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Conserved domains on  [gi|1877795013|ref|YP_009902645|]
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hypothetical protein H1O01_gp86 [Klebsiella phage vB_KpnS_Domnhall]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DHBP_synthase super family cl42305
3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-Dihydroxy-2-butanone 4-phosphate is ...
 15-66 7.30e-03

3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin. Sometimes found as a bifunctional enzyme with pfam00925.


The actual alignment was detected with superfamily member PRK05773:

Pssm-ID: 478110  Cd Length: 219  Bit Score: 33.11  E-value: 7.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1877795013  15 TVTGIRMSESVDTITPLAFPVTQVETDSKKGFIFIYKNFNAPLRVEIFIARG 66
Cdd:PRK05773  104 TKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGRG 155
 
Name Accession Description Interval E-value
PRK05773 PRK05773
3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
 15-66 7.30e-03

3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated


Pssm-ID: 235601  Cd Length: 219  Bit Score: 33.11  E-value: 7.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1877795013  15 TVTGIRMSESVDTITPLAFPVTQVETDSKKGFIFIYKNFNAPLRVEIFIARG 66
Cdd:PRK05773  104 TKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGRG 155
 
Name Accession Description Interval E-value
PRK05773 PRK05773
3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
 15-66 7.30e-03

3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated


Pssm-ID: 235601  Cd Length: 219  Bit Score: 33.11  E-value: 7.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1877795013  15 TVTGIRMSESVDTITPLAFPVTQVETDSKKGFIFIYKNFNAPLRVEIFIARG 66
Cdd:PRK05773  104 TKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGRG 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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