|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-352 |
3.14e-115 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 341.36 E-value: 3.14e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 1 MLKLVFFLMFLLPLCFINNMFWMVQVLLFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLASESVY 80
Cdd:MTH00163 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 81 KYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFY 160
Cdd:MTH00163 81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 161 FMNKTYTMNFYLLNNYMFNYDLLYFCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQM 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 241 MNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANV 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
|
330 340 350
....*....|....*....|....*....|..
gi 188502498 321 SYERLGSRSLLINKGLLNFMPVMALWWFLLSS 352
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSS 352
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
39-352 |
3.20e-88 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 271.33 E-value: 3.20e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 39 NNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLASESVYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFES 118
Cdd:MTH00150 7 YSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 119 SLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYL---LNNYMFNYDLLYFCMMSAFLVKM 195
Cdd:MTH00150 87 SLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLissLRKLLSSMGLWGLLVFLAFLVKL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 196 PMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIA 275
Cdd:MTH00150 167 PMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIA 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 188502498 276 YSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLSS 352
Cdd:MTH00150 247 YSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCI 323
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
1-352 |
6.95e-85 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 263.91 E-value: 6.95e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 1 MLKLVFFLMFLLPLCFINNMFWMVQVLLFFMSFLFLLMNNFmnYWMNISY-----FLGVDMLSYGLILLSLWICSLMLLA 75
Cdd:MTH00014 1 MLKLIMPLISLLLLPLIKYPWSWALTFSTLLLLSLFTLLNL--YPMSAPYsmfteSLSSDMLSAPLITLTLWITALMILA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 76 SESVYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPML 155
Cdd:MTH00014 79 SFKIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 156 IGIFYFMNKTYTMNFYLLNNY---MFNYDLLYFCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGML 232
Cdd:MTH00014 159 MSILLIFYTNNSLSMLMSSMEppsIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 233 RVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSS 312
Cdd:MTH00014 239 RMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSS 318
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 188502498 313 GLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLSS 352
Cdd:MTH00014 319 ALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSA 358
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
2-352 |
2.07e-83 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 259.91 E-value: 2.07e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 2 LKLVFFLMFLLPLCFINNMFW--MVQVLLFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLASESV 79
Cdd:MTH00205 1 MSIFGVFSLLIILFVLKFKDWsfFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 80 YKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIF 159
Cdd:MTH00205 81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 160 YFMNKTYTMNFYLLNNYMFNYDLLY---FCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVS 236
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFYLFlywIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 237 ILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFC 316
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 188502498 317 LANVSYERLGSRSLLINKGLLNFMPVMALWWFLLSS 352
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLIS 356
|
|
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
42-351 |
1.48e-82 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 258.20 E-value: 1.48e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 42 MNYWMNISYFLGVDMLSYGLILLSLWICSLMLLASESVYKYN--NYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESS 119
Cdd:MTH00124 46 YYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILASQNHLQHEplQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEAT 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 120 LIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLL---NNYMFNY---DLLYFCMMSAFLV 193
Cdd:MTH00124 126 LIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLqltHPTLTNSwtnLLLWLACLMAFMV 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 194 KMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKAL 273
Cdd:MTH00124 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSL 285
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 188502498 274 IAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLS 351
Cdd:MTH00124 286 IAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLAN 363
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
1-352 |
1.02e-80 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 253.36 E-value: 1.02e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 1 MLKLVFFLMFLLPLCFI--NNMFW---MVQVLLFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLA 75
Cdd:MTH00044 1 MITLILLSLGIAITSWIvpKNKLWpisISQSSLISLLSLFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 76 SESVYKYNNYKN--LFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLP 153
Cdd:MTH00044 81 SINHLSNNSPNNqrTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 154 MLIGIFYFMNKTYTMNFYLLN------NYMFNYDLLYFCMMSAFLVKMPMFLVHLW*************MILAGIMLKLG 227
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSElnwltsLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 228 GYGMLRVVSILQMMNLKY-SFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIA 306
Cdd:MTH00044 241 GYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 188502498 307 HGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLSS 352
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCA 366
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
1-349 |
1.74e-77 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 245.21 E-value: 1.74e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 1 MLKLVFFLMFLLPLCFINNMFWMVQVL----LFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLAS 76
Cdd:MTH00068 1 MLKIIIPTLMLLPTTWLSPKKWLWTLTttnsLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 77 ESVYKYN--NYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPM 154
