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Conserved domains on  [gi|187979142|gb|EDU45768|]
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DnaJ domain containing protein [Pyrenophora tritici-repentis Pt-1C-BFP]

Protein Classification

DnaJ and zf-C2H2_jaz domain-containing protein( domain architecture ID 13425065)

protein containing domains DnaJ, ZUO1, and zf-C2H2_jaz

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 20-85 2.56e-24

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 104.46  E-value: 2.56e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK10767   3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQKRAAYD 67
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 312-337 6.83e-11

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


:

Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 56.79  E-value: 6.83e-11
                          10        20
                  ....*....|....*....|....*.
gi 187979142  312 YECVACNKTFKSERQYDAHEKSKKHQ 337
Cdd:pfam12171   2 FYCVLCDKYFKSENALQNHLKSKKHK 27
ZUO1 super family cl34965
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 20-258 1.59e-07

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5269:

Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 53.50  E-value: 1.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVER---DATQDELKKAYRKKALELHPDRNY-GDVERATALFAEVRNAYEVLSDEQERAWYDAHEgtilrgg 95
Cdd:COG5269   42 KVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAaGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND------- 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  96 TGEEVGEDtwqgdiRMTTSDElarmmgkfrgnvdftdspngFFGFVRETFEQlakeeayaAAYEDIEAPeYPTFGHKDDT 175
Cdd:COG5269  115 FDADVPPP------RIYTPDE--------------------FFEVWEPVFER--------EARFSKKQP-VPSLGPSDSS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142 176 YEGVvRDFYTAWNGFATVKNFAWLDRYQLSRADYREERKAMAKLNQKLRDEGRKDFNEAVRALVAFVRKRDPRYTPQTEE 255
Cdd:COG5269  160 LKEV-EEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQ 238


                 ...
gi 187979142 256 QKA 258
Cdd:COG5269  239 EKE 241
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 20-85 2.56e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 104.46  E-value: 2.56e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK10767   3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 22-85 3.76e-24

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 95.62  E-value: 3.76e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187979142   22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPE-AEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 22-109 7.77e-22

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 96.90  E-value: 7.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142   22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNyGDVErATALFAEVRNAYEVLSDEQERAWYD-----AHEGTILRGGT 96
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN-KDKE-AEEKFKEINEAYEVLSDPEKRAQYDqfghaGFNGGGGGGGG 78

                          90
                  ....*....|...
gi 187979142   97 GEEVGEDTWQGDI 109
Cdd:TIGR02349  79 GFNGFDIGFFGDF 91
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 22-93 8.30e-22

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 91.69  E-value: 8.30e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187979142  22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDvERATALFAEVRNAYEVLSDEQERAWYDAHEGTILR 93
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD-PEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAEL 71
DnaJ smart00271
DnaJ molecular chaperone homology domain;
21-79 1.19e-19

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 82.67  E-value: 1.19e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 187979142    21 TSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVERATALFAEVRNAYEVLSDEQ 79
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 23-77 9.34e-19

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 79.90  E-value: 9.34e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDRNyGDVERATALFAEVRNAYEVLSD 77
Cdd:cd06257    2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKN-PDDPEAEEKFKEINEAYEVLSD 55
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 312-337 6.83e-11

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 56.79  E-value: 6.83e-11
                          10        20
                  ....*....|....*....|....*.
gi 187979142  312 YECVACNKTFKSERQYDAHEKSKKHQ 337
Cdd:pfam12171   2 FYCVLCDKYFKSENALQNHLKSKKHK 27
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 20-258 1.59e-07

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 53.50  E-value: 1.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVER---DATQDELKKAYRKKALELHPDRNY-GDVERATALFAEVRNAYEVLSDEQERAWYDAHEgtilrgg 95
Cdd:COG5269   42 KVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAaGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND------- 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  96 TGEEVGEDtwqgdiRMTTSDElarmmgkfrgnvdftdspngFFGFVRETFEQlakeeayaAAYEDIEAPeYPTFGHKDDT 175
Cdd:COG5269  115 FDADVPPP------RIYTPDE--------------------FFEVWEPVFER--------EARFSKKQP-VPSLGPSDSS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142 176 YEGVvRDFYTAWNGFATVKNFAWLDRYQLSRADYREERKAMAKLNQKLRDEGRKDFNEAVRALVAFVRKRDPRYTPQTEE 255
Cdd:COG5269  160 LKEV-EEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQ 238


                 ...
gi 187979142 256 QKA 258
Cdd:COG5269  239 EKE 241
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 312-341 3.54e-06

