89
Cdd:PRK14959 373 PSGGGASAPSGSAAEGPASGGA--ATIPT---PGTQGPQGTAPAAGmtpssAAPATPAPSAAPSPrvpwddaPPAPPRSg 447

                         90
                 ....*....|....*..
gi 189067453  90 -PSSGQPSAPGAYPATG 105
Cdd:PRK14959 448 iPPRPAPRMPEASPVPG 464
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 27-113 3.86e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 3.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  27 GNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPP--GAYHGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPS-APGAYPA 103
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPaaAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSpPPAAAPS 463

                         90
                 ....*....|
gi 189067453 104 TGPYGAPAGP 113
Cdd:PRK07764 464 AQPAPAPAAA 473
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 10-113 4.79e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 4.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  10 ALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAyPGQAPPGAYPGQAPPGAYHGAPGAYPGA---------PAPGVYP 80
Cdd:PRK07764 671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP-AATPPAGQADDPAAQPPQAAQGASAPSPaaddpvplpPEPDDPP 749

                         90       100       110
                 ....*....|....*....|....*....|...
gi 189067453  81 GPPSGPGAYPSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 8-106 7.56e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.52  E-value: 7.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   8 HDALSGSGNPNPQGWPGAWGNQPAGagGYPGASYPGAYPGQAPPGAYPGQAPP---GAYHGAPGAYPGAPAPGVYPGPPS 84
Cdd:PRK14959 394 AATIPTPGTQGPQGTAPAAGMTPSS--AAPATPAPSAAPSPRVPWDDAPPAPPrsgIPPRPAPRMPEASPVPGAPDSVAS 471

                         90       100
                 ....*....|....*....|..
gi 189067453  85 GPGAYPSSGQPSAPGAYPATGP 106
Cdd:PRK14959 472 ASDAPPTLGDPSDTAEHTPSGP 493
PHA03247 PHA03247
large tegument protein UL36; Provisional
 15-128 8.33e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 8.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   15 GNPNPQGWPGAWGNQPAGAggyPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQ 94
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPA---PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828

                          90       100       110
                  ....*....|....*....|....*....|....
gi 189067453   95 PSAPGAYPATGPygAPAGPliVPYNLPLPGGVVP 128
Cdd:PHA03247 2829 PPPTSAQPTAPP--PPPGP--PPPSLPLGGSVAP 2858
PHA03378 PHA03378
EBNA-3B; Provisional
 16-129 8.97e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.52  E-value: 8.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  16 NPNPQGWPGAWGNQPAGAGGYPGASYPG-AYPGQAPPG-AYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPGAYPSSG 93
Cdd:PHA03378 675 QPSPTGANTMLPIQWAPGTMQPPPRAPTpMRPPAAPPGrAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRA 754

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 189067453  94 QPSAPGAYPATGPYGAPAGPLIVPynlPLPGGVVPR 129
Cdd:PHA03378 755 RPPAAAPGRARPPAAAPGAPTPQP---PPQAPPAPQ 787
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
13-123 1.21e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.94  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  13 GSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPG-AYHGAPGAYPGAPAPGVYPGPPSGPGAYPS 91
Cdd:PRK12323 368 SGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAArAVAAAPARRSPAPEALAAARQASARGPGGA 447

                         90       100       110
                 ....*....|....*....|....*....|..
gi 189067453  92 SGQPSAPGAYPATGPYGAPAGPLIVPYNLPLP 123
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA 479
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-139 1.57e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   4 NFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPP 83
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189067453  84 SGPGAYPS-----SGQPSAPGAYPATGPYGAPAGPliVPYNLPLPGGVVPRMLITILGTVK 139
Cdd:PRK07764 466 PAPAPAAApeptaAPAPAPPAAPAPAAAPAAPAAP--AAPAGADDAATLRERWPEILAAVP 524
hnRNP-L_PTB TIGR01649
hnRNP-L/PTB/hephaestus splicing factor family; Included in this family of heterogeneous ...
 46-136 1.94e-04

hnRNP-L/PTB/hephaestus splicing factor family; Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).