Cdd:MTH00068 81 QNHLKNEpiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 155 LIGIFYFMNKTYTMNFYLLNNYMFNYDLLY-------FCMMsAFLVKMPMFLVHLW*************MILAGIMLKLG 227
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYtnkiwwlACLL-AFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 228 GYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAH 307
Cdd:MTH00068 240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 188502498 308 GLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFL 349
Cdd:MTH00068 320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLL 361
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
1-351 |
2.00e-77 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 244.80 E-value: 2.00e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 1 MLKLVFFLMFLLPLCFI--NNMFWMVQVL--LFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLAS 76
Cdd:MTH00110 1 MLKIIIPTIMLIPLTWLskNNMIWINTTTysLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 77 ESVYKYNNY--KNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPM 154
Cdd:MTH00110 81 QHHLSKEPLtrKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 155 LIGIFYFMNKTYTMNFYL-------LNNYMFNYDLLYFCMMsAFLVKMPMFLVHLW*************MILAGIMLKLG 227
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLLWLACMM-AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 228 GYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAH 307
Cdd:MTH00110 240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 188502498 308 GLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLS 351
Cdd:MTH00110 320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLAS 363
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
6-351 |
3.36e-71 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 228.67 E-value: 3.36e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 6 FFLMFLLPLCFINNMFWMVQVLLFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLASESVYKYN-- 83
Cdd:MTH00206 9 LLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNEpi 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 84 NYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFY--- 160
Cdd:MTH00206 89 NRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFlqn 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 161 FMNKTYTMNFYLLNNYMFNYDLLYFCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQM 240
Cdd:MTH00206 169 SLGSLSLYILYFSKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 241 MNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANV 320
Cdd:MTH00206 249 STKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANL 328
|
330 340 350
....*....|....*....|....*....|.
gi 188502498 321 SYERLGSRSLLINKGLLNFMPVMALWWFLLS 351
Cdd:MTH00206 329 LYERSHTRTILGNRGLQMILPLLSFWWLLFF 359
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
45-351 |
3.45e-67 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 218.29 E-value: 3.45e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 45 WMNISYFLGVDMLSYGLILLSLWICSLMLLASES--VYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIP 122
Cdd:MTH00127 50 WSSLNLYMATDPLSTPLLVLTCWLLPLMILASQNhtAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 123 TLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDLLYF-------CMMsAFLVKM 195
Cdd:MTH00127 130 TLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQLSSWAdklwwagCLL-AFLVKM 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 196 PMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIA 275
Cdd:MTH00127 209 PLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIA 288
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 188502498 276 YSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLS 351
Cdd:MTH00127 289 YSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIAS 364
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
47-344 |
1.77e-52 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 180.66 E-value: 1.77e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 47 NISYFLGVDMLSYGLILLSLWICSLMLLASESVYKYNNykNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFL 126
Cdd:COG1008 73 GISYHLGVDGISLPLVLLTALLTPLAILASWNEIKKRP--KLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 127 ILGWGYqPERLQAGIYLLFYTLLVSLPMLIGIF--YFMNKTYTMNFYLLNNYMFNYD---LLYFCMMSAFLVKMPMFLVH 201
Cdd:COG1008 151 IGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalYFLAGALTFDIAELAAAPLPLTaqlLLFLAFFIAFAVKVPMFPFH 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 202 LW*************MILAGIMLKLGGYGMLRVVsiLQMMN---LKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSS 278
Cdd:COG1008 230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA--LPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 188502498 279 VAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMA 344
Cdd:COG1008 308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLA 373
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
47-344 |
3.63e-49 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 171.92 E-value: 3.63e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 47 NISYFLGVDMLSYGLILLSLWICSLMLLASESVYKynNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFL 126
Cdd:PRK05846 73 GISYHLGVDGISLLLVVLTALLTPLAVLASWEEIK--KRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 127 ILGWGYqPERLQAGIYLLFYTLLVSLPMLIGIFY----FMNKTYTMNFYLLNNYMFNYD---LLYFCMMSAFLVKMPMFL 199
Cdd:PRK05846 151 IGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLLNLPLPPGvqyWLFLAFFIAFAVKMPMFP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 200 VHLW*************MILAGIMLKLGGYGMLRVVsiLQMM---NLKYSFIWISISLVGGVLVSLICLRQTDLKALIAY 276
Cdd:PRK05846 230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFS--LPLFpdaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAY 307
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 188502498 277 SSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMA 344
Cdd:PRK05846 308 SSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLA 375
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
106-350 |
1.13e-46 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 160.17 E-value: 1.13e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 106 SMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYD---- 181
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 182 --LLYFCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWISISLVGGVL 259
Cdd:pfam00361 81 llLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 260 VSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLA-NVSYERLGSRSLLINKGLLN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240
|
250
....*....|..