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 43.78  E-value: 3.54e-06
                           10        20        30
                   ....*....|....*....|....*....|
gi 187979142   312 YECVACNKTFKSERQYDAHEKSKKHQKAIQ 341
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 20-85 2.56e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 104.46  E-value: 2.56e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK10767   3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 22-85 3.76e-24

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 95.62  E-value: 3.76e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187979142   22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPE-AEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 22-109 7.77e-22

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 96.90  E-value: 7.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142   22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNyGDVErATALFAEVRNAYEVLSDEQERAWYD-----AHEGTILRGGT 96
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN-KDKE-AEEKFKEINEAYEVLSDPEKRAQYDqfghaGFNGGGGGGGG 78

                          90
                  ....*....|...
gi 187979142   97 GEEVGEDTWQGDI 109
Cdd:TIGR02349  79 GFNGFDIGFFGDF 91
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 22-93 8.30e-22

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 91.69  E-value: 8.30e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187979142  22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDvERATALFAEVRNAYEVLSDEQERAWYDAHEGTILR 93
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD-PEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAEL 71
PRK14289 PRK14289
molecular chaperone DnaJ;
20-140 9.85e-20

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 91.05  E-value: 9.85e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD--AHEGTILRGGTG 97
Cdd:PRK14289   4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDPDKRSRYDqfGHAGVGGAAGGG 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 187979142  98 EEVGEDTWQGDIRMTTSDELARMMGKFrgnvdftdspNGFFGF 140
Cdd:PRK14289  83 GFSGEGMSMEDIFSMFGDIFGGHGGGF----------GGFGGF 115
DnaJ smart00271
DnaJ molecular chaperone homology domain;
21-79 1.19e-19

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 82.67  E-value: 1.19e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 187979142    21 TSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVERATALFAEVRNAYEVLSDEQ 79
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 19-97 1.22e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 90.59  E-value: 1.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYDAH-----EGTILR 93
Cdd:PRK14294   2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDPKKRGIYDQYgheglSGTGFS 80


                 ....
gi 187979142  94 GGTG 97
Cdd:PRK14294  81 GFSG 84
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 21-145 3.06e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 89.90  E-value: 3.06e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  21 TSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYDAHegtilrGGTGEEV 100
Cdd:PRK14284   1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDAQKRESYDRY------GKDGPFA 73

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 187979142 101 GEDTWQGDIRMTTSDELARMMGKFRGNVDFTDSP-NGFFGFVRETF 145
Cdd:PRK14284  74 GAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFfEGLFGGLGEAF 119
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
21-86 3.51e-19

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 82.46  E-value: 3.51e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  21 TSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVERATALFAEVRNAYEVLSDEQERAWYDA 86
Cdd:COG2214    5 KDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKALAEELFQRLNEAYEVLSDPERRAEYDR 70
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 19-97 6.13e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 88.65  E-value: 6.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD--AHEGTILRGGT 96
Cdd:PRK14301   2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDAEKRARYDrfGHAGVNGNGGF 80


                 .
gi 187979142  97 G 97
Cdd:PRK14301  81 G 81
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 23-77 9.34e-19

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 79.90  E-value: 9.34e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDRNyGDVERATALFAEVRNAYEVLSD 77
Cdd:cd06257    2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKN-PDDPEAEEKFKEINEAYEVLSD 55
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 19-85 1.05e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 87.93  E-value: 1.05e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVERATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK14282   2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYD 68
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 21-85 2.12e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 87.03  E-value: 2.12e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187979142  21 TSYYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--PDEEAQEKFKEISVAYEVLSDPEKRRIVD 65
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 20-85 2.16e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 84.08  E-value: 2.16e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK14277   4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKE-AEQKFKEINEAYEILSDPQKRAQYD 68
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 20-97 6.86e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 82.44  E-value: 6.86e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGdvERATALFAEVRNAYEVLSDEQERAWYDAHEGTILRGGTG 97
Cdd:PRK14276   3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFG 78
PRK14280 PRK14280
molecular chaperone DnaJ;
20-103 7.24e-17

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 82.46  E-value: 7.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYD--AHEGTILRGGTG 97
Cdd:PRK14280   3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN--KEEGADEKFKEISEAYEVLSDDQKRAQYDqfGHAGPNQGFGGG 80


                 ....*.
gi 187979142  98 EEVGED 103
Cdd:PRK14280  81 GFGGGD 86
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 20-89 9.84e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 82.16  E-value: 9.84e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYD--AHEG 89
Cdd:PRK14281   2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSNDDKRRRYDqfGHAG 72
PRK14295 PRK14295
molecular chaperone DnaJ;
19-85 1.93e-16

