|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
2-1751 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 3085.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 2 MSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYD 81
Cdd:PRK13709 1 MSIAQVKSAGSAGNYYTDKDNYYVLGSMGERWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 82 LTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAV 161
Cdd:PRK13709 81 LTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQDPQLHTHAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 162 VANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQAI 241
Cdd:PRK13709 161 VANVTQHNGKWKTLSSDKVGKTGFIENVYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVPVEAFSSRSQEI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 242 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRDAADQRAETRTQAPGAVSQEGPDVQQAVT 321
Cdd:PRK13709 241 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQAPGPASQDGPDIQQAVT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 322 QAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 401
Cdd:PRK13709 321 QAIAGLSDRKVQFTYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 402 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMVREQGREVQIIAADRRSQMNLKQDER 481
Cdd:PRK13709 401 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDER 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 482 LSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQ 561
Cdd:PRK13709 481 LSGELITGRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTGTGSALMVLKDAGVNTYRWQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 562 GGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDS 641
Cdd:PRK13709 561 GGEQRPATVISEPDKNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 642 RSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADGERLRVT 721
Cdd:PRK13709 641 KSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVKISSLDSSWSLFRPEKMPVADGERLRVL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 722 GKISGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENGWVETPGHSVSDSAKVFASVTQMAMDNAT 801
Cdd:PRK13709 721 GKIPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHSVSDSATVFASVTQRAMDNAT 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 802 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETSLETAISHQKSVLHTPAQQAIHLALPVVESKNLA 881
Cdd:PRK13709 801 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETDLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 882 FSQVDLLTEAKSFAAEGTSFTELGGEIDAQIKRGDLLHVDVAKGYGTDLLVSRASYEAEKSILRHILEGKEAVTPLMERV 961
Cdd:PRK13709 881 FSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 962 PGELMEMLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1041
Cdd:PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1042 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13709 1041 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRSAA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1122 DVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRQEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLkgeAF 1201
Cdd:PRK13709 1121 DVAIMKEIVRQTPELREAVYSLINRDVERALSGIESVKPSQVPRQEGAWAPESSVTEFSHPQEAKLAEAQQKAML---AF 1197
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1202 PDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWE 1281
Cdd:PRK13709 1198 PDVPMTLYEAIVRDYTGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWE 1277
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1282 THRDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1361
Cdd:PRK13709 1278 AHRGALALVDNVYHRIAGIDKDDGLITLRDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1357
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1362 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQ 1441
Cdd:PRK13709 1358 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMKQ 1437
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1442 HVQVYTDNRQGWTDTINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRK 1521
Cdd:PRK13709 1438 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDTAAGRAVLRQAGLAGGDSPARFIAPGRK 1517
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1522 YPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1601
Cdd:PRK13709 1518 YPQPHVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1597
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1602 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1681
Cdd:PRK13709 1598 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
|
1690 1700 1710 1720 1730 1740 1750
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1682 GRTEQAVREIAGQERERAVTSEREAALPESVLREPQREREAVREVVRENLLQERLQQMERDMVRDLQKEK 1751
Cdd:PRK13709 1678 GKTEQAVRDIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMERDMVRDLQKEK 1747
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-1756 |
0e+00 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 1982.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1 MMSIAQVRSAGSAGNYYTDKDNYYVLGSM---GERWAGRGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQDGSNRH 76
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDEDNYYLKDSKslnNTRWLGKGAEQLGLLGkPVEKEQFEALLSGTLPDGTQLGRIDKGGIHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 77 RPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQ 155
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSEMEKdAAQARQTVDGKTEFINTRNLVFAMFRHKTSRENDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 156 LHTHAVVANVTQ-HNGEWKTLSSDKVGKTGFI----ENVYANQIAFGRLYREKLKEQVEALGYETEVVGKhGMWEMPGVP 230
Cdd:TIGR02760 161 LHTHAVVQNMTHdSDGKWRSLASDMKGQKGVIegfrERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQGVP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 231 ---VEAFSGRSQAIREAVGEDA--SLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRDAADQRAETRTQA 305
Cdd:TIGR02760 240 eqvLTAFSKRRQQIDELVDEKGwsSAKARDIAALDTRKDKTYIDDETLMEKWQQECKDMGFDPHALVASSYKPENIVARF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 306 PGAVSQegpDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIER--ARAGIDEAISREQLIPLDREKGLFTSG 383
Cdd:TIGR02760 320 YGPSQI---DAQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAGNKIIDEidIKKAIDELIANGQLIPLFTQKGLFTTQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 384 IHVLDELSVRALSRDIMKQNRVTVHPEKSV--PRTAGYSDAVSVLAQDRPSLAIVSGQGGAaGQRERVAELVMMVREQGR 461
Cdd:TIGR02760 397 TMLTNEKELIARTEGGKGALRVIVSKQKLSefALSPSNKDAVSTLFTSTKRFIIINGFGGT-GSTEIAQLLLHLASEQGY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 462 EVQIIAADRRSQMNLKQD-ERLSGELITGRRQLLEGM-------------AFTPGSTVIVDQGEKLSLKETLTLLDGAAR 527
Cdd:TIGR02760 476 EIQIITAGSLSAQELRQKiPRLASTFITWVKNLFNDDqdhtvqglldkssPFSNKDIFVVDEANKLSNNELLKLIDKAEQ 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 528 HNVQ-VLITDSGQRTG--TGSALMAMKDAGVNTYRWQGGEQRPATI-ISEPDRNVRYARLAGDFAASVKAGEESVAQVSG 603
Cdd:TIGR02760 556 HNSKlILLNDSAQRQGmsAGSAIDLLKEGGVTTYAWVDTKQQKASVeISEAVDKLRVDYIASAWLDLTPDRQNSQVLATT 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 604 VREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTL 683
