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Conserved domains on  [gi|1890512147]
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Chain Q, Sheath PA0622

Protein Classification

phage tail sheath family protein( domain architecture ID 10007475)

phage tail sheath family protein may be encoded in a region together with other putative prophage genes; it may be part of a type 6 secretion system (T6SS) that functions as a contractile injection system utilizing a phage tail-like structure, and is an intracellular system attached to the cytoplasmic membrane, or part of an extracellular contractile injection system (eCIS), such as found in insecticidal antifeeding prophages (Afps)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_sheath_1 super family cl01389
Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a ...
 3-383 5.32e-125

Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.


The actual alignment was detected with superfamily member PHA02560:

Pssm-ID: 470182 [Multi-domain]  Cd Length: 388  Bit Score: 365.57  E-value: 5.32e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147   3 FFHGVTVTNVDIGARTIALPASSVIGLcdVFT-PGAQASAKP-NVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVI 80
Cdd:PHA02560    5 YHHGVEVIEINEGTRPIRTVSTAVVGL--VCTaPDADATAFPlNTPVLITNVVDALGKAGAKGTLPRALDAIADQTKPPT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147  81 VAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSaQQAVATAMDGLAEKLRAIAILDGP- 159
Cdd:PHA02560   83 VVVRVAEGADEAATTSNIIGGVDADGKYTGIKALLAAQNVLGVKPRILGAPGLD-TQAVAVALAAMAQKLRAFAYISAPg 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 160 NSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFL 239
Cdd:PHA02560  162 CKTKEEAAAYRENFGQREVMVIWPDFKVYDTATNATATAPASARAAGLRAKIDNDVGWHKSLSNVGVLGVTGISRDVDWD 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 240 DGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLR 319
Cdd:PHA02560  242 LQDPSTDANLLNENGVTTLVRRNGFRFWGNRTCSDDPLFAFENYVRTAQVIADTIAEAHMWAVDKPLTPSLVRDIVEGIN 321

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1890512147 320 AFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVL 383
Cdd:PHA02560  322 AKFRDLVANGYILGGEAWFDPELNTKETLKAGKLYIDYDYTPVPPLEHLTFRQRITDRYLVEFV 385
 
Name Accession Description Interval E-value
FI PHA02560
major tail sheath protein; Provisional
 3-383 5.32e-125

major tail sheath protein; Provisional


Pssm-ID: 164955 [Multi-domain]  Cd Length: 388  Bit Score: 365.57  E-value: 5.32e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147   3 FFHGVTVTNVDIGARTIALPASSVIGLcdVFT-PGAQASAKP-NVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVI 80
Cdd:PHA02560    5 YHHGVEVIEINEGTRPIRTVSTAVVGL--VCTaPDADATAFPlNTPVLITNVVDALGKAGAKGTLPRALDAIADQTKPPT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147  81 VAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSaQQAVATAMDGLAEKLRAIAILDGP- 159
Cdd:PHA02560   83 VVVRVAEGADEAATTSNIIGGVDADGKYTGIKALLAAQNVLGVKPRILGAPGLD-TQAVAVALAAMAQKLRAFAYISAPg 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 160 NSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFL 239
Cdd:PHA02560  162 CKTKEEAAAYRENFGQREVMVIWPDFKVYDTATNATATAPASARAAGLRAKIDNDVGWHKSLSNVGVLGVTGISRDVDWD 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 240 DGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLR 319
Cdd:PHA02560  242 LQDPSTDANLLNENGVTTLVRRNGFRFWGNRTCSDDPLFAFENYVRTAQVIADTIAEAHMWAVDKPLTPSLVRDIVEGIN 321

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1890512147 320 AFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVL 383
Cdd:PHA02560  322 AKFRDLVANGYILGGEAWFDPELNTKETLKAGKLYIDYDYTPVPPLEHLTFRQRITDRYLVEFV 385
COG3497 COG3497
Phage tail sheath protein FI [Mobilome: prophages, transposons];
110-378 5.96e-112

Phage tail sheath protein FI [Mobilome: prophages, transposons];


Pssm-ID: 442720 [Multi-domain]  Cd Length: 273  Bit Score: 328.00  E-value: 5.96e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 110 GLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNS--TDEAAVAYAKNFG--SKRLFMVDPGV 185
Cdd:COG3497     1 GLEALEAADEKLGVKPRILIAPGLSSLPAVAAALLAHCEKLRAFAILDAPGDgtTLADAIAYRGNFGydSRRAALYYPWV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 186 QVWDsaTNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIR--DDG 263
Cdd:COG3497    81 KVFD--TNATVTVPPSGHAAGLYARVDAERGVWKSPSNKEINGVTGLSRPVGFDLQLTDTEANLLNPKGINTIRNfpGRG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 264 YRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLN 343
Cdd:COG3497   159 FRVWGNRTLSSDPEWRFINVRRTFDFIEESIAEATQWAVDEPNTPALWDDIRESINAFLRTLWRQGALLGGKVWCDEETN 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1890512147 344 SASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQW 378
Cdd:COG3497   239 TAEDIAAGKLVIDIGFAPVPPAEFITFRIRQTDGY 273
Phage_sheath_1C pfam17482
Phage tail sheath C-terminal domain; This entry represents the C-terminal domain in a variety ...
 273-375 3.00e-24

Phage tail sheath C-terminal domain; This entry represents the C-terminal domain in a variety of phage tail sheath proteins.