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 81.43  E-value: 1.93e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVeRATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK14295   7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKKRKEYD 72
PRK14297 PRK14297
molecular chaperone DnaJ;
20-97 2.10e-16

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 80.98  E-value: 2.10e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYDAHEGTILRGGTG 97
Cdd:PRK14297   3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKE-AEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGG 79
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 19-97 2.20e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 80.81  E-value: 2.20e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDvERATALFAEVRNAYEVLSDEQERAWYDAHEGTILRGGTG 97
Cdd:PRK14285   1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGG 78
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 23-82 2.66e-16

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 73.11  E-value: 2.66e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERA 82
Cdd:COG5407    2 PYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPK-AEERFKEINEAYELLSDAEKRA 60
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 20-124 3.02e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 80.58  E-value: 3.02e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGdvERATALFAEVRNAYEVLSDEQERAWYD--AHEGtiLRGGTG 97
Cdd:PRK14291   2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDqfGHAA--FSGSGQ 77

                         90       100
                 ....*....|....*....|....*..
gi 187979142  98 EEVGEDTWQGDIRMTTSDELARMMGKF 124
Cdd:PRK14291  78 QQQGQEGFSDFGGGNIEDILEDVFDIF 104
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 20-89 9.36e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 79.12  E-value: 9.36e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYD--AHEG 89
Cdd:PRK14298   4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN--KEPDAEEKFKEISEAYAVLSDAEKRAQYDrfGHAG 73
PRK14293 PRK14293
molecular chaperone DnaJ;
23-85 1.37e-15

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 78.49  E-value: 1.37e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDRNY--GDVERatalFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK14293   5 YYEILGVSRDADKDELKRAYRRLARKYHPDVNKepGAEDR----FKEINRAYEVLSDPETRARYD 65
PRK14279 PRK14279
molecular chaperone DnaJ;
19-97 1.99e-15

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 78.24  E-value: 1.99e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDvERATALFAEVRNAYEVLSDEQERAWYDAHEGTILRGGTG 97
Cdd:PRK14279   7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFG 84
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 22-97 1.82e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 75.03  E-value: 1.82e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  22 SYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYDAHEGTILRGGTG 97
Cdd:PRK14286   5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAG 79
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 23-98 2.28e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 74.58  E-value: 2.28e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVERATALFAEVRNAYEVLSDEQERAWYDaHEGTILRGGTGE 98
Cdd:PRK14290   5 YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYD-QTGTVDFGAGGS 79
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 23-101 3.85e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 74.16  E-value: 3.85e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYDahegtilRGGTGEEVG 101
Cdd:PRK14292   4 YYELLGVSRTASADEIKSAYRKLALKYHPDRN--KEKGAAEKFAQINEAYAVLSDAEKRAHYD-------RFGTAPGAG 73
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 20-107 4.79e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 73.71  E-value: 4.79e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYD--AHEGtiLRGGTG 97
Cdd:PRK14283   4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--EEEGAEEKFKEISEAYAVLSDDEKRQRYDqfGHAG--MDGFSQ 79

                         90
                 ....*....|....*
gi 187979142  98 EEV-----GEDTWQG 107
Cdd:PRK14283  80 EDIfnninFEDIFQG 94
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 18-97 1.27e-13

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 72.93  E-value: 1.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  18 EVKTS-YYLLLGVERDATQDELKKAYRKKALELHPDRNyGDVERatalFAEVRNAYEVLSDEQERAWYDAHEGTILRGGT 96
Cdd:PTZ00037  24 EVDNEkLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDPEK----FKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE 98


                 .
gi 187979142  97 G 97
Cdd:PTZ00037  99 Q 99
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 20-107 1.98e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 71.12  E-value: 1.98e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGdvERATALFAEVRNAYEVLSDEQERAWYDAHegtilrggtGEE 99
Cdd:PRK14299   3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTY---------GTT 71


                 ....*...
gi 187979142 100 VGEDTWQG 107
Cdd:PRK14299  72 AASAGWQG 79
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 23-125 6.15e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 70.43  E-value: 6.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDR-NYGDVERAtalFAEVRNAYEVLSDEQERAWY-----DAHEGTILRGGT 96
Cdd:PRK14300   5 YYQILGVSKTASQADLKKAYLKLAKQYHPDTtDAKDAEKK---FKEINAAYDVLKDEQKRAAYdrfghDAFQNQQSRGGG 81