Cdd:TIGR02760 636 HREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 684 RDAQGETQVVRISSL---DSSWSLFRPEKMPVADGERLRVTGKISGLRVSGGDRLQVASVSEDAMTVV-VPGRaepaSLP 759
Cdd:TIGR02760 716 KDAQGKTQKFKPSSLkdlERPFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGITLItEDGQ----TLH 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 760 VSDSPFTALKLENGWVETPGHSVSDSAKVFASVTQMAMDNATLNGLARSGRDVRLYSSLDET--RTAEKLARHPSFTVVS 837
Cdd:TIGR02760 792 LPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGVKQYALSKALLNSLNRSASRVDLFTDLDEKaqRYLEKTRGIPSAIVVV 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 838 EQIKARAGE-------TSLETAISHQKSVLHTPAQQ-----AIHLALPVVESKNLAFSQVDLLTEAKSFAAEGTSFTELG 905
Cdd:TIGR02760 872 DQKQHLPDAvttnntdKSLEMDISDTLHALEAKAKDgknsiALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKA 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 906 GEIDAQIKRGDLLHVDVAKGYGT-DLLVSRASYEAEKSILRHILEGKEAVTPLMERVPG----ELMEMLTSGQRAATRMI 980
Cdd:TIGR02760 952 AEIAAALKNRPKLYRLLSAEYGDgTRWTTRAALRTETSILLHILPGKETVTPLATRAQVflnlELLERLTHGQKQAIHLI 1031
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 981 LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGEtp 1060
Cdd:TIGR02760 1032 ISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGG-- 1109
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQ--TPELRE 1138
Cdd:TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFDIIDTAIMKEIVRQnnSAELKA 1189
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1139 AVYSLINRDVERALSGLESVKPSQVPRQEGAWAPEHSVTEFSHsQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTG 1218
Cdd:TIGR02760 1190 AHNSLDKRSNPKALELLKNQNPLQHELMQNAAMPEIASDEQGL-QKHDLAKLAVNTEKPKKAQPDATVTLYREIVKDYLS 1268
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1219 RTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEThRDALALVDNVYHRIA 1298
Cdd:TIGR02760 1269 RTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEK-GAVLRLKKDAYLTIA 1347
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1299 GISKDDGLITLQDAE-GNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAV-SGDSVTLSD 1376
Cdd:TIGR02760 1348 DIDREHGKLTVADIKtGSERDILPRQLDHTFTSLYSDSELPLAKGDKIRLRATDKNRGIKANEVYTVTQVvNGLSVQLSK 1427
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1377 GQQTRVIRPGQERaEQHIDLAYAITAHGAQGASETFAIALegtEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWT-- 1454
Cdd:TIGR02760 1428 VKNSLSLKPIQAK-DKHWDYAYTRTADSAQGATYTFVIAL---IKGRLALTNYRSAYIDLTRASHHVELYTDNKEGTVks 1503
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1455 ---------------------------------------------------DTINNAV---------------------- 1461
Cdd:TIGR02760 1504 wkqreanktsaveteedyrpkqstqfnnraqpheepkyqqkngplkiqsaaEIINEALpayteslaktllgepntqksrr 1583
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1462 -----------------------------QKGTAHDVFEPKPD---REVMN----------------------------- 1480
Cdd:TIGR02760 1584 drytfgakgglkvsltgkyrglwhdfstgEKGTLIQLIEAKKGlsfKEALNqaasllgipqhyqlsinikapqlsntepq 1663
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1481 --------AERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAP-----GRKYPQPYVALPAFDRNGKSAGIWLNPLT 1547
Cdd:TIGR02760 1664 klnqlekrAKSLFQGSQELKGTLAEKYLKQHRGLASIDNDDIRFHPtvyssDKKNKHPALIAAARNEKGEITGIQITYLD 1743
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1548 TDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGE-SLLADNMQDGVRIARDNPDSGVVVRIAGegrpwnpgaitggrvwg 1626
Cdd:TIGR02760 1744 KDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDrSYIAEGIETGLSIALANPKATVVIAVGG----------------- 1806
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1627 dipDNSVQPGAGNGEPVTAEVLAQRQAEEAIrreTERRADEIVRKMAENK-----------PDLPDGRTEQAVREIAGQE 1695
Cdd:TIGR02760 1807 ---KNNLSPIIPKFIPKNVVIVLDNDGEEAK---SQRAIEKIINKFKQDNisarivfpddwNDIGEEELQKQLMRAISSI 1880
|
1930 1940 1950 1960 1970 1980
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1883232606 1696 RERAVTSEREAALPESVLREPQREREAVREVVRENLLQERLQQM-------ERDMVRDLQKEKTLGGD 1756
Cdd:TIGR02760 1881 EDKDIEIPKAIADFESVLKMPNSDIISIIDNARTEREKSDLEQIvanehksQQALERDLNKEFTPDKR 1948
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-281 |
6.19e-112 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 357.00 E-value: 6.19e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1 MMSIAQVRSAGSAGNYYTDKD--NYYVLG--SMGERWAGRGAEQLGL-QGSVDKDVFTRLLEGRLPDGADLSRMQDGSNR 75
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEKDldNYYSEDggTPAGRWFGKGAEALGLsGGAVDGERFKALLDGRLPDGERLRRRRKGAGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 76 HRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVR-QVEALASTRVMTDGQSETVL--TGNLVMALFNHDTSRDQ 152
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALEyLEERLAQTRVTVDGKGRTSLekTGNLVAALFRHDTSRAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 153 EPQLHTHAVVANVTQH-NGEWKTLSSdkvgktgfiENVYANQIAFGRLYREKLKEQVEALGYETEVVgKHGMWEMPGVP- 230
Cdd:NF041492 161 DPQLHTHAVVMNMTQRpDGKWRSLDN---------EELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPr 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1883232606 231 --VEAFSGRSQAIREAVGED----ASLKSRDVAALDTRKSKQ-HVDPEVRMAEWMQTL 281
Cdd:NF041492 231 eqIEAFSKRSQQIEEWLGENpatlASAALRQIAALDTRKAKEaDVDPEELEAEWREEA 288
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-283 |
6.52e-97 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 313.78 E-value: 6.52e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 10 AGSAGNYYTDKDNYYVL-GSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPD-GADLSRMQDGSNRHRPGYDLTFSAP 87
Cdd:pfam08751 1 AGDAYAYYTRQDDYYTEgGEPPGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRRRPRGRKHRAGFDLTFSAP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 88 KSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVT 166
Cdd:pfam08751 81 KSVSLLAAVGGDERIEAAHRAAVAEALAWLEKhAAQTRVGKDGGVEQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVANVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 167 Q-HNGEWKTLSSDKvgktgfienVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQAIR 242
Cdd:pfam08751 161 QrEDGKWRALDSRG---------LYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPeelIEAFSKRRAQIE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1883232606 243 EAVGE------DASLKSRDVAALDTRKSK-QHVDPEVRMAEWMQTLKE 283
Cdd:pfam08751 232 AELAElgathgRAPPAARQIAALETRPAKhEPRSLAELRARWREEAAE 279
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
937-1468 |
1.80e-49 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 184.79 E-value: 1.80e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 937 YEAEKSILRHILEGK------EAVTPLMERVPGELMEMLTSGQRAATRMILETSdRFTVVQGYAGVGKTTqfraVMSAVN 1010
Cdd:COG0507 87 LEAEQRLARRLRRLArpaldeADVEAALAALEPRAGITLSDEQREAVALALTTR-RVSVLTGGAGTGKTT----TLRALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1011 MLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLH---DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYAL 1086
