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Conserved domains on  [gi|1881816446|gb|QMJ25727|]
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cytochrome b, partial (mitochondrion) [Lophuromys machangui]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 768.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00100    4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00100   84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00100  164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00100  244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLK 375
Cdd:MTH00100  324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 768.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00100    4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00100   84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00100  164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00100  244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLK 375
Cdd:MTH00100  324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
8-370 2.36e-132

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 384.14  E-value: 2.36e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   8 IKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMF 87
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  88 FICLFLHVGRGIYYGSYTFIE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 165
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 166 SVDKATLTRFFAFH-FILPFIIAALAMVHLLFLHETGSNNPTGLD----PNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPIS 318
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1881816446 319 QVLFWMLVANLLILTWIGGQPVehPFIIIGQLASISYFSIILILMPISGLIE 370
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 6-203 2.00e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.81  E-value: 2.00e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   6 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 85
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  86 MFFICLFLHVGRGIYYGSY--TFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 163
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1881816446 164 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSN 203
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
15-201 1.34e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 267.71  E-value: 1.34e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  15 FIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 94
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  95 VGRGIYYG--SYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 172
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1881816446 173 TRFFAFHFILPFIIAALAMVHLLFLHETG 201
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 255-322 3.29e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.29e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1881816446 255 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHT-SKQRSLMFRPISQVLF 322
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 768.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00100    4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00100   84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00100  164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00100  244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLK 375
Cdd:MTH00100  324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00119
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 693.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00119    5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00119   85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00119  165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00119  245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLKL 376
Cdd:MTH00119  325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 681.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLKLN 377
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
CYTB MTH00074
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 677.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00074    5 IRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00074   85 ANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00074  165 IWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLS 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00074  245 LFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLKL 376
Cdd:MTH00074  325 LFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 645.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPI 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 8-363 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 616.02  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   8 IKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMF 87
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  88 FICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSV 167
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 168 DKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLVLFSPDLL 247
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 248 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQVLFWMLVA 327
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1881816446 328 NLLILTWIGGQPVEHPFIIIGQLASISYFSIILILM 363
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 598.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00145    5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00145   85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00145  165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00145  245 LFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQV 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILmPISGLIENAML 374
Cdd:MTH00145  325 LFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-374 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 597.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAML 374
Cdd:MTH00034  324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-375 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 562.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00016  165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00016  245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSiILILMPISGLIENAMLK 375
Cdd:MTH00016  325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 521.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00022  243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLKLN 377
Cdd:MTH00022  323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
CYTB MTH00053
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 520.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGLIENAMLKL 376
Cdd:MTH00053  325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00224
cytochrome b; Provisional
 1-375 1.50e-176

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 495.98  E-value: 1.50e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   1 IRKTHPLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLH 80
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  81 ANGASMFFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 160
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 161 IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQV 320
Cdd:MTH00224  245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1881816446 321 LFWMLVANLLILTWIGGQPVEHPFIIIGQLASISYFSiILILMPISGLIENAMLK 375
Cdd:MTH00224  325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 16-377 2.29e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 393.92  E-value: 2.29e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  16 IDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 95
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  96 GRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 175
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 176 FAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLVLFS--PDLLGDPDNY 253
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 254 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQVLFWMLVANLLILT 333
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1881816446 334 WIGGQPV-EHPFIIIGQLASISYFSIILILMPISGLIENAMLKLN 377
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEYN 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
8-370 2.36e-132

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 384.14  E-value: 2.36e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   8 IKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMF 87
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  88 FICLFLHVGRGIYYGSYTFIE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 165
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 166 SVDKATLTRFFAFH-FILPFIIAALAMVHLLFLHETGSNNPTGLD----PNADKIPFHPYYTIKDFLGILLLLFFLLSLV 240
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 241 LFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPIS 318
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1881816446 319 QVLFWMLVANLLILTWIGGQPVehPFIIIGQLASISYFSIILILMPISGLIE 370
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 9-363 1.24e-120

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 353.09  E-value: 1.24e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   9 KIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFF 88
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  89 ICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVD 168
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 169 KATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDfLGILLLLFFLLSLVLFSPDLLG 248
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 249 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQrslMFRPISQVLFWMLVAN 328
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1881816446 329 LLILTWIGGQPVEHPFIIIGQLASISYFSIILILM 363
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 6-203 2.00e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.81  E-value: 2.00e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   6 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 85
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  86 MFFICLFLHVGRGIYYGSY--TFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 163
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1881816446 164 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSN 203
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 7-361 5.63e-94

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 284.95  E-value: 5.63e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446   7 LIKIINHSFIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASM 86
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  87 FFICLFLHVGRGIYYGSYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS 166
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 167 VDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPN-ADKIPFHPYYTIKDFLGILLLLFFLLSLVLFSPD 245
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 246 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVLSILVLALLPlihtSKQRSLMFRPISQVLFWML 325
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1881816446 326 VANLLILTWIGGQPVEHPFIIIGQLASISYFSIILI 361
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
15-201 1.34e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 267.71  E-value: 1.34e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  15 FIDLPAPSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 94
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  95 VGRGIYYG--SYTFIETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 172
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1881816446 173 TRFFAFHFILPFIIAALAMVHLLFLHETG 201
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 204-351 3.04e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 170.52  E-value: 3.04e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 204 NPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 283
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1881816446 284 KLGGVLALVLSILVLALLPLIHTSKQRSlMFRPISQVLFWMLVANLLILTWIGGQPVEHPFIIIGQLA 351
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
255-355 1.54e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 159.18  E-value: 1.54e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 255 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMFRPISQVLFWMLVANLLILTW 334
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1881816446 335 IGGQPVEHPFIIIGQLASISY 355
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 30-205 2.07e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 144.85  E-value: 2.07e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  30 FGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFIE- 108
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 109 -TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FILPFII 186
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1881816446 187 AALAMVHLLFLHETGSNNP 205
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
85-250 3.78e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.38  E-value: 3.78e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  85 SMFFICLFLHVGRGIYYGSYTFIE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIW 162
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 163 GGFSVDKATLTRFFAFHF-ILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLLFFLLSLVL 241
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1881816446 242 FSPDLLGDP 250
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 21-205 4.80e-36

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 130.61  E-value: 4.80e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446  21 PSNISSWWNFGSLLGVCLILQIATGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 100
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 101 YGSYTFIE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAF 178
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1881816446 179 H-FILPFIIAALAMVHLLFLHETGSNNP 205
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 255-336 3.44e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.96  E-value: 3.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1881816446 255 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHT-SKQRSLMFRPISQVLFwmLVANLLILt 333
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVF--LFGTLVTL- 142


                  ...
gi 1881816446 334 WIG 336
Cdd:COG5679   143 WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 255-322 4.42e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.70  E-value: 4.42e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1881816446 255 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHTSKQRSLMF-RPISQVLF 322
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 255-322 3.29e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.29e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1881816446 255 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLALLPLIHT-SKQRSLMFRPISQVLF 322
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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