Pssm-ID: 273733 [Multi-domain]  Cd Length: 481  Bit Score: 42.11  E-value: 1.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   46 PGQAPPGAYP----------GQAPPGAYHGAPGAYPGAPAP--GVYPGPPSGPGAY---PSSGQPSAPGAYPATGPYGAP 110
Cdd:TIGR01649 194 PGRRDPGLDQthrqrqpallGQHPSSYGHDGYSSHGGPLAPlaGGDRMGPPHGPPSryrPAYEAAPLAPAISSYGPAGGG 273

                          90       100
                  ....*....|....*....|....*.
gi 189067453  111 AGPLIVPYNLPlPGGVVPRMLITILG 136
Cdd:TIGR01649 274 PGSVLMVSGLH-QEKVNCDRLFNLFC 298
PHA03247 PHA03247
large tegument protein UL36; Provisional
 42-125 1.99e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   42 PGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSG---PGAYPSSGQPSAPGAYPATGPYGAPAGPliVPY 118
Cdd:PHA03247 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpatPGGPARPARPPTTAGPPAPAPPAAPAAG--PPR 2781


                  ....*..
gi 189067453  119 NLPLPGG 125
Cdd:PHA03247 2782 RLTRPAV 2788
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
2-127 2.60e-04

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 41.66  E-value: 2.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   2 ADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYP-GAPAPGVYP 80
Cdd:COG3469   91 STSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATgGTTTTSTTT 170

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 189067453  81 GPPSGPGAYPSSGQPSAPGAYPATGPYGAPAGPLIVPYNLPLPGGVV 127
Cdd:COG3469  171 TTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPKHVL 217
G_path_suppress pfam15991
G-protein pathway suppressor; This family of proteins inhibits G-protein- and ...
 42-122 2.74e-04

G-protein pathway suppressor; This family of proteins inhibits G-protein- and mitogen-activated protein kinase-mediated signal transduction.


Pssm-ID: 464961 [Multi-domain]  Cd Length: 272  Bit Score: 41.44  E-value: 2.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   42 PGAYPGQapPGAYPGQAPPGAYHGAPGAYPGAPA------PGVYPGPPSGPGAYPSSGQPSAP--GAYPATGPygaPAGP 113
Cdd:pfam15991 147 QQAYYKQ--PAFSPGYAEHGQQKHDDGRRGYDVArfgswnKSTAQYPPSGQLFYPTHQYLPPPqtQGQADARL---QTIY 221


                  ....*....
gi 189067453  114 LIVPYNLPL 122
Cdd:pfam15991 222 PQPGYALPL 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 17-124 4.18e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 4.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   17 PNPQGWPGAWGNQPAGAGGypGASYPGAYPGQAPPGAYPGQAPPGAyhGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPS 96
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAA--RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785

                          90       100
                  ....*....|....*....|....*...
gi 189067453   97 APGAYPATGPYGAPAGPLIVPYNLPLPG 124
Cdd:PHA03247 2786 PAVASLSESRESLPSPWDPADPPAAVLA 2813
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
10-114 4.46e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 4.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  10 ALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAP-PGAYHGAPGAYPGAPAPGVYPGPPSGPGA 88
Cdd:PRK07003 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALaPKAAAAAAATRAEAPPAAPAPPATADRGD 440

                         90       100
                 ....*....|....*....|....*.
gi 189067453  89 YPSSGQPSAPGAYPATGPYGAPAGPL 114
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCDER 466
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 29-131 9.89e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 9.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  29 QPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPgvYPGPPSGPGAYPSSGQPSAPGAYPATGPYG 108
Cdd:PRK14951 404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP--PAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

                         90       100
                 ....*....|....*....|....
gi 189067453 109 APAGPLIVPYNL-PLPGGVVPRML 131
Cdd:PRK14951 482 APAAARLTPTEEgDVWHATVQQLA 505
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
12-123 1.58e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 1.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  12 SGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAP----PGAYHGAPGAYPGAPAPGVYPGPPSGPG 87
Cdd:PRK12323 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAParrsPAPEALAAARQASARGPGGAPAPAPAPA 455

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 189067453  88 AYPSSGQPSAPGAYPATGPYGAPAGPLIVPYNLPLP 123
Cdd:PRK12323 456 AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 37-117 1.77e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   37 PGASYPGAYPGQAPPGAYPGQAP-PGAYHGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSAPGAYPATGPYGAPAGPLI 115
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAaPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                  ..
gi 189067453  116 VP 117
Cdd:PRK12270  118 TP 119
PHA03247 PHA03247
large tegument protein UL36; Provisional
 17-140 2.05e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 2.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   17 PNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPgqAPPGAYHGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPS 96
Cdd:PHA03247 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 189067453   97 ----------APGAYPATGPYGAPAGPL-----IVPYNLPLPGGVVPRMLiTILGTVKP 140
Cdd:PHA03247 2801 pwdpadppaaVLAPAAALPPAASPAGPLppptsAQPTAPPPPPGPPPPSL-PLGGSVAP 2858
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 12-114 2.83e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.81  E-value: 2.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  12 SGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGA----YHGAPGAYPGAPAPGVYPGPPSGPG 87
Cdd:PRK07764 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPpepdDPPDPAGAPAQPPPPPAPAPAAAPA 771