Cdd:COG0507 162 AALEALGLRVALAAPTGKAAKRLSeSTGIEARTIHRLLGlrpDSGRFRHNRDNPLTPADLLVVDEASMVDTRLMAALLEA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1087 IAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYS-LINR-DVERALSglesvkpsqvp 1164
Cdd:COG0507 242 LPRAGARLILVGDPDQLPSVGAGAVLRDLIESGTVPVVELTEVYRQADDSRIIELAhAIREgDAPEALN----------- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1165 rqegAWAPEHSVTEFSHSQEAKlaeaqqkamlkgeafpdvpmtlyEAIVRDYTGRtPEAREQTLIVTHLNEDRRVLNSMI 1244
Cdd:COG0507 311 ----ARYADVVFVEAEDAEEAA-----------------------EAIVELYADR-PAGGEDIQVLAPTNAGVDALNQAI 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1245 HDAREKAGELGKEQvmvpvlntanIRDGELRrlstwethrdalalvdnvyhriagiskddglitlqdaegntrlisprea 1324
Cdd:COG0507 363 REALNPAGELEREL----------AEDGELE------------------------------------------------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1325 vaegvtlytpdtIRVgtGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLS---DGQQTRVIRPGQERaeqHIDLAYAIT 1401
Cdd:COG0507 384 ------------LYV--GDRVMFTRNDYDLGVFNGDIGTVLSIDEDEGRLTvrfDGREIVTYDPSELD---QLELAYAIT 446
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1883232606 1402 AHGAQGAseTF--AIALEGTEGNRklMAGFESAYVALSRMKQHVQVYTDNRQgWTDTINNAVQKGTAHD 1468
Cdd:COG0507 447 VHKSQGS--TFdrVILVLPSEHSP--LLSRELLYTALTRARELLTLVGDRDA-LARAVRRDTARATGLA 510
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
972-1130 |
1.69e-39 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 144.23 E-value: 1.69e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 972 GQRAATRMILetSDRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLHDT 1050
Cdd:cd17933 1 EQKAAVRLVL--RNRVSVLTGGAGTGKTTTLKALLAAL----EAEGKRVVLAAPTGKAAKRLSeSTGIEASTIHRLLGIN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1051 QLQQRS--GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGgRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKE 1128
Cdd:cd17933 75 PGGGGFyyNEENPLDADLLIVDEASMVDTRLMAALLSAIPAGA-RLILVGDPDQLPSVGAGNVLRDLIASKGVPTVELTE 153
|
..
gi 1883232606 1129 IV 1130
Cdd:cd17933 154 VF 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
2-1751 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 3085.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 2 MSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYD 81
Cdd:PRK13709 1 MSIAQVKSAGSAGNYYTDKDNYYVLGSMGERWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 82 LTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAV 161
Cdd:PRK13709 81 LTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQDPQLHTHAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 162 VANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQAI 241
Cdd:PRK13709 161 VANVTQHNGKWKTLSSDKVGKTGFIENVYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVPVEAFSSRSQEI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 242 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRDAADQRAETRTQAPGAVSQEGPDVQQAVT 321
Cdd:PRK13709 241 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQAPGPASQDGPDIQQAVT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 322 QAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 401
Cdd:PRK13709 321 QAIAGLSDRKVQFTYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 402 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMVREQGREVQIIAADRRSQMNLKQDER 481
Cdd:PRK13709 401 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDER 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 482 LSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQ 561
Cdd:PRK13709 481 LSGELITGRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTGTGSALMVLKDAGVNTYRWQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 562 GGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDS 641
Cdd:PRK13709 561 GGEQRPATVISEPDKNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 642 RSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADGERLRVT 721
Cdd:PRK13709 641 KSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVKISSLDSSWSLFRPEKMPVADGERLRVL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 722 GKISGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENGWVETPGHSVSDSAKVFASVTQMAMDNAT 801
Cdd:PRK13709 721 GKIPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHSVSDSATVFASVTQRAMDNAT 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 802 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETSLETAISHQKSVLHTPAQQAIHLALPVVESKNLA 881
Cdd:PRK13709 801 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETDLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 882 FSQVDLLTEAKSFAAEGTSFTELGGEIDAQIKRGDLLHVDVAKGYGTDLLVSRASYEAEKSILRHILEGKEAVTPLMERV 961
Cdd:PRK13709 881 FSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 962 PGELMEMLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1041
Cdd:PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1042 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13709 1041 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRSAA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1122 DVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRQEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLkgeAF 1201
Cdd:PRK13709 1121 DVAIMKEIVRQTPELREAVYSLINRDVERALSGIESVKPSQVPRQEGAWAPESSVTEFSHPQEAKLAEAQQKAML---AF 1197
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1202 PDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWE 1281
Cdd:PRK13709 1198 PDVPMTLYEAIVRDYTGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWE 1277
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1282 THRDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1361
Cdd:PRK13709 1278 AHRGALALVDNVYHRIAGIDKDDGLITLRDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1357
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1362 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQ 1441
Cdd:PRK13709 1358 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMKQ 1437
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1442 HVQVYTDNRQGWTDTINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRK 1521
Cdd:PRK13709 1438 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDTAAGRAVLRQAGLAGGDSPARFIAPGRK 1517
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1522 YPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1601
Cdd:PRK13709 1518 YPQPHVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1597
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1602 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1681
Cdd:PRK13709 1598 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
|
1690 1700 1710 1720 1730 1740 1750
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1682 GRTEQAVREIAGQERERAVTSEREAALPESVLREPQREREAVREVVRENLLQERLQQMERDMVRDLQKEK 1751
Cdd:PRK13709 1678 GKTEQAVRDIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMERDMVRDLQKEK 1747
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
134-1756 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 2979.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 134 VLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGY 213