gi 188502498 339 FMPVMALWWFLL 350
Cdd:pfam00361 241 TMPILALVFLVA 252
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
47-344 |
2.42e-43 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 155.87 E-value: 2.42e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 47 NISYFLGVDMLSYGLILLSLWICSLMLLASEsvYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFL 126
Cdd:TIGR01972 68 GISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLL 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 127 ILGWGyQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYtMNFYLLNNYMFNYD-----LLYFCMMSAFLVKMPMFLVH 201
Cdd:TIGR01972 146 IGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGG-GTFDLLELLNLPLPfgvqtWLFLAFFIAFAVKVPLFPLH 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 202 LW*************MILAGIMLKLGGYGMLRVvsILQMM---NLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSS 278
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRF--NLPLFpdaSLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 188502498 279 VAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMA 344
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLA 367
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
51-351 |
2.44e-40 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 147.90 E-value: 2.44e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 51 FLGVDMLSYGLILLSLWICSLMLLASESVYKYnnYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGW 130
Cdd:MTH00204 78 VFAVDGVSLFFILLTTLLIPICILISWKSIKF--LFKEFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIW 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 131 GYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDLLYFCMMSAFL---VKMPMFLVHLW**** 207
Cdd:MTH00204 156 GSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLSIQKWLLVGFFLslaVKIPQIPFHIWLPQA 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 208 *********MILAGIMLKLGGYGMLRVV-SILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVL 286
Cdd:MTH00204 236 HVEAPVAGSVILAGILLKLGGYGFLRFSwPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVP 315
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 188502498 287 AGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLS 351
Cdd:MTH00204 316 LGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLS 380
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
104-350 |
5.07e-37 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 139.03 E-value: 5.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 104 FSSMNLFMFYLFFESSLIPtLFLILG-WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDL 182
Cdd:MTH00217 126 FTILDLVGFYILFEGILIP-MFLIIGiWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCCLKIEKEL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 183 LYFCMMSAFL---VKMPMFLVHLW*************MILAGIMLKLGGYGMLRVV-SILQMMNLKYSFIWISISLVGGV 258
Cdd:MTH00217 205 QYFIFLGFFLslaIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSwPLLPEASEYFSPLIQTLSLLAII 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 259 LVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLN 338
Cdd:MTH00217 285 YGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVI 364
|
250
....*....|..
gi 188502498 339 FMPVMALWWFLL 350
Cdd:MTH00217 365 TMPLFGILMLLL 376
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
52-344 |
4.89e-33 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 128.12 E-value: 4.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 52 LGVDMLSYGLILLSLWICSLMLLASESVYKYnnYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPtLFLILG-W 130
Cdd:MTH00226 98 FAVDGISIYFIILTGFIVPCSILISWHSVKY--LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIP-MYLILGiW 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 131 GYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLL--NNYMFNYDLLYFCMMSAFL---VKMPMFLVHLW** 205
Cdd:MTH00226 175 GSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLasCSHVVSEQTQKWIFLGIFLamaVKIPIFPFHIWLP 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 206 ***********MILAGIMLKLGGYGMLRVV-SILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGI 284
Cdd:MTH00226 255 KAHVEAPVAGSVLLAGILLKLGGYGLVRLSwPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGL 334
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 285 VLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMA 344
Cdd:MTH00226 335 VSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWG 394
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
46-352 |
2.74e-31 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 123.22 E-value: 2.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 46 MNISYFLGVDMLSYGLILLSLWICSLMLLASesvYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLF 125
Cdd:PRK12561 49 IGLEWSLGVDGLSMPLVLLSGLITTLSIFAS---WKVTRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 126 LILGWGYQpERLQAGIYLLFYTLLVSLPMLIG----IFYFMNKTYTMNFYLLNNYMFNYDLL-YFCMMSAFLVKMPMFLV 200
Cdd:PRK12561 126 LISIWGGQ-KRLYAATKFILYTALASIFILVAglalALSGDTFTFDLAELGAKSYPLALELLlYAGFLIAFGVKLPIFPL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 201 HLW*************MILAGIMLKLGGYGMLRV-VSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSV 279
Cdd:PRK12561 205 HTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSV 284
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 188502498 280 AHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMP-VMALwwFLLSS 352
Cdd:PRK12561 285 SHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPkTFAL--FTASS 356
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
45-341 |
2.80e-27 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 111.96 E-value: 2.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 45 WMNISYF---LGVDMLSYGLILLSLWICSLMLLASESVYKYNNyknLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLI 121
Cdd:CHL00011 70 WINFFDFhwrLGIDGLSIGPILLTGFITTLATLAAWPVTRNSR---LFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELI 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 122 PTLFLILGWGYQpERLQAGIYLLFYTLLVSLPMLIGIFyfmnktyTMNFYLLNNYMFNYD-------------LLYFCMM 188
Cdd:CHL00011 147 PVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVL-------GMGLYGSNEPTLNFEtlanqsypvaleiLFYIGFL 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 189 SAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRV-VSILQMMNLKYSFIWISISLVGGVLVSLICLRQ 267