Pssm-ID: 435922 [Multi-domain]  Cd Length: 104  Bit Score: 95.80  E-value: 3.00e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 273 SSDSKWAFVTRVRTMDLVMDAILAGHKW--AVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSAsQLAQ 350
Cdd:pfam17482   1 DKDPDFLKNRTIRTLDYVNNDIRSTFKWkyPGKKLNDDDGRALVKSELNAYLRELQSLGAIENFDVECDVEVNRQ-GNDK 79

                          90       100
                  ....*....|....*....|....*
gi 1890512147 351 GKVYWNIRFTDVPPAENPNFRVEVT 375
Cdd:pfam17482  80 DRVVVNIDVTPVNSMEKLYFTVEVT 104
 
Name Accession Description Interval E-value
FI PHA02560
major tail sheath protein; Provisional
 3-383 5.32e-125

major tail sheath protein; Provisional


Pssm-ID: 164955 [Multi-domain]  Cd Length: 388  Bit Score: 365.57  E-value: 5.32e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147   3 FFHGVTVTNVDIGARTIALPASSVIGLcdVFT-PGAQASAKP-NVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVI 80
Cdd:PHA02560    5 YHHGVEVIEINEGTRPIRTVSTAVVGL--VCTaPDADATAFPlNTPVLITNVVDALGKAGAKGTLPRALDAIADQTKPPT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147  81 VAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSaQQAVATAMDGLAEKLRAIAILDGP- 159
Cdd:PHA02560   83 VVVRVAEGADEAATTSNIIGGVDADGKYTGIKALLAAQNVLGVKPRILGAPGLD-TQAVAVALAAMAQKLRAFAYISAPg 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 160 NSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFL 239
Cdd:PHA02560  162 CKTKEEAAAYRENFGQREVMVIWPDFKVYDTATNATATAPASARAAGLRAKIDNDVGWHKSLSNVGVLGVTGISRDVDWD 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 240 DGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLR 319
Cdd:PHA02560  242 LQDPSTDANLLNENGVTTLVRRNGFRFWGNRTCSDDPLFAFENYVRTAQVIADTIAEAHMWAVDKPLTPSLVRDIVEGIN 321

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1890512147 320 AFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVL 383
Cdd:PHA02560  322 AKFRDLVANGYILGGEAWFDPELNTKETLKAGKLYIDYDYTPVPPLEHLTFRQRITDRYLVEFV 385
COG3497 COG3497
Phage tail sheath protein FI [Mobilome: prophages, transposons];
110-378 5.96e-112

Phage tail sheath protein FI [Mobilome: prophages, transposons];


Pssm-ID: 442720 [Multi-domain]  Cd Length: 273  Bit Score: 328.00  E-value: 5.96e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 110 GLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNS--TDEAAVAYAKNFG--SKRLFMVDPGV 185
Cdd:COG3497     1 GLEALEAADEKLGVKPRILIAPGLSSLPAVAAALLAHCEKLRAFAILDAPGDgtTLADAIAYRGNFGydSRRAALYYPWV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 186 QVWDsaTNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIR--DDG 263
Cdd:COG3497    81 KVFD--TNATVTVPPSGHAAGLYARVDAERGVWKSPSNKEINGVTGLSRPVGFDLQLTDTEANLLNPKGINTIRNfpGRG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 264 YRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLN 343
Cdd:COG3497   159 FRVWGNRTLSSDPEWRFINVRRTFDFIEESIAEATQWAVDEPNTPALWDDIRESINAFLRTLWRQGALLGGKVWCDEETN 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1890512147 344 SASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQW 378
Cdd:COG3497   239 TAEDIAAGKLVIDIGFAPVPPAEFITFRIRQTDGY 273
Phage_sheath_1C pfam17482
Phage tail sheath C-terminal domain; This entry represents the C-terminal domain in a variety ...
 273-375 3.00e-24

Phage tail sheath C-terminal domain; This entry represents the C-terminal domain in a variety of phage tail sheath proteins.


Pssm-ID: 435922 [Multi-domain]  Cd Length: 104  Bit Score: 95.80  E-value: 3.00e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 273 SSDSKWAFVTRVRTMDLVMDAILAGHKW--AVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSAsQLAQ 350
Cdd:pfam17482   1 DKDPDFLKNRTIRTLDYVNNDIRSTFKWkyPGKKLNDDDGRALVKSELNAYLRELQSLGAIENFDVECDVEVNRQ-GNDK 79

                          90       100
                  ....*....|....*....|....*
gi 1890512147 351 GKVYWNIRFTDVPPAENPNFRVEVT 375
Cdd:pfam17482  80 DRVVVNIDVTPVNSMEKLYFTVEVT 104
Phage_sheath_1 pfam04984
Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a ...
 106-272 1.47e-23

Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.


Pssm-ID: 428236  Cd Length: 157  Bit Score: 95.49  E-value: 1.47e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 106 GERTGLQALLDGKSRFNAQPRLLVAPG-HSAQQAVATAMDGLAEKLR------AIAILDGPNSTDeaaVAYAKNFGSKRL 178
Cdd:pfam04984   1 GGVTNPDYLAALAALEGEKFNLIGLPGdDASDNALATEVQAFVKRWReeeglkGIAVLAGPGTAD---YEGIINVSSTYA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890512147 179 FMVDPGVQVWdsatnaarnaPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRpvEFLDGDetcrANLLNNANIATI 258
Cdd:pfam04984  78 ALDGPYITPY----------PAAAWVAGLIAGADVEESDTARPQNLEVTGALDVAP--RLTNEE----RNLLLEAGVFTL 141

                         170
                  ....*....|....*.
gi 1890512147 259 IRD--DGYRLWGNRTL 272
Cdd:pfam04984 142 TVDagDGVRVEGDITT 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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