Cdd:PRK14712 1 VLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 214 ETEVVGKHGMWEMPGVPVEAFSGRSQAIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD 293
Cdd:PRK14712 81 ETEVVGKHGMWEMPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 294 AADQRAETRTQAPGAVSQEGPDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPL 373
Cdd:PRK14712 161 AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 374 DREKGLFTSGIHVLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV 453
Cdd:PRK14712 241 DREKGLFTSGIHMLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 454 MMVREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 533
Cdd:PRK14712 321 MMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 534 ITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQA 613
Cdd:PRK14712 401 ITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 614 IRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVV 693
Cdd:PRK14712 481 IRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQVV 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 694 RISSLDSSWSLFRPEKMPVADGERLRVTGKISGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENG 773
Cdd:PRK14712 561 RISSLDSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPATLPVSDSPFTALKLENG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 774 WVETPGHSVSDSAKVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETSLETAI 853
Cdd:PRK14712 641 WVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAI 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 854 SHQKSVLHTPAQQAIHLALPVVESKNLAFSQVDLLTEAKSFAAEGTSFTELGGEIDAQIKRGDLLHVDVAKGYGTDLLVS 933
Cdd:PRK14712 721 SLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAKGYGTGLLVS 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 934 RASYEAEKSILRHILEGKEAVTPLMERVPGELMEMLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP 1013
Cdd:PRK14712 801 RASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1014 ESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGR 1093
Cdd:PRK14712 881 ESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGR 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1094 AVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRQEGAWAPE 1173
Cdd:PRK14712 961 AVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLERVKPSQVPRLEGAWAPE 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1174 HSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGE 1253
Cdd:PRK14712 1041 HSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGE 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1254 LGKEQVMVPVLNTANIRDGELRRLSTWETHRDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYT 1333
Cdd:PRK14712 1121 LGQVQVMVPVLNTANIRDGELRRLSTWENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYT 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1334 PDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFA 1413
Cdd:PRK14712 1201 PDTIRVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFA 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1414 IALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDTINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRD 1493
Cdd:PRK14712 1281 IALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRD 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1494 VAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVA 1573
Cdd:PRK14712 1361 VAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVA 1440
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1574 LQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQA 1653
Cdd:PRK14712 1441 LQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQA 1520
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1654 EEAIRRETERRADEIVRKMAENKPDLPDGRTEQAVREIAGQERERAVTSEREAALPESVLREPQREREAVREVVRENLLQ 1733
Cdd:PRK14712 1521 EEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVREIAGQERDRAAITEREAALPESVLREPQRVREAVREVARENLLQ 1600
|
1610 1620
....*....|....*....|...
gi 1883232606 1734 ERLQQMERDMVRDLQKEKTLGGD 1756
Cdd:PRK14712 1601 ERLQQMERDMVRDLQKEKTPGGD 1623
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-1756 |
0e+00 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 1982.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1 MMSIAQVRSAGSAGNYYTDKDNYYVLGSM---GERWAGRGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQDGSNRH 76
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDEDNYYLKDSKslnNTRWLGKGAEQLGLLGkPVEKEQFEALLSGTLPDGTQLGRIDKGGIHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 77 RPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQ 155
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSEMEKdAAQARQTVDGKTEFINTRNLVFAMFRHKTSRENDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 156 LHTHAVVANVTQ-HNGEWKTLSSDKVGKTGFI----ENVYANQIAFGRLYREKLKEQVEALGYETEVVGKhGMWEMPGVP 230
Cdd:TIGR02760 161 LHTHAVVQNMTHdSDGKWRSLASDMKGQKGVIegfrERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQGVP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 231 ---VEAFSGRSQAIREAVGEDA--SLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRDAADQRAETRTQA 305
Cdd:TIGR02760 240 eqvLTAFSKRRQQIDELVDEKGwsSAKARDIAALDTRKDKTYIDDETLMEKWQQECKDMGFDPHALVASSYKPENIVARF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 306 PGAVSQegpDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIER--ARAGIDEAISREQLIPLDREKGLFTSG 383
Cdd:TIGR02760 320 YGPSQI---DAQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAGNKIIDEidIKKAIDELIANGQLIPLFTQKGLFTTQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 384 IHVLDELSVRALSRDIMKQNRVTVHPEKSV--PRTAGYSDAVSVLAQDRPSLAIVSGQGGAaGQRERVAELVMMVREQGR 461
Cdd:TIGR02760 397 TMLTNEKELIARTEGGKGALRVIVSKQKLSefALSPSNKDAVSTLFTSTKRFIIINGFGGT-GSTEIAQLLLHLASEQGY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 462 EVQIIAADRRSQMNLKQD-ERLSGELITGRRQLLEGM-------------AFTPGSTVIVDQGEKLSLKETLTLLDGAAR 527
Cdd:TIGR02760 476 EIQIITAGSLSAQELRQKiPRLASTFITWVKNLFNDDqdhtvqglldkssPFSNKDIFVVDEANKLSNNELLKLIDKAEQ 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 528 HNVQ-VLITDSGQRTG--TGSALMAMKDAGVNTYRWQGGEQRPATI-ISEPDRNVRYARLAGDFAASVKAGEESVAQVSG 603
Cdd:TIGR02760 556 HNSKlILLNDSAQRQGmsAGSAIDLLKEGGVTTYAWVDTKQQKASVeISEAVDKLRVDYIASAWLDLTPDRQNSQVLATT 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 604 VREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTL 683
Cdd:TIGR02760 636 HREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 684 RDAQGETQVVRISSL---DSSWSLFRPEKMPVADGERLRVTGKISGLRVSGGDRLQVASVSEDAMTVV-VPGRaepaSLP 759
Cdd:TIGR02760 716 KDAQGKTQKFKPSSLkdlERPFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGITLItEDGQ----TLH 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 760 VSDSPFTALKLENGWVETPGHSVSDSAKVFASVTQMAMDNATLNGLARSGRDVRLYSSLDET--RTAEKLARHPSFTVVS 837
Cdd:TIGR02760 792 LPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGVKQYALSKALLNSLNRSASRVDLFTDLDEKaqRYLEKTRGIPSAIVVV 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 838 EQIKARAGE-------TSLETAISHQKSVLHTPAQQ-----AIHLALPVVESKNLAFSQVDLLTEAKSFAAEGTSFTELG 905
