|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
6.17e-162 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 456.23 E-value: 6.17e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*.
gi 1888361586 321 KPTPFLPTLIALTTLLLPISPFMLMI 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
1.55e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 81.59 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 23 SSHWFFTWVGLEMNMLAFIPVLT-KKMNPRSTEAAIKYFLTQTTASMILLMAIL----------FNNMLSGQWTMTNTTN 91
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISlmynytgtlsFDELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 92 Q-YSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLT-SGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMT----- 164
Cdd:pfam00361 81 LlLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIismll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 165 GSWGGLNQTQLRKILAYSSITHMGWMMAVL----PYNPNMTILNLTIYIILTTTAFLL-LNLNSSTTTLLLSRTWNKLTW 239
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCaGSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1888361586 240 LTPLIPSTLLSLGGLP----PLTGFLPKWAIIE 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLaglpPTAGFLGKFLILA 273
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-297 |
1.57e-17 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 83.07 E-value: 1.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 7 PVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAF-IPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSGQWT 85
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 86 MTNTTNQYSSLM------------IMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISP------ 147
Cdd:TIGR01770 185 FEDLLLFLSNGMlnisllllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLyilfgf 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 148 SLNVSLLLTLSILSIMT-GSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILtttaFLLLNLNSSTT 226
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLiGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFI----YALMSLGAFGV 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 227 TLLLSRT---WNK-------LTWLTPLIPSTLLSLGGLPP----LTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYF 292
Cdd:TIGR01770 341 LSLLRSYkdeWIEyisdfagLFKTNPILAILILIFMFSLAgippLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420
|
....*
gi 1888361586 293 YLRLI 297
Cdd:TIGR01770 421 YLRVV 425
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
15-221 |
3.52e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.09 E-value: 3.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 15 AGTLITALSSHWFFTWVGLEMNMLA-FIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSG-----QWTMTN 88
Cdd:COG1007 113 LGMMLMASANDLLTLFLGLELLSLSlYVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGslnlaGIAAAL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 89 TTNQYSSLMIMMAMAM-------KLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPIS----IMYQISPSLNVSLLLTL 157
Cdd:COG1007 193 AAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGLAADWQLLL 272
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1888361586 158 SILSIMT---GSWGGLNQTQLRKILAYSSITHMGWMM-AVLPYNPNM---TILNLTIYIILTTTAFLLLNL 221
Cdd:COG1007 273 AVLAVLSmtvGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPLGvsaALFYLLAYLFMNLGAFAVILL 343
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
6.17e-162 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 456.23 E-value: 6.17e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*.
gi 1888361586 321 KPTPFLPTLIALTTLLLPISPFMLMI 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
6.97e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 311.37 E-value: 6.97e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*..
gi 1888361586 321 KPTPfLPTLIALTTLLLPISPFMLMIL 347
Cdd:MTH00112 321 KNTL-TATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
3.56e-101 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 301.72 E-value: 3.56e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSlNVSLLLTLSIL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 1888361586 321 KPTPFLPTLIALTTLLLPISPFMLMIL 347
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
6.54e-98 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 293.75 E-value: 6.54e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFeHT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319
|
330 340
....*....|....*....|....*..
gi 1888361586 321 KPTPFLPTLIALTTLLLPISPFMLMIL 347
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-306 |
6.50e-78 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 242.53 E-value: 6.50e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLP 306
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
4.90e-77 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 240.26 E-value: 4.90e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNML 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 81 SGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSIL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 161 SIMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*..
gi 1888361586 321 KpTPFLPTLIALTTLLLPISPFMLMIL 347
Cdd:MTH00200 321 S-NLLVGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
10-347 |
3.24e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 170.39 E-value: 3.24e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 10 YSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMlsgqwtMTNT 89
Cdd:MTH00160 11 LSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLML 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 90 TNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQIspsLNVSLLLTLSILSIMTGSWGG 169
Cdd:MTH00160 85 FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 170 LNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLL 249
Cdd:MTH00160 162 LNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 250 SLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSitllpMSNNVKMKWQFEHTKPTPFLPTL 329
Cdd:MTH00160 242 SLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSL-----MLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*...
