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Conserved domains on  [gi|1883969512|gb|KAF6072877|]
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Riboflavin kinase family protein [Candida albicans]

Protein Classification

riboflavin kinase( domain architecture ID 10483779)

riboflavin kinase catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin-mononucleotide (FMN), and hence, is the rate-limiting enzyme in the synthesis of FAD

CATH:  2.40.30.30
EC:  2.7.1.26
PubMed:  19641494|14580199
SCOP:  4002669

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Flavokinase pfam01687
Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin ...
11-163 1.72e-41

Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.


:

Pssm-ID: 460295 [Multi-domain]  Cd Length: 123  Bit Score: 135.58  E-value: 1.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  11 YPIQQQATIIAGFGRGSsELGIPTANIPINtelNKLEP--GIYYGWCKLipltaqcdeikkrvdgkdvlfnhgneltnEE 88
Cdd:pfam01687   3 RPYSISGKVVHGDGRGR-TLGFPTANLPLP---EKLLPanGVYAVWVRV-----------------------------DG 49
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1883969512  89 RDIFPMVMSIGWNPYYHNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKL 163
Cdd:pfam01687  50 GKVYPGVANIGTNPTFGNGKLTVEVHILD-FDGDLYGKEIRVEFLGFLRPEKKFDSLEALKAQIKKDIEQARAIL 123
 
Name Accession Description Interval E-value
Flavokinase pfam01687
Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin ...
11-163 1.72e-41

Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.


Pssm-ID: 460295 [Multi-domain]  Cd Length: 123  Bit Score: 135.58  E-value: 1.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  11 YPIQQQATIIAGFGRGSsELGIPTANIPINtelNKLEP--GIYYGWCKLipltaqcdeikkrvdgkdvlfnhgneltnEE 88
Cdd:pfam01687   3 RPYSISGKVVHGDGRGR-TLGFPTANLPLP---EKLLPanGVYAVWVRV-----------------------------DG 49
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1883969512  89 RDIFPMVMSIGWNPYYHNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKL 163
Cdd:pfam01687  50 GKVYPGVANIGTNPTFGNGKLTVEVHILD-FDGDLYGKEIRVEFLGFLRPEKKFDSLEALKAQIKKDIEQARAIL 123
Flavokinase smart00904
Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) ...
18-164 3.49e-38

Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase, which converts it into FMN, and FAD synthetase, which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme. the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases. This entry represents riboflavin kinase, which occurs as part of a bifunctional enzyme or a stand-alone enzyme.


Pssm-ID: 214901 [Multi-domain]  Cd Length: 124  Bit Score: 127.17  E-value: 3.49e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512   18 TIIAGFGRGSsELGIPTANIPINTELNKLEPGIYYGWCklipltaqcdeikkRVDGKdvlfnhgneltneerdIFPMVMS 97
Cdd:smart00904  11 RVVHGDKRGR-TLGFPTANLPLDDRLLLPKNGVYAVRV--------------RVDGK----------------IYPGVAN 59
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1883969512   98 IGWNPYYhNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKLK 164
Cdd:smart00904  60 IGTRPTF-GGDRSVEVHILD-FSGDLYGEEIEVEFLKFIRDEQKFDSLDELKAQISRDIEEAREYLA 124
PLN02940 PLN02940
riboflavin kinase
19-163 1.05e-35

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 127.64  E-value: 1.05e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  19 IIAGFGRGSSELGIPTANIP---INTELNKLEPGIYYGWCKLipltaqcdeikkrvdgkdvlfnhgneltnEERDIFPMV 95
Cdd:PLN02940  245 VIKGFGRGSKVLGIPTANLStenYSDVLSEHPSGVYFGWAGL-----------------------------STRGVYKMV 295
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1883969512  96 MSIGWNPYYHNKDKTAEVHIIHKFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKL 163
Cdd:PLN02940  296 MSIGWNPYFNNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSLESLIAKIHEDRRIAEKAL 363
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
18-167 9.98e-25

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 97.42  E-value: 9.98e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  18 TIIAGFGRGSsELGIPTANIPINTElnKLEP--GIYYGWCklipltaqcdeikkRVDGKdvlfnhgneltneerdIFPMV 95
Cdd:COG0196   193 RVVHGDKRGR-TLGFPTANLALPEE--KLLPadGVYAVRV--------------RIDGR----------------RYPGV 239
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883969512  96 MSIGWNPYYHNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKLKSDE 167
Cdd:COG0196   240 ANIGTRPTFDGGEPTLEVHLLD-FDGDLYGKEIEVEFLKRLRDEKKFDSLEALKAQIAKDVEQARAILAKLK 310
 
Name Accession Description Interval E-value
Flavokinase pfam01687
Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin ...
11-163 1.72e-41

Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.