Cdd:TIGR02760 872 DQKQHLPDAvttnntdKSLEMDISDTLHALEAKAKDgknsiALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKA 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 906 GEIDAQIKRGDLLHVDVAKGYGT-DLLVSRASYEAEKSILRHILEGKEAVTPLMERVPG----ELMEMLTSGQRAATRMI 980
Cdd:TIGR02760 952 AEIAAALKNRPKLYRLLSAEYGDgTRWTTRAALRTETSILLHILPGKETVTPLATRAQVflnlELLERLTHGQKQAIHLI 1031
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 981 LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGEtp 1060
Cdd:TIGR02760 1032 ISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGG-- 1109
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQ--TPELRE 1138
Cdd:TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFDIIDTAIMKEIVRQnnSAELKA 1189
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1139 AVYSLINRDVERALSGLESVKPSQVPRQEGAWAPEHSVTEFSHsQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTG 1218
Cdd:TIGR02760 1190 AHNSLDKRSNPKALELLKNQNPLQHELMQNAAMPEIASDEQGL-QKHDLAKLAVNTEKPKKAQPDATVTLYREIVKDYLS 1268
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1219 RTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEThRDALALVDNVYHRIA 1298
Cdd:TIGR02760 1269 RTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEK-GAVLRLKKDAYLTIA 1347
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1299 GISKDDGLITLQDAE-GNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAV-SGDSVTLSD 1376
Cdd:TIGR02760 1348 DIDREHGKLTVADIKtGSERDILPRQLDHTFTSLYSDSELPLAKGDKIRLRATDKNRGIKANEVYTVTQVvNGLSVQLSK 1427
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1377 GQQTRVIRPGQERaEQHIDLAYAITAHGAQGASETFAIALegtEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWT-- 1454
Cdd:TIGR02760 1428 VKNSLSLKPIQAK-DKHWDYAYTRTADSAQGATYTFVIAL---IKGRLALTNYRSAYIDLTRASHHVELYTDNKEGTVks 1503
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1455 ---------------------------------------------------DTINNAV---------------------- 1461
Cdd:TIGR02760 1504 wkqreanktsaveteedyrpkqstqfnnraqpheepkyqqkngplkiqsaaEIINEALpayteslaktllgepntqksrr 1583
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1462 -----------------------------QKGTAHDVFEPKPD---REVMN----------------------------- 1480
Cdd:TIGR02760 1584 drytfgakgglkvsltgkyrglwhdfstgEKGTLIQLIEAKKGlsfKEALNqaasllgipqhyqlsinikapqlsntepq 1663
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1481 --------AERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAP-----GRKYPQPYVALPAFDRNGKSAGIWLNPLT 1547
Cdd:TIGR02760 1664 klnqlekrAKSLFQGSQELKGTLAEKYLKQHRGLASIDNDDIRFHPtvyssDKKNKHPALIAAARNEKGEITGIQITYLD 1743
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1548 TDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGE-SLLADNMQDGVRIARDNPDSGVVVRIAGegrpwnpgaitggrvwg 1626
Cdd:TIGR02760 1744 KDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDrSYIAEGIETGLSIALANPKATVVIAVGG----------------- 1806
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1627 dipDNSVQPGAGNGEPVTAEVLAQRQAEEAIrreTERRADEIVRKMAENK-----------PDLPDGRTEQAVREIAGQE 1695
Cdd:TIGR02760 1807 ---KNNLSPIIPKFIPKNVVIVLDNDGEEAK---SQRAIEKIINKFKQDNisarivfpddwNDIGEEELQKQLMRAISSI 1880
|
1930 1940 1950 1960 1970 1980
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1883232606 1696 RERAVTSEREAALPESVLREPQREREAVREVVRENLLQERLQQM-------ERDMVRDLQKEKTLGGD 1756
Cdd:TIGR02760 1881 EDKDIEIPKAIADFESVLKMPNSDIISIIDNARTEREKSDLEQIvanehksQQALERDLNKEFTPDKR 1948
|
|
| relax_trwC |
TIGR02686 |
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) ... |
13-288 |
9.18e-139 |
|
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 274258 [Multi-domain] Cd Length: 283 Bit Score: 431.11 E-value: 9.18e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 13 AGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSVSM 92
Cdd:TIGR02686 1 AADYYTDGDNYYLKDSDAGRWLGKGAQELGLSGEVEKKQFEALLEGRLPDGTRLGRIEDRQSKHRPGFDLTFSAPKSVSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 93 MAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQH-NG 170
Cdd:TIGR02686 81 LALVGGDPRLIDAHDEAVKFTLEQLEKeAAAARVTQDGEIEFEKTGNLVIALFRHDTSRANDPQLHTHAVVANMTRRsDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 171 EWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQAIREAVGE 247
Cdd:TIGR02686 161 KWRSLSSDKKGKHGFIEEIYKNQIYLGLLYRAKLANELKELGYQTRVYGKHGNFEIDGVPeevIEAFSKRRQQIEEWVAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1883232606 248 D--ASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDI 288
Cdd:TIGR02686 241 RgwSLAKSRDTAALDTRKKKTVHDREALREEWQQTAKELGFDP 283
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-281 |
6.19e-112 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 357.00 E-value: 6.19e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1 MMSIAQVRSAGSAGNYYTDKD--NYYVLG--SMGERWAGRGAEQLGL-QGSVDKDVFTRLLEGRLPDGADLSRMQDGSNR 75
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEKDldNYYSEDggTPAGRWFGKGAEALGLsGGAVDGERFKALLDGRLPDGERLRRRRKGAGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 76 HRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVR-QVEALASTRVMTDGQSETVL--TGNLVMALFNHDTSRDQ 152
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALEyLEERLAQTRVTVDGKGRTSLekTGNLVAALFRHDTSRAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 153 EPQLHTHAVVANVTQH-NGEWKTLSSdkvgktgfiENVYANQIAFGRLYREKLKEQVEALGYETEVVgKHGMWEMPGVP- 230
Cdd:NF041492 161 DPQLHTHAVVMNMTQRpDGKWRSLDN---------EELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPr 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1883232606 231 --VEAFSGRSQAIREAVGED----ASLKSRDVAALDTRKSKQ-HVDPEVRMAEWMQTL 281
Cdd:NF041492 231 eqIEAFSKRSQQIEEWLGENpatlASAALRQIAALDTRKAKEaDVDPEELEAEWREEA 288
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-283 |
6.52e-97 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 313.78 E-value: 6.52e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 10 AGSAGNYYTDKDNYYVL-GSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPD-GADLSRMQDGSNRHRPGYDLTFSAP 87
Cdd:pfam08751 1 AGDAYAYYTRQDDYYTEgGEPPGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRRRPRGRKHRAGFDLTFSAP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 88 KSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVT 166
Cdd:pfam08751 81 KSVSLLAAVGGDERIEAAHRAAVAEALAWLEKhAAQTRVGKDGGVEQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVANVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 167 Q-HNGEWKTLSSDKvgktgfienVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQAIR 242
Cdd:pfam08751 161 QrEDGKWRALDSRG---------LYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPeelIEAFSKRRAQIE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1883232606 243 EAVGE------DASLKSRDVAALDTRKSK-QHVDPEVRMAEWMQTLKE 283
Cdd:pfam08751 232 AELAElgathgRAPPAARQIAALETRPAKhEPRSLAELRARWREEAAE 279
|
|
| TraI |
pfam07057 |
DNA helicase TraI; This family represents a conserved region approximately 130 residues long ... |
1434-1557 |
5.91e-83 |
|
DNA helicase TraI; This family represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI (EC:3.6.1.-). TraI is a bifunctional protein that catalyzes the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer.