gi 1888361586 330 IALTTLLLPISPFMLMIL 347
Cdd:MTH00160 317 FLSFISLFGLILSSLLFL 334
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
13-315 |
2.24e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 157.74 E-value: 2.24e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 13 IFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSGQWtmtnttnq 92
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW-------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 93 YSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIM-TGSWGGLN 171
Cdd:MTH00144 85 FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSAlVGSIGGLN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 172 QTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTtaFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSG--FLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLS 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1888361586 252 GG-LPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKW 315
Cdd:MTH00144 243 LGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
10-299 |
1.13e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 153.40 E-value: 1.13e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 10 YSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAilfnnmLSGQWTMTNT 89
Cdd:MTH00011 12 SSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 90 TNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMTGSWGG 169
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 170 LNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLN----LNSSTTTLLLSRTWNKLTWLTPLIP 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAylnaFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1888361586 246 StllsLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYS 299
Cdd:MTH00011 246 S----LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-317 |
2.38e-37 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 136.34 E-value: 2.38e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 8 VIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLM---AILFNNMLSgqw 84
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLYLS--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 85 tmtnttnQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLnvSLLLTLSILSIMT 164
Cdd:MTH00197 79 -------LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 165 GSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLI 244
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1888361586 245 PSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQF 317
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLL 302
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
16-298 |
1.14e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 95.47 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 16 GTLITALSSHWFFTWVGLEMNMLA-FIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSG----QWTMTNTT 90
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGetsiQGINSILT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 91 NQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVslLLTLSILSIMTGSWGGL 170
Cdd:MTH00199 189 GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNV--VLICAVLSIIYGAIGAL 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 171 NQTQLRKILAYSSITHMGWMMAVLPYNPNMTI----LNLTIYIILTTTAF-LLLNLNSSTTTLL----LSRTwnkltwlT 241
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFILFGVAIGSFESIqaslIYMIIYVIMSICSFsIILSLKLTKGLIVevsgLSRK-------N 339
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1888361586 242 PLIPSTLLSLGGLPP----LTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIY 298
Cdd:MTH00199 340 PVIALTLALTFLSIAgippLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-297 |
4.00e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 90.09 E-value: 4.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 16 GTLITALSSHWFFTWVGLEMNMLA-FIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAI-------------LFNNMLS 81
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 82 GQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPslNVSLLLTLSILS 161
Cdd:MTH00196 85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 162 IMTGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTI----LNLTIYIILTTTAFLLLNLNSSTTTLL--LSRTWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIqaslVYLFIYIIMSICVFSIILALNVYKNLIieFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1888361586 236 KLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLI 297
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
1.55e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 81.59 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 23 SSHWFFTWVGLEMNMLAFIPVLT-KKMNPRSTEAAIKYFLTQTTASMILLMAIL----------FNNMLSGQWTMTNTTN 91
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISlmynytgtlsFDELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 92 Q-YSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLT-SGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMT----- 164
Cdd:pfam00361 81 LlLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIismll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 165 GSWGGLNQTQLRKILAYSSITHMGWMMAVL----PYNPNMTILNLTIYIILTTTAFLL-LNLNSSTTTLLLSRTWNKLTW 239
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCaGSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1888361586 240 LTPLIPSTLLSLGGLP----PLTGFLPKWAIIE 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLaglpPTAGFLGKFLILA 273
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-297 |
1.57e-17 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 83.07 E-value: 1.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 7 PVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAF-IPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSGQWT 85
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 86 MTNTTNQYSSLM------------IMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISP------ 147
Cdd:TIGR01770 185 FEDLLLFLSNGMlnisllllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLyilfgf 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 148 SLNVSLLLTLSILSIMT-GSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILtttaFLLLNLNSSTT 226