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQ 298
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 188502498 268 TDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMP 341
Cdd:CHL00011 299 RNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMP 372
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
104-350 |
1.28e-26 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 108.84 E-value: 1.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 104 FSSMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFyfmnKTYTMNFYLLNNYMFNYDLL 183
Cdd:MTH00094 79 FVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYL----KNFFFFSLCYFDFFLSWEMF 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 184 YFCMMSaFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRvvsILQMMNLKYSFIWISISLVGGVLVSLI 263
Cdd:MTH00094 155 FILSLS-FMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLR---ILGSLNFVYNNFWIIFSLLGMILSSFC 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 264 CLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVM 343
Cdd:MTH00094 231 CVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFF 310
|
....*..
gi 188502498 344 ALWWFLL 350
Cdd:MTH00094 311 GLIFSLV 317
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
52-351 |
4.47e-26 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 107.93 E-value: 4.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 52 LGVDMLSYGLILLSLWICSLMLLASESVYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWG 131
Cdd:COG0651 72 LVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 132 YqPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYD-----LLYFCMMSAFLVKMPMFLVHLW*** 206
Cdd:COG0651 152 T-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDpglllAAFALLLVGFGIKAALFPLHFWLPD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 207 **********MILAGIMLKLGGYGMLRVVSIL--QMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGI 284
Cdd:COG0651 231 AYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGY 310
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 188502498 285 VLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFLLS 351
Cdd:COG0651 311 ILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGA 377
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
52-346 |
1.48e-25 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 107.10 E-value: 1.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 52 LGVDMLSYGLILLSLWICSLMLLASESVykynNYK-NLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGW 130
Cdd:PRK02546 83 VGADGLSMPLILLTGFITTLAVLAAWPV----TFKpKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIW 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 131 GYQpERLQAGIYLLFYTLLVSLPMLIGI----FYFMNKTYTMNFYLLNNYMFNYDLL-YFCMMSAFLVKMPMFLVHLW** 205
Cdd:PRK02546 159 GGK-KRQYAATKFILYTAGSSLFILLAAlamaFYGDTPTFDMTALAAKDFGLGFQLLcYAGLLIAYGVKLPIVPLHTWLP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 206 ***********MILAGIMLKLGGYGMLRV-VSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGI 284
Cdd:PRK02546 238 DAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 188502498 285 VLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVM-ALW 346
Cdd:PRK02546 318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMfAMW 380
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
48-338 |
2.15e-23 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 100.93 E-value: 2.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 48 ISYFLGVDMLSYGLILLSLWICSLMLLAS-ESVYKYNNYknlfLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFL 126
Cdd:PRK06473 71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSSdESIQRPRFY----YSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 127 ILGWGYQpERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYD-----LLYFCMMSAFLVKMPMFLVH 201
Cdd:PRK06473 147 IAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPlstqlLLLAPILVGFGIKIPLVPFH 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 202 LW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLIC-LRQTDLKALIAYSSVA 280
Cdd:PRK06473 226 TWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIG 305
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 188502498 281 HMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLN 338
Cdd:PRK06473 306 HMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
48-338 |
8.33e-20 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 90.16 E-value: 8.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 48 ISYFLGVDMLSYGLILLSlwiCSLMLLASESVYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLI 127
Cdd:PRK07363 71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 128 LGWGYQpERLQAGIYLLFYTLLVSLPML---IGIFYFMNKT-YTMNFYLLNNYMFNYDLLYFCM-MSAFLVKMPMFLVHL 202
Cdd:PRK07363 148 AIWGGE-KRGYASIKFLIYTAVSGLLVLaafLGIVWLSGSTsFDYDAISTQNLSLNTQLILLTGlLLGFGIKIPLVPLHT 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 203 W*************MILAGIMLKLGGYGMLRVVsiLQMMNLKYSFIWISISLVGGVLV---SLICLRQTDLKALIAYSSV 279
Cdd:PRK07363 227 WLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG--LQLFPQTWSLVAPGLAIIGTISViygALSAIAQKDIKRMVAYSSI 304
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 188502498 280 AHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLN 338
Cdd:PRK07363 305 GHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMN 363
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
104-351 |
7.70e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 72.22 E-value: 7.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 104 FSSMNLFMFYLFFESSLIPTLFLIlGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDLL 183
Cdd:PRK08375 123 LLTADLFNLFVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPTV 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 184 ----YFCMMsAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVS----ILQMMNLKYSFIWISISLV 255
Cdd:PRK08375 202 vtafGFVLL-ALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALL 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 256 GGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKG 335
Cdd:PRK08375 281 SMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSG 360
|
250
....*....|....*.