Pssm-ID: 429268 [Multi-domain] Cd Length: 124 Bit Score: 267.25 E-value: 5.91e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1434 VALSRMKQHVQVYTDNRQGWTDTINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPA 1513
Cdd:pfam07057 1 VALSRMKQHVQVYTDNRQGWIKAINNAPQKGTAHDVLEPKNDREVMNADRLFSTARELRDVAAGRAVLRQAGLAQGDSPA 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1883232606 1514 RFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGF 1557
Cdd:pfam07057 81 RFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGRGLRGF 124
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
937-1468 |
1.80e-49 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 184.79 E-value: 1.80e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 937 YEAEKSILRHILEGK------EAVTPLMERVPGELMEMLTSGQRAATRMILETSdRFTVVQGYAGVGKTTqfraVMSAVN 1010
Cdd:COG0507 87 LEAEQRLARRLRRLArpaldeADVEAALAALEPRAGITLSDEQREAVALALTTR-RVSVLTGGAGTGKTT----TLRALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1011 MLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLH---DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYAL 1086
Cdd:COG0507 162 AALEALGLRVALAAPTGKAAKRLSeSTGIEARTIHRLLGlrpDSGRFRHNRDNPLTPADLLVVDEASMVDTRLMAALLEA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1087 IAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYS-LINR-DVERALSglesvkpsqvp 1164
Cdd:COG0507 242 LPRAGARLILVGDPDQLPSVGAGAVLRDLIESGTVPVVELTEVYRQADDSRIIELAhAIREgDAPEALN----------- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1165 rqegAWAPEHSVTEFSHSQEAKlaeaqqkamlkgeafpdvpmtlyEAIVRDYTGRtPEAREQTLIVTHLNEDRRVLNSMI 1244
Cdd:COG0507 311 ----ARYADVVFVEAEDAEEAA-----------------------EAIVELYADR-PAGGEDIQVLAPTNAGVDALNQAI 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1245 HDAREKAGELGKEQvmvpvlntanIRDGELRrlstwethrdalalvdnvyhriagiskddglitlqdaegntrlisprea 1324
Cdd:COG0507 363 REALNPAGELEREL----------AEDGELE------------------------------------------------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1325 vaegvtlytpdtIRVgtGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLS---DGQQTRVIRPGQERaeqHIDLAYAIT 1401
Cdd:COG0507 384 ------------LYV--GDRVMFTRNDYDLGVFNGDIGTVLSIDEDEGRLTvrfDGREIVTYDPSELD---QLELAYAIT 446
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1883232606 1402 AHGAQGAseTF--AIALEGTEGNRklMAGFESAYVALSRMKQHVQVYTDNRQgWTDTINNAVQKGTAHD 1468
Cdd:COG0507 447 VHKSQGS--TFdrVILVLPSEHSP--LLSRELLYTALTRARELLTLVGDRDA-LARAVRRDTARATGLA 510
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
972-1130 |
1.69e-39 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 144.23 E-value: 1.69e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 972 GQRAATRMILetSDRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLHDT 1050
Cdd:cd17933 1 EQKAAVRLVL--RNRVSVLTGGAGTGKTTTLKALLAAL----EAEGKRVVLAAPTGKAAKRLSeSTGIEASTIHRLLGIN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1051 QLQQRS--GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGgRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKE 1128
Cdd:cd17933 75 PGGGGFyyNEENPLDADLLIVDEASMVDTRLMAALLSAIPAGA-RLILVGDPDQLPSVGAGNVLRDLIASKGVPTVELTE 153
|
..
gi 1883232606 1129 IV 1130
Cdd:cd17933 154 VF 155
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
968-1156 |
1.79e-35 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 134.23 E-value: 1.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 968 MLTSGQRAATRMILETSDRFTVVQGYAGVGKTTqfraVMSAVNMLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASF 1046
Cdd:pfam13604 1 TLNAEQAAAVRALLTSGDRVAVLVGPAGTGKTT----ALKALREAWEAAGYRVIGLAPTGRAAKVLGeELGIPADTIAKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1047 LHDTQLQQRSGetpdfSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFR-LQQTRsaADVAI 1125
Cdd:pfam13604 77 LHRLGGRAGLD-----PGTLLIVDEAGMVGTRQMARLLKLAEDAGARVILVGDPRQLPSVEAGGAFRdLLAAG--IGTAE 149
|
170 180 190
....*....|....*....|....*....|..