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLiGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFI----YALMSLGAFGV 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 227 TLLLSRT---WNK-------LTWLTPLIPSTLLSLGGLPP----LTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYF 292
Cdd:TIGR01770 341 LSLLRSYkdeWIEyisdfagLFKTNPILAILILIFMFSLAgippLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420
|
....*
gi 1888361586 293 YLRLI 297
Cdd:TIGR01770 421 YLRVV 425
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
15-221 |
3.52e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.09 E-value: 3.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 15 AGTLITALSSHWFFTWVGLEMNMLA-FIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSG-----QWTMTN 88
Cdd:COG1007 113 LGMMLMASANDLLTLFLGLELLSLSlYVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGslnlaGIAAAL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 89 TTNQYSSLMIMMAMAM-------KLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPIS----IMYQISPSLNVSLLLTL 157
Cdd:COG1007 193 AAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGLAADWQLLL 272
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1888361586 158 SILSIMT---GSWGGLNQTQLRKILAYSSITHMGWMM-AVLPYNPNM---TILNLTIYIILTTTAFLLLNL 221
Cdd:COG1007 273 AVLAVLSmtvGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPLGvsaALFYLLAYLFMNLGAFAVILL 343
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
13-224 |
2.27e-14 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 73.70 E-value: 2.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 13 IFAGTLITALsshwfftwVGLEMNMLA-FIPVLTKKMNPRSTEAAIKYFLTQTTASMILL--MAILF----NNMLSGQWT 85
Cdd:PRK05777 120 VSANDLLTLF--------LGLELLSLPlYALAALRRDRRRSLEAAIKYFVLGALASGFLLygMSLLYgatgSLSFAGIAK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 86 MTNTTNQYSSL------MIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIM----YQISPSLNVSLLL 155
Cdd:PRK05777 192 ALADGSGNSLLllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllVVAFGGLSEDWQQ 271
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1888361586 156 TLSILSIMT---GSWGGLNQTQLRKILAYSSITHMGWMM-AVLPYNPNM---TILNLTIYIILTTTAFLLLNLNSS 224
Cdd:PRK05777 272 VLAIIAIASmlvGNLAALSQTNIKRLLAYSSIAHAGYLLvGLAAGTAEGysaVLFYLLAYLFMTLGAFGVISLLRR 347
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-301 |
5.87e-10 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 60.16 E-value: 5.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 15 AGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSGQWTMTNTTNQYS 94
Cdd:COG0651 118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLA 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 95 SL----------MIMMAMAMKLGMAPFHFWVPEVTQGTP-----LTSGLLLltwqKLAPISIM---YQISPSLNVSLLLT 156
Cdd:COG0651 198 ELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLT----KVGVYAILrvlTLLFGADPALFLGT 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 157 LSILSIM----TGSWGGLNQTQLRKILAYSSITHMGWMMAVLPynpnmtilnltIYIILTTTAFLLLNLNSSTTTLLL-- 230
Cdd:COG0651 274 LLLVLGLltmlVGALGALAQRDLKRLLAYSSVSQIGYILLGLG-----------LGTPLGLAGALFHLLNHALAKALLfl 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 231 ----------SRTWNKLTWLTPLIPSTLLSLGGLPP-------LTGFLPKWAIIEEFTKNNSLIIPTIMAIITLLNLYFY 293
Cdd:COG0651 343 aagaieratgTRDLDKLGGLGKRMPLTAAAFLIGALalaglppLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422
|
....*...
gi 1888361586 294 LRLIYSTS 301
Cdd:COG0651 423 VRIFGRAQ 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
16-191 |
5.07e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 54.48 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 16 GTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRST---------EAAIKYFLTQTTASMILLM--AILFN------- 77
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcALYFGftgnegm 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 78 --NMLSGQWTMTNTTNQYSSL---MIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMyqISPSLNVS 152
Cdd:MTH00198 280 lgTILSATLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSK 357
|
170 180 190
....*....|....*....|....*....|....*....
gi 1888361586 153 LLLTLSILSIMTGSWGGLNQTQLRKILAYSSITHMGWMM 191
Cdd:MTH00198 358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-192 |
2.37e-07 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 52.01 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 55 AAIKYFLTQTTASMILLMAILFNNMLSGQWTM---TNTTNQYSS-------LMIMMAMAMKLGMAPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTFdiaELAAAPLPLtaqlllfLAFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 120 QGTPLTSGLLL----------------LTWQKLAP-------ISIMYqispslnvsllltlsilsimtGSWGGLNQTQLR 176
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPllaalgvIGIIY---------------------GALVALAQTDLK 300
|
170
....*....|....*.
gi 1888361586 177 KILAYSSITHMGWMMA 192
Cdd:COG1008 301 RLIAYSSVSHMGFVLL 316
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
55-191 |
1.33e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 49.94 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 55 AAIKYFLTQTTASMILLMAILFNNMLSG---------QWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEV-----TQ 120
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAhveapTA 236
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1888361586 121 GTPLTSGLLLltwqKLAPISIM---YQISPSLNVSLLLTLSILSIMT---GSWGGLNQTQLRKILAYSSITHMGWMM 191
Cdd:TIGR01972 237 GSVILAGVLL----KMGTYGFLrfnLPLFPDASLYFAPVLAALGVIAiiyGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
47-191 |
2.24e-06 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 49.28 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 47 KMNPRSTEAAIKYFLTQTTASMILLMAILFNNMLSGQWTMTNTTNQY----SSLMIMMAM-------AMKLGMAPFHFWV 115
Cdd:PRK02504 154 KRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAIALAlitsPSLGLALALvfviagiAFKISAVPFHQWT 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 116 PEVTQGTPLTSGLLLLTWQKLA----PISIMYQISPSLNVSLLLTLSILSIMTGSWG---GLNQTQLRKILAYSSITHMG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQWKLLFTALAILSMVLGnvvALAQTSMKRMLAYSSIGQAG 313
|
...