                         90       100
                 ....*....|....*....|....*..
gi 189067453  88 AYPSSGQPSAPGAYPATGPYGAPAGPL 114
Cdd:PRK07764 772 AAPPPSPPSEEEEMAEDDAPSMDDEDR 798
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 37-111 3.20e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.54  E-value: 3.20e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189067453  37 PGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPGAPAPGVyPGPPSGPGAYPSSGQPSAPGAYPATGPYGAPA 111
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP-AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
PHA03247 PHA03247
large tegument protein UL36; Provisional
 50-113 3.92e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 3.92e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 189067453   50 PPGAYPGQAPPGAYHGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PHA03247 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
31-113 4.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 37.93  E-value: 4.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  31 AGAGGYPGASYPGAYPGQAPPgayPGQAPPGAyhGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQP--SAPGAYPATGPYG 108
Cdd:PRK12323 439 ASARGPGGAPAPAPAPAAAPA---AAARPAAA--GPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQ 513


                 ....*
gi 189067453 109 APAGP 113
Cdd:PRK12323 514 PDAAP 518
dnaA PRK14086
chromosomal replication initiator protein DnaA;
9-113 5.06e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 37.88  E-value: 5.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   9 DALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYHGAPGAYPgAPAPGVYPGPPSgpga 88
Cdd:PRK14086  89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQ-RPEPGAWPRAAD---- 163

                         90       100
                 ....*....|....*....|....*
gi 189067453  89 ypSSGQPSAPGAYPATGPYGAPAGP 113
Cdd:PRK14086 164 --DYGWQQQRLGFPPRAPYASPASY 186
PHA03185 PHA03185
UL14 tegument protein; Provisional
 75-113 6.44e-03

UL14 tegument protein; Provisional


Pssm-ID: 177553 [Multi-domain]  Cd Length: 214  Bit Score: 36.93  E-value: 6.44e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 189067453  75 APGVYPGPPSGPGAYPSS-----GQPSAPGAYPATGPYGAPAGP 113
Cdd:PHA03185 157 APAVRPGDLSGPGSRPTSgpvagGLPGGGAPAPPTPPRPGPTDP 200
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 19-111 6.44e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 37.56  E-value: 6.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   19 PQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAyhgAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSAP 98
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA---PPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

                          90
                  ....*....|...
gi 189067453   99 GAYPATGPYGAPA 111
Cdd:PRK12270  116 EVTPLRGAAAAVA 128
MISS pfam15822
MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic ...
 13-125 6.69e-03

MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic MAPK-interacting and spindle-stabilising protein-like proteins. MISS is rich in prolines and has four potential MAPK-phosphorylation sites, a MAPK-docking site, a PEST sequence (PEST motif) and a bipartite nuclear localization signal. The endogenous protein accumulates during mouse meiotic maturation and is found as discrete dots on the MII spindle. MISS is the first example of a physiological MAPK-substrate that is stabilized in MII that specifically regulates MII spindle integrity during the CSF arrest.


Pssm-ID: 318115 [Multi-domain]  Cd Length: 238  Bit Score: 36.89  E-value: 6.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453   13 GSGNPNPQGWPGAWGNQPAGAGGYP-GASYPGAYPGQAPPGAYPGQAPPgayhGAPGAYPGAPAPGVYPGPPSGPGAYPS 91
Cdd:pfam15822 128 APTDPAAAAPSGPWGSMSSGPWAPGmGGQYPAPNMPYPSPGPYPAVPPP----QSPGAAPPVPWGTVPPGPWGPPAPYPD 203

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 189067453   92 -SGQPSAPGAYPA-TGPYGAPAGPLIVPynlPLPGG 125
Cdd:pfam15822 204 pTGSYPMPGLYPTpNNPFQVPSGPSGAP---PMPGG 236
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
19-129 7.64e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 37.16  E-value: 7.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  19 PQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAyhgAPGAYPGAPAPGVYPGPPS-GPGAYPSSGQPSA 97
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAA---APAAAAAARAVAAAPARRSpAPEALAAARQASA 441

                         90       100       110
                 ....*....|....*....|....*....|..
gi 189067453  98 PGAYPATGPYGAPAgPLIVPYNLPLPGGVVPR 129
Cdd:PRK12323 442 RGPGGAPAPAPAPA-AAPAAAARPAAAGPRPV 472
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 31-128 8.25e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 37.27  E-value: 8.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189067453  31 AGAGGYPGASYPGAYPGQAPPGAYPGQAPPgayhgAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSAPGAYPATGPYGAP 110
Cdd:PRK07764 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARP-----AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP 660

                         90
                 ....*....|....*...
gi 189067453 111 AGPLIVPYNLPLPGGVVP 128
Cdd:PRK07764 661 DASDGGDGWPAKAGGAAP 678
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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