                         90       100
                 ....*....|....*....|....*....
gi 187979142  97 GEEVGedtWQGDIRMTTSDELARMMGKFR 125
Cdd:PRK14300  82 GNHGG---FHPDINDIFGDFFSDFMGGSR 107
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 20-85 3.45e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 68.11  E-value: 3.45e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK14287   3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN--KAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 312-337 6.83e-11

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 56.79  E-value: 6.83e-11
                          10        20
                  ....*....|....*....|....*.
gi 187979142  312 YECVACNKTFKSERQYDAHEKSKKHQ 337
Cdd:pfam12171   2 FYCVLCDKYFKSENALQNHLKSKKHK 27
PRK14288 PRK14288
molecular chaperone DnaJ;
19-87 1.25e-10

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 63.17  E-value: 1.25e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187979142  19 VKTSYYLLLGVERDATQDELKKAYRKKALELHPDRNYGDVErATALFAEVRNAYEVLSDEQERAWYDAH 87
Cdd:PRK14288   1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKE-AEEKFKLINEAYGVLSDEKKRALYDRY 68
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
23-79 6.78e-10

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 55.57  E-value: 6.78e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDR-----NYGDVERATALFAEVRNAYEVLSDEQ 79
Cdd:COG1076    6 AFELLGLPPDADDAELKRAYRKLQREHHPDRlaaglPEEEQRLALQKAAAINEAYETLKDPR 67
PRK10266 PRK10266
curved DNA-binding protein;
23-85 7.65e-09

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 57.14  E-value: 7.65e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187979142  23 YYLLLGVERDATQDELKKAYRKKALELHPDrnYGDVERATALFAEVRNAYEVLSDEQERAWYD 85
Cdd:PRK10266   6 YYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 20-146 1.31e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 56.88  E-value: 1.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVERDATQDELKKAYRKKALELHPDRNygDVERATALFAEVRNAYEVLSDEQERAWYDAHEGTILRGGTGEE 99
Cdd:PRK14296   3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 187979142 100 VGedtwqgdirMTTSDELARMMGKfRGNVDFTDSPNGFFGFVRETFE 146
Cdd:PRK14296  81 SN---------FGDFEDLFSNMGS-SGFSSFTNIFSDFFGSNKSDYQ 117
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 312-336 4.67e-08

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 48.65  E-value: 4.67e-08
                          10        20
                  ....*....|....*....|....*
gi 187979142  312 YECVACNKTFKSERQYDAHEKSKKH 336
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 20-258 1.59e-07

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 53.50  E-value: 1.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  20 KTSYYLLLGVER---DATQDELKKAYRKKALELHPDRNY-GDVERATALFAEVRNAYEVLSDEQERAWYDAHEgtilrgg 95
Cdd:COG5269   42 KVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAaGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND------- 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142  96 TGEEVGEDtwqgdiRMTTSDElarmmgkfrgnvdftdspngFFGFVRETFEQlakeeayaAAYEDIEAPeYPTFGHKDDT 175
Cdd:COG5269  115 FDADVPPP------RIYTPDE--------------------FFEVWEPVFER--------EARFSKKQP-VPSLGPSDSS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187979142 176 YEGVvRDFYTAWNGFATVKNFAWLDRYQLSRADYREERKAMAKLNQKLRDEGRKDFNEAVRALVAFVRKRDPRYTPQTEE 255
Cdd:COG5269  160 LKEV-EEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQ 238


                 ...
gi 187979142 256 QKA 258
Cdd:COG5269  239 EKE 241
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 312-341 3.54e-06

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 43.78  E-value: 3.54e-06
                           10        20        30
                   ....*....|....*....|....*....|
gi 187979142   312 YECVACNKTFKSERQYDAHEKSKKHQKAIQ 341
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
PHA03102 PHA03102
Small T antigen; Reviewed
 26-61 6.62e-04

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 40.42  E-value: 6.62e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 187979142  26 LLGVERDATQDE--LKKAYRKKALELHPDRNyGDVERA 61
Cdd:PHA03102  10 LLGLPRSAWGNLplMRKAYLRKCLEFHPDKG-GDEEKM 46
djlA PRK09430
co-chaperone DjlA;
24-52 1.01e-03

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 40.95  E-value: 1.01e-03
                         10        20
                 ....*....|....*....|....*....
gi 187979142  24 YLLLGVERDATQDELKKAYRKKALELHPD 52
Cdd:PRK09430 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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