gi 1888361586 189 WMM 191
Cdd:PRK02504 314 FVM 316
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-221 |
2.33e-06 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 49.23 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 51 RSTEAAIKYFLTQTTASMILLMAI---------------LFNNMLSGQwtMTNTTNQYSSLM-IMMAMAMKLGMAPFHFW 114
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFswlyglsggeielqeIVNGLINTQ--MYNSPGISIALIfITVGIGFKLSLAPFHQW 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 115 VPEVTQGTPLTSGLLLLTWQKLA----PISIMYQISPSLNVSLLLTLSILSIMTGSWGGL---NQTQLRKILAYSSITHM 187
Cdd:CHL00049 237 TPDVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNEWHLLLEILAILSMILGNLiaiTQTSMKRMLAYSSIGQI 316
|
170 180 190
....*....|....*....|....*....|....*
gi 1888361586 188 GWMM-AVLPYNPNMTILNLTIYIILtttaFLLLNL 221
Cdd:CHL00049 317 GYVIiGIIVGDSNDGYASMITYMLF----YIFMNL 347
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
2.07e-05 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 41.47 E-value: 2.07e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1888361586 291 YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
49-194 |
9.62e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 44.10 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 49 NPRSTEAAIKYFLTQTTASMILLMAILFNNMLSGQWTMT--------NTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ 120
Cdd:PRK08375 151 DRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMAdlagalaeNPTVVTAFGFVLLALALKAAVFPLHTWLPRAYP 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 121 GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMT----------GSWGGLNQTQLRKILAYSSITHMGWM 190
Cdd:PRK08375 231 AAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLavlallsmlvGSLAALGQDDVKRVLAYSTVSQMGYI 310
|
....
gi 1888361586 191 MAVL 194
Cdd:PRK08375 311 LLGL 314
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
15-191 |
1.85e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 43.16 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 15 AGTLITALSSHWFFTWVGLEMNMLA-FIPVLTKKMNPRSTEAAIKYFLTQTTASMILLMAIlfnNMLSGQWTMTN----- 88
Cdd:PRK08376 132 LGMLGMAITGDLFNFFVFLEIMSIAsYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmayla 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 89 ---TTNQYSSLMIMMA-----MAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTwQKLAPISIMYQIS-----PSLNVSL-- 153
Cdd:PRK08376 209 vkmSENPTVVAKIALAlfiagLAMKSGAVPVHMWLPDAYPAAPSSISAMLLV-IKQAGLYALARVLfsiygPAINLATvg 287
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1888361586 154 --LLTLSILSIMTGSWGGLNQTQLRKILAYSSITHMGWMM 191
Cdd:PRK08376 288 wvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-191 |
2.67e-04 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 42.50 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 55 AAIKYFLTQTTASMILLMAILFnnMLSGQWTMTNTTNqYSSLM---------------IMMAMAMKLGMAPFHFWVPEV- 118
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIIY--LVVVYYNATGTFD-IADLLnlplppgvqywlflaFFIAFAVKMPMFPLHTWLPDAh 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 119 ----TQGTPLTSGLLLltwqKLAP---ISIMYQISPSLNVSLLLTLSILSIMT---GSWGGLNQTQLRKILAYSSITHMG 188
Cdd:PRK05846 239 vqapTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMG 314
|
...
gi 1888361586 189 WMM 191
Cdd:PRK05846 315 FVT 317
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
54-188 |
5.95e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 41.45 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 54 EAAIKYFLTQTTASMILLMAI--LFN--------NMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEV----- 118
Cdd:MTH00226 182 QAAYYFFFYTLIGSVLMLLCLfsLYNihgttdylTLASCSHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAhveap 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888361586 119 TQGTPLTSGLLL---------LTW-------QKLAPISIMYQIspslnvsllltlsiLSIMTGSWGGLNQTQLRKILAYS 182
Cdd:MTH00226 262 VAGSVLLAGILLklggyglvrLSWpilplgaQNLAPAVIAMGI--------------VGIVYGSFATCRQIDVKRLVAYS 327
|
....*.
gi 1888361586 183 SITHMG 188
Cdd:MTH00226 328 SVAHMG 333
|
|
| |