gi 188502498 336 LLNFMPVMALWWFLLS 351
Cdd:PRK08375 361 LGRRMPLTAAAFAVAS 376
|
|
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
55-343 |
3.75e-13 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 69.95 E-value: 3.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 55 DMLSYGLILLSLWICslmllASESVYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLFLILGWGYQP 134
Cdd:MTH00062 44 DSLSFYLILLVLFLG-----LYSQVMFYNLLSGVSRFFLFLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYS 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 135 ERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDLLYFCMMSAFLVKMPMFLVHLW*********** 214
Cdd:MTH00062 119 ERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSP 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 215 **MILAGIMLKLGGYGMLRVVSILqmmNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSY 294
Cdd:MTH00062 199 VSIFLSGYIMKLGLLGVYRFCGFI---FSGSFLGYLFLCCLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDW 275
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 188502498 295 WGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVM 343
Cdd:MTH00062 276 SSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVL 324
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
104-315 |
1.78e-10 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 61.94 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 104 FSSMNLFMFYLFFESSLIPTLFLILgWGYQPERLQAGIYLLFyTLLVSLPMLIGIFYFMNKTYTMNF-----YLLNNYMF 178
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFadisqGLINDTST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 179 NYDLLYFCMMSAF-LVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWIS------ 251
Cdd:PRK08668 193 GFALIVFLFLLAFgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLFSEFGTYRgvplfn 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 188502498 252 --ISLVGGVLV---SLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLF 315
Cdd:PRK08668 273 yiLAWLGNISIivgTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
41-349 |
2.43e-09 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 58.59 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 41 FMNYWMNISYFLGVDMLSYGLILLslwICSLMLLASESVYKYNNY------KNLFLLNVVMLLLLLVLTFSSMNLFMFYL 114
Cdd:PRK08667 62 LWGIAPGLDITFHIDRLAAFFIIL---IGLVSLCVAIYSLGYNEHmssnerANLLSALTALFILSMLGVVASANTFSFLF 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 115 FFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDLLYFCMMSAFLVK 194
Cdd:PRK08667 139 FWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGIK 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 195 MPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALI 274
Cdd:PRK08667 219 AGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 275 AYSSVAHMGIVLAGLLTMSYWGLTGSYSLM-----------IAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVM 343
Cdd:PRK08667 299 AYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYT 378
|
....*.
gi 188502498 344 ALWWFL 349
Cdd:PRK08667 379 SALFLV 384
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
187-345 |
7.79e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 56.90 E-value: 7.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 187 MMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVV-------SILQMMNLKYSFIWISISLVGGVL 259
Cdd:PRK12667 229 ALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLytifgisPSLIDFRAALSPILIILGAVSAII 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 260 VSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNF 339
Cdd:PRK12667 309 GALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRK 388
|
....*.
gi 188502498 340 MPVMAL 345
Cdd:PRK12667 389 MPIASF 394
|
|
| Oxidored_q5_N |
pfam01059 |
NADH-ubiquinone oxidoreductase chain 4, amino terminus; |
1-87 |
1.24e-08 |
|
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
Pssm-ID: 366442 [Multi-domain] Cd Length: 110 Bit Score: 52.14 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 1 MLKLVFFLMFLLPLCFINNMFWM-----VQVLLFFMSFLFLLMNNFMNYWMNISYFLGVDMLSYGLILLSLWICSLMLLA 75
Cdd:pfam01059 1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
|
90
....*....|..