Pssm-ID: 460295 [Multi-domain]  Cd Length: 123  Bit Score: 135.58  E-value: 1.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  11 YPIQQQATIIAGFGRGSsELGIPTANIPINtelNKLEP--GIYYGWCKLipltaqcdeikkrvdgkdvlfnhgneltnEE 88
Cdd:pfam01687   3 RPYSISGKVVHGDGRGR-TLGFPTANLPLP---EKLLPanGVYAVWVRV-----------------------------DG 49
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1883969512  89 RDIFPMVMSIGWNPYYHNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKL 163
Cdd:pfam01687  50 GKVYPGVANIGTNPTFGNGKLTVEVHILD-FDGDLYGKEIRVEFLGFLRPEKKFDSLEALKAQIKKDIEQARAIL 123
Flavokinase smart00904
Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) ...
18-164 3.49e-38

Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase, which converts it into FMN, and FAD synthetase, which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme. the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases. This entry represents riboflavin kinase, which occurs as part of a bifunctional enzyme or a stand-alone enzyme.


Pssm-ID: 214901 [Multi-domain]  Cd Length: 124  Bit Score: 127.17  E-value: 3.49e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512   18 TIIAGFGRGSsELGIPTANIPINTELNKLEPGIYYGWCklipltaqcdeikkRVDGKdvlfnhgneltneerdIFPMVMS 97
Cdd:smart00904  11 RVVHGDKRGR-TLGFPTANLPLDDRLLLPKNGVYAVRV--------------RVDGK----------------IYPGVAN 59
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1883969512   98 IGWNPYYhNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKLK 164
Cdd:smart00904  60 IGTRPTF-GGDRSVEVHILD-FSGDLYGEEIEVEFLKFIRDEQKFDSLDELKAQISRDIEEAREYLA 124
PLN02940 PLN02940
riboflavin kinase
19-163 1.05e-35

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 127.64  E-value: 1.05e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  19 IIAGFGRGSSELGIPTANIP---INTELNKLEPGIYYGWCKLipltaqcdeikkrvdgkdvlfnhgneltnEERDIFPMV 95
Cdd:PLN02940  245 VIKGFGRGSKVLGIPTANLStenYSDVLSEHPSGVYFGWAGL-----------------------------STRGVYKMV 295
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1883969512  96 MSIGWNPYYHNKDKTAEVHIIHKFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKL 163
Cdd:PLN02940  296 MSIGWNPYFNNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSLESLIAKIHEDRRIAEKAL 363
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
18-167 9.98e-25

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 97.42  E-value: 9.98e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  18 TIIAGFGRGSsELGIPTANIPINTElnKLEP--GIYYGWCklipltaqcdeikkRVDGKdvlfnhgneltneerdIFPMV 95
Cdd:COG0196   193 RVVHGDKRGR-TLGFPTANLALPEE--KLLPadGVYAVRV--------------RIDGR----------------RYPGV 239
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883969512  96 MSIGWNPYYHNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKLKSDE 167
Cdd:COG0196   240 ANIGTRPTFDGGEPTLEVHLLD-FDGDLYGKEIEVEFLKRLRDEKKFDSLEALKAQIAKDVEQARAILAKLK 310
PRK05627 PRK05627
bifunctional riboflavin kinase/FAD synthetase;
16-165 5.65e-21

bifunctional riboflavin kinase/FAD synthetase;


Pssm-ID: 235536 [Multi-domain]  Cd Length: 305  Bit Score: 87.13  E-value: 5.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  16 QATIIAGFGRGSsELGIPTANIPINTELNKLEpGIYYGWCklipltaqcdeikkRVDGKdvlfnhgneltneerdIFPMV 95
Cdd:PRK05627  189 SGRVVHGQKLGR-TLGFPTANLPLPDRVLPAD-GVYAVRV--------------KVDGK----------------PYPGV 236
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883969512  96 MSIGWNPYYHNKDKTAEVHIIHkFQKNFYGSKIEYVVLGYIRPELNFDSIDELIDTINSDIEFAKSKLKS 165
Cdd:PRK05627  237 ANIGTRPTVDGGRQLLEVHLLD-FNGDLYGEHITVEFLKKLRDEQKFDSLDELKAQIAKDIETARAFLAL 305
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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