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Conserved domains on  [gi|1878426123|gb|KAF5910262|]
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uncharacterized protein DAT39_000343 [Clarias magur]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4657 super family cl21355
Domain of unknown function (DUF4657); This family of proteins is found in eukaryotes. Proteins ...
 322-351 6.94e-04

Domain of unknown function (DUF4657); This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 370 amino acids in length.


The actual alignment was detected with superfamily member pfam15552:

Pssm-ID: 464762  Cd Length: 301  Bit Score: 41.75  E-value: 6.94e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1878426123 322 GSGLGYLEHICQLIEKIGQLQEHNLKLQKQ 351
Cdd:pfam15552 123 GQGLRYLEHLCLVLEQMARLQQLYLQLQTQ 152
 
Name Accession Description Interval E-value
DUF4657 pfam15552
Domain of unknown function (DUF4657); This family of proteins is found in eukaryotes. Proteins ...
 322-351 6.94e-04

Domain of unknown function (DUF4657); This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 370 amino acids in length.


Pssm-ID: 464762  Cd Length: 301  Bit Score: 41.75  E-value: 6.94e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1878426123 322 GSGLGYLEHICQLIEKIGQLQEHNLKLQKQ 351
Cdd:pfam15552 123 GQGLRYLEHLCLVLEQMARLQQLYLQLQTQ 152
 
Name Accession Description Interval E-value
DUF4657 pfam15552
Domain of unknown function (DUF4657); This family of proteins is found in eukaryotes. Proteins ...
 322-351 6.94e-04

Domain of unknown function (DUF4657); This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 370 amino acids in length.


Pssm-ID: 464762  Cd Length: 301  Bit Score: 41.75  E-value: 6.94e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1878426123 322 GSGLGYLEHICQLIEKIGQLQEHNLKLQKQ 351
Cdd:pfam15552 123 GQGLRYLEHLCLVLEQMARLQQLYLQLQTQ 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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