gi 188502498 76 SESVYKYNNYKN 87
Cdd:pfam01059 81 SQKHLKSEPNNR 92
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
221-350 |
7.50e-08 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 54.12 E-value: 7.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 221 GIMLKLGGYGMLRVV-SILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGL-LTM------ 292
Cdd:PRK06521 250 GVMLKVAIYGILRVVfDLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLgLAMvfiayg 329
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 188502498 293 ----SYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMAlWWFLL 350
Cdd:PRK06521 330 mpllAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTA-WAFLI 390
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
103-324 |
8.74e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 53.42 E-value: 8.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 103 TFSSMNLFMFYLFFESSLIPTlFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDL 182
Cdd:PRK07234 110 AFVCADLISLYVALEVLSIAT-FLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 183 LYFcmmSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILqmmnlkySFIWISISLVGG---VL 259
Cdd:PRK07234 189 LIA---LGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDV-------PGLDLIVRIFGVgtaLL 258
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 188502498 260 VSLICLRQTDLKALIAYSSVAHMGIVLAGLLTmsywglTGSYSLmiAHGLCSSGLFCLANVSYER 324
Cdd:PRK07234 259 GVLFALLEKDLKRMLAFSTISQLGFILAAPLV------GGLYAL--AHGLVKSTLFLCAGALPSR 315
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
103-349 |
1.73e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 52.66 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 103 TFSSMNLFMFYLFFESSLIPTlFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYD- 181
Cdd:PRK12665 127 AFLAGDLFNLYVGFEILLVAS-YVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVRLDELPs 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 182 ----LLYFCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSIL----QMMNLkysFIWISI- 252
Cdd:PRK12665 206 gtrtALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLfpggGLDTL---LMVVALl 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 253 SLVGGVLVSLIclrQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLI 332
Cdd:PRK12665 283 TMVVGILGAIA---QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRR 359
|
250
....*....|....*..
gi 188502498 333 NKGLLNFMPVMALWWFL 349
Cdd:PRK12665 360 LGGLAKASPLLAVLFFV 376
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
50-330 |
1.70e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 49.43 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 50 YFLGVDMLSYGLILLS----LWICSLMLLASESVYKYNNYKNLFLLNVVMLLLLLVLTFSSMNLFMFYLFFESSLIPTLF 125
Cdd:PRK06589 75 YSIGLHLEPLGLIFLLligfLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAF 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 126 LIlGWGYQPERLQAGI-YLLFYTLLVSLPMLIGIFYFMNKTYTMNFYLLNNYMFNYDLLYFCMMSAFLVKMPMFLVHLW* 204
Cdd:PRK06589 155 LI-GHTRNNISLSGGYkYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWL 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 205 ************MILAGIMLKLGGYGMLRV------VSILQMMNLKYSFIwISISLVGGVLVSLICLRQTDLKALIAYSS 278
Cdd:PRK06589 234 PAAMVAHYPVSALLHAVIVVKTGLFCIYKIllyifgLSYLQRIFAEFNWL-IFIPIVSIFYSSLKALKTDNIKKILAYST 312
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 188502498 279 VAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSL 330
Cdd:PRK06589 313 ISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQV 364
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
106-345 |
2.38e-06 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 49.37 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 106 SMNLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIG--IFYFMNKTYTMNFYLLNNYMFNYDLL 183
Cdd:PRK12646 129 SDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGfiMLYIMTGTNNITEILGQADHIKNHGL 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 184 YFCMMSAFLV----KMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNLkYSFIWISISLVGGVL 259
Cdd:PRK12646 209 FIPMIFMFLLgaftKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNM-YIYIVTFVGLITMLF 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 260 VSLICLRQTDLKALIAYSSVAHMGIVLA--GLLTMSYWGLTGSYSL------------MIAHGLCSSGLFCLANVSYERL 325
Cdd:PRK12646 288 GSITALKQWDLKGILAYSTISQLGMIMAmvGIGGGYAQHQQDAIASiyvfvlfaalfhLMNHAIFKCALFMGVGIIDHEA 367
|
250 260
....*....|....*....|
gi 188502498 326 GSRSLLINKGLLNFMPVMAL 345
Cdd:PRK12646 368 GTRDIRILSGMRQLFPKMNL 387
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
220-345 |
2.50e-06 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 48.99 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 220 AGIMLKLGGYGMLRVVSILQMMNLKYSFIW--ISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGL 297
Cdd:PRK08377 245 SAFVVKAGLYAMARILYLMQNANGWSSVLKlvIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGV 324
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 188502498 298 TGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMAL 345
Cdd:PRK08377 325 DAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTAL 372
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
187-344 |
2.54e-06 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 48.98 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 187 MMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVVSILQMMNL--KYSFIWISISLVGGVLVSLIC 264
Cdd:PRK08676 212 IFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAaeQFSNVLIGLGIFSIAVAAFSM 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 265 LRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMA 344
Cdd:PRK08676 292 LSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAA 371
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
185-351 |
4.26e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 48.19 E-value: 4.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 185 FCMMSAFLVKMPMFLVHLW*************MILAGIMLKLGGYGMLRVV-----SILQMMNLKYSFIWISISLVGGVL 259
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVydvfkANFVFTTLPFNNVFMILAALAIVF 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 260 VSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNF 339
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372
|
170
....*....|..