gi 1883232606 1126 MKEIVRQT-PELREAVYSLINRDVERALSGLE 1156
Cdd:pfam13604 150 LTEIVRQRdPWQRAASLALRDGDPAEALDALA 181
|
|
| TraI_2B |
pfam18340 |
DNA relaxase TraI 2B/2B-like domain; This is the 2B and 2B-like sub-domain found in TraI (EC:5. ... |
633-712 |
1.91e-35 |
|
DNA relaxase TraI 2B/2B-like domain; This is the 2B and 2B-like sub-domain found in TraI (EC:5.99.1.2) a relaxase of F-family plasmids. It contains four domains; a trans-esterase domain that executes the nicking and covalent attachment of the T-strand to the relaxase, a vestigial helicase domain (carrying the 2B/2B-like sub-domain) that operates as an ssDNA-binding domain, an active 5' to 3' helicase domain, and a C-terminal domain that functions as a recruitment platform for relaxosome components. The 2B sub-domains in TraI are formed by residues 625-773 in the vestigial helicase domain and residues 1255-1397 in the active helicase domain. The 2B/2B-like sub-domain interacts with ssDNA where it contributes to the surface area where ssDNA bind. In other words the ssDNA-binding site is located in a groove between the 2B and 2B-like parts of the sub-domain. The sub-domain parts appear to act as clamps holding the ssDNA in place, resulting in the ssDNA being completely surrounded by protein. In previous studies, the 2B/2B-like sub-domain of the TraI vestigial helicase domain has been identified as translocation signal A (TSA) since it contains sequences essential for the recruitment of TraI to the T4S system. Thus, the 2B/2B-like sub-domain plays two major roles in relaxase function: (1) interacting with the DNA and possibly promoting high processivity and (2) mediating recruitment of the relaxosome to the T4S system.
Pssm-ID: 465718 [Multi-domain] Cd Length: 79 Bit Score: 129.70 E-value: 1.91e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 633 ALSPVWLDSRSRYLRDMYRPGMVMEQWNPeTRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPV 712
Cdd:pfam18340 1 TLTPVWLDSKNRRSRDSYREGMVLERWNG-ARKKQRFTIDRVTEKTNSLTLVDAKGETSTLKISEIDSHWRLFRSDKLEV 79
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
969-1450 |
2.48e-23 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 107.58 E-value: 2.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 969 LTSGQRAATRMILEtSDRFTVVQGYAGVGKTTqfraVMSAVNMLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFl 1047
Cdd:TIGR02768 353 LSEEQYEAVRHVTG-SGDIAVVVGRAGTGKST----MLKAAREAWEAAGYRVIGAALSGKAAEGLQaESGIESRTLASL- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1048 hdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRlqqtrsaadvAIMK 1127
Cdd:TIGR02768 427 ---EYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGAAFR----------AIAE 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1128 EIvrqtpelreavyslinrdveralsglESVKPSQVPRQEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMt 1207
Cdd:TIGR02768 494 RI--------------------------GYAELETIRRQREAWARQASLELARGDVEKALAAYRDHGHITIHDTREEAI- 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1208 lyEAIVRDYTGRTPEAREQ--TLIVTHLNEDRRVLNSMIHDAREKAGELGKEqvmvpvlntanirdgelrrlstwethrd 1285
Cdd:TIGR02768 547 --EQVVADWKQDLREANPAgsQIMLAHTRKDVRALNEAAREALIERGELGES---------------------------- 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1286 alalvdnvyhriagiskddglITLQDAEGNTRLispreavaegvtlytpdtirvGTGDRMRFTKSDRERGYVANSVWTVT 1365
Cdd:TIGR02768 597 ---------------------ILFQTARGERKF---------------------AAGDRIVFLENNRDLGVKNGMLGTVE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1366 AVSGD--SVTLSDGQQTRVirpgQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLmagfesAYVALSRMKQHV 1443
Cdd:TIGR02768 635 EIEDGrlVVQLDSGELVII----PQAEYDALDHGYATTIHKSQGVTVDRAFVLASKSMDRHL------AYVAMTRHRESV 704
|
....*..
gi 1883232606 1444 QVYTDNR 1450
Cdd:TIGR02768 705 QLYAGKE 711
|
|
| ssDNA_TraI_N |
pfam18272 |
single-stranded DNA binding TraI N-terminal subdomain; This is a subdomain found in TraI ... |
575-627 |
2.31e-18 |
|
single-stranded DNA binding TraI N-terminal subdomain; This is a subdomain found in TraI present in E. coli. Tra1 is a conjugative relaxase that forms part of the Type IV secretion system. This subdomain, referred to as 2A, is located in N-terminal region of the translocation signal (TSA) domain. TSA is known to reside in a larger ssDNA-binding domain.
Pssm-ID: 408086 [Multi-domain] Cd Length: 53 Bit Score: 80.23 E-value: 2.31e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1883232606 575 DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHQ 627
Cdd:pfam18272 1 DKAQRYGRLAKEFVQAVREGEESVAQVSGPREQAVLAGMIRDELKEEGVLGRE 53
|
|
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
967-1450 |
8.20e-12 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 70.58 E-value: 8.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 967 EMLTSGQRAATRMILETSdRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAV-GEMRSAGVDAQTLAS 1045
Cdd:PRK13826 380 ARLSDEQKTAIEHVAGPA-RIAAVVGRAGAGKTTMMKAAREAW----EAAGYRVVGGALAGKAAeGLEKEAGIQSRTLSS 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1046 FlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAadVAI 1125
Cdd:PRK13826 455 W----ELRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIG--YAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1126 MKEIVRQTPE-LREAVYSLINRDVERALSglesvkpsqvprqegawapehsvtefSHSQEAKLAEAQqkamLKGEAFPdv 1204
Cdd:PRK13826 529 LETIYRQREQwMRDASLDLARGNVGKALD--------------------------AYRANGRVIGSR----LKAEAVE-- 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1205 pmTLYEAIVRDYtgrtpEAREQTLIVTHLNEDRRVLNSMihdAREKagelgkeqvmvpvlntanirdgelrrlstwethr 1284