gi 188502498 340 MPVMALWWFLLS 351
Cdd:PRK12662 373 MPKITLAFVLLS 384
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
220-342 |
4.59e-06 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 48.50 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 220 AGIMLKLGGYGMLRVvSILQMMNLKYSFIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTG 299
Cdd:PRK12650 247 AAAVVKAGIYLLLRF-SPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTA 325
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 188502498 300 SYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPV 342
Cdd:PRK12650 326 AVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPF 368
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
261-352 |
6.09e-06 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 48.00 E-value: 6.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 261 SLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFM 340
Cdd:PRK06458 296 AFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVS 375
|
90
....*....|..
gi 188502498 341 PVMAlWWFLLSS 352
Cdd:PRK06458 376 PLTG-WGLMLGA 386
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
265-345 |
8.72e-06 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 47.42 E-value: 8.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 265 LRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLF-CLANVSYERLGSRSLLINKGLLNFMPVM 343
Cdd:COG1007 288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLL 367
|
..
gi 188502498 344 AL 345
Cdd:COG1007 368 AL 369
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
108-341 |
1.96e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 46.24 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 108 NLFMFYLFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYFMNKTYTMNF-YLLNNYMFNYDLLYFC 186
Cdd:PRK08376 142 DLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaYLAVKMSENPTVVAKI 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 187 MMSAFLVKMPM----FLVHLW*************MILagIMLKLGG-YGMLRVVSILQMMNLKYSFI-WISI-----SLV 255
Cdd:PRK08376 222 ALALFIAGLAMksgaVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVLFSIYGPAINLATVgWVIIilgclTMF 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 256 GGVLVSLIclrQTDLKALIAYSSVAHMGIVLAGL---------LTMSYWG---LTGSYSLMIAHGLCSSGLFCLANVSYE 323
Cdd:PRK08376 300 VGVAMAVV---QKDVKRLLAYHSVSQIGYMLLGLgvglaalgdPAMASYGeiaLAGGIYHIVNHALYKALLFLTAGAVIY 376
|
250
....*....|....*...
gi 188502498 324 RLGSRSLLINKGLLNFMP 341
Cdd:PRK08376 377 ETGTRNLNELGGLARTMP 394
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
261-315 |
3.72e-05 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 45.20 E-value: 3.72e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 188502498 261 SLICLRQTDLKALIAYSSVAHMGIVLAGLLTMSYWGLTGSYSLMIAHGLCSSGLF 315
Cdd:PRK05777 285 NLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
220-349 |
1.99e-03 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 39.96 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 220 AGIMLKLGGYGMLRVvsILQMMNLKysfiwISISLVGGVLVSLICLR-------QTDLKALIAYSSVAHMGIVLAGLLTM 292
Cdd:PRK06525 246 AASMVKVGVYIFARA--IQSMGPIP-----HVIGYVGAVMAIVTLLYgflmylpQQDMKRLLAYSTITQLGYMFFGLSLA 318
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 188502498 293 SY---WGLTGSYSLMIAHGLCSSGLFCLANVSYERLGSRSLLINKGLLNFMPVMALWWFL 349
Cdd:PRK06525 319 ILgsrLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCV 378
|
|
| |