Cdd:PRK13826 577 --SLIADWNRDY-----DPTKTTLILAHLRRDVRMLNEM---ARAK---------------------------------- 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1285 dalaLVDnvyhriagiskddglitlqdaegntrlispREAVAEGVTLYTPDTIR-VGTGDRMRFTKSDRERGyVANSVW- 1362
Cdd:PRK13826 613 ----LVE------------------------------RGIVGEGHAFRTADGERrFAAGDQIVFLKNEGSLG-VKNGMIg 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1363 -TVTAVSGDSV-TLSDGQQTRVIRPGQeRAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLmagfesAYVALSRMK 1440
Cdd:PRK13826 658 kVVEAAPNRIVaEIGEGEHRRQVTVEQ-RFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRHL------TYVAMTRHR 730
|
490
....*....|
gi 1883232606 1441 QHVQVYTDNR 1450
Cdd:PRK13826 731 EDLQLYYGRR 740
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
973-1103 |
1.15e-09 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 58.38 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 973 QRAATRMILEtsDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERprVVGLGPTHRAVGEMRSA-GVDAQTLASFLH-- 1048
Cdd:pfam13245 1 QREAVRTALP--SKVVLLTGGPGTGKTTTIRHiVALLVALGGVSFP--ILLAAPTGRAAKRLSERtGLPASTIHRLLGfd 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1883232606 1049 -DTQLQQRSGETPDFSNTLFLLDESSMVgntDMARAYALIAA--GGGRAVASGDTDQL 1103
Cdd:pfam13245 77 dLEAGGFLRDEEEPLDGDLLIVDEFSMV---DLPLAYRLLKAlpDGAQLLLVGDPDQL 131
|
|
| SF1_C_RecD |
cd18809 |
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11. ... |
1396-1447 |
7.58e-08 |
|
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350196 [Multi-domain] Cd Length: 80 Bit Score: 51.41 E-value: 7.58e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1883232606 1396 LAYAITAHGAQGASETFAIALEGTEGNrklMAGFESAYVALSRMKQHVQVYT 1447
Cdd:cd18809 32 QAYAMTIHKSQGSEFDRVIVVLPTSHP---MLSRGLLYTALTRARKLLTLVG 80
|
|
| PRK13889 |
PRK13889 |
conjugal transfer relaxase TraA; Provisional |
968-1719 |
2.68e-06 |
|
conjugal transfer relaxase TraA; Provisional
Pssm-ID: 237546 [Multi-domain] Cd Length: 988 Bit Score: 52.38 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 968 MLTSGQRAATRMILETSDrFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMRS-AGVDAQTLASF 1046
Cdd:PRK13889 346 VLSGEQADALAHVTDGRD-LGVVVGYAGTGKSAMLGVAREAW----EAAGYEVRGAALSGIAAENLEGgSGIASRTIASL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1047 LHDTQlQQRSGETpdfSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAAdvAIM 1126
Cdd:PRK13889 421 EHGWG-QGRDLLT---SRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFRSIHERHGG--AEI 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1127 KEIVRQTPE-LREAVYSLINRDVERALsglesvkpsqvprqegawapeHSVTEFSHSQEAKLAEAQQKAmlkgeafpdvp 1205
Cdd:PRK13889 495 GEVRRQREDwQRDATRDLATGRTGEAL---------------------DAYEAHGMVHAAATREQARAD----------- 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1206 mtLYEAIVRDytgRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGkEQVMVPVlntanirdgelrrlstwethrd 1285
Cdd:PRK13889 543 --LIDRWDRD---RQAAPDRSRIILTHTNDEVRALNEAARERMRAAGDLG-DDVRVTV---------------------- 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1286 alalvdnvyhriagiskddglitlqdaEGNTRlispreavaegvtlytpdtiRVGTGDRMRFTKSDRERGYVANSVWTVT 1365
Cdd:PRK13889 595 ---------------------------ERGER--------------------SFASGDRVMFLQNERGLGVKNGTLGTIE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1366 AVSGDSVT--LSDGQQTRVirpgQERAEQHIDLAYAITAHGAQGAS--ETFAIALEGTEGNrklmagfeSAYVALSRMKQ 1441
Cdd:PRK13889 628 QVSAQSMSvrLDDGRSVAF----DLKDYDRIDHGYAATIHKAQGMTvdRTHVLATPGMDAH--------SSYVALSRHRD 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1442 HVQVYT-----DNRQGWTDTINNAVQKGTAHDVFEPKPDREVmnAERLFSTARELRDVAAGRAV-LRQAGLAGGDSPARF 1515
Cdd:PRK13889 696 GVDLHYgrddfADRDRLVRTLSRDRAKDMASDYERADPAQSY--AERRGITFRERVAEIVRKIVpEKLRGMFDGLRLPDP 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1516 IAPGRkyPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIA 1595
Cdd:PRK13889 774 VPGPE--AGRRPERESAAATTDAPARTVAADPEAALRQARTRALVRHARAVDAIFRMQEQGGPVLPHQVKELQEARKAFE 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1596 RDNPDSGVVVRIAGEGRPWNPGAITGGRVwgdipdnsvqpgagngepvtAEVLAQRQAEEAIRRETERRADEIVRKMAen 1675
Cdd:PRK13889 852 EVRPYGSHDAEAAYKKNPELAAEAASGRP--------------------ARAIRALQLETELRTDPARRADRFVERWQ-- 909
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1676 KPDLPDGRTEQAvREIAGQERERAVTS------EREAALpESVLREPQRE 1719
Cdd:PRK13889 910 KLDRASQRQYQA-GDMSGYKATRAAMGdmakslERDPQL-ESLLAGRKRE 957
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
1645-1741 |
7.82e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 43.87 E-value: 7.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1645 AEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLP--------DGRTEQAVREIAGQERERAVTSEREAALPESVLREP 1716
Cdd:pfam15558 20 EQRMRELQQQAALAWEELRRRDQKRQETLERERRLLlqqsqeqwQAEKEQRKARLGREERRRADRREKQVIEKESRWREQ 99
|
90 100
....*....|....*....|....*
gi 1883232606 1717 QREREAVRevvRENLLQERLQQMER 1741
Cdd:pfam15558 100 AEDQENQR---QEKLERARQEAEQR 121
|
|
| PRK02292 |
PRK02292 |
V-type ATP synthase subunit E; Provisional |
1641-1750 |
3.95e-03 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 235026 [Multi-domain] Cd Length: 188 Bit Score: 40.37 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883232606 1641 EPVTAEVLAQRQAE-EAIRRETERRADEIVRKMAENKPDLPDGRTEQAVREIAgQERERAVTSereAALpesvlrEPQRE 1719
Cdd:PRK02292 4 ETVVEDIRDEARARaSEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIE-QLREQELSS---AKL------EAKRE 73
|
90 100 110
....*....|....*....|....*....|....
gi 1883232606 1720 R-EAVREVVRE--NLLQERLQQMERDMVRDLQKE 1750
Cdd:PRK02292 74 RlNARKEVLEDvrNQVEDEIASLDGDKREELTKS 107
|
|
| |
