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Conserved domains on  [gi|187473879|gb|ACD11689|]
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cytochrome b, partial (mitochondrion) [Megaladapis edwardsi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-63 1.67e-38

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 130.14  E-value: 1.67e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00100  59 TTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-63 1.67e-38

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 130.14  E-value: 1.67e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00100  59 TTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-63 1.49e-20

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 79.72  E-value: 1.49e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSH--TLSETWNIGIILLL 63
Cdd:cd00284   51 VTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLL 115
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-63 4.26e-19

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 75.50  E-value: 4.26e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187473879    1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYG--SHTLSETWNIGIILLL 63
Cdd:pfam00033  42 VTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-63 4.48e-17

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 72.52  E-value: 4.48e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHT----LseTWNIGIILLL 63
Cdd:COG1290   68 ASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLL 132
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-63 1.67e-38

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 130.14  E-value: 1.67e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00100  59 TTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121
CYTB MTH00119
cytochrome b; Provisional
 1-63 5.23e-33

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 115.77  E-value: 5.23e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00119  60 ISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122
CYTB MTH00131
cytochrome b; Provisional
 2-63 5.51e-33

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 115.52  E-value: 5.51e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187473879   2 TTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00131  60 STAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLL 121
CYTB MTH00074
cytochrome b; Provisional
 1-63 1.26e-31

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 112.08  E-value: 1.26e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00074  60 TSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLF 122
CYTB MTH00156
cytochrome b; Provisional
 1-63 5.95e-31

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 109.87  E-value: 5.95e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00156  49 IELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILF 111
CYTB MTH00191
cytochrome b; Provisional
 3-63 9.22e-30

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 106.92  E-value: 9.22e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187473879   3 TAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00191  58 LAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118
CYTB MTH00145
cytochrome b; Provisional
 4-63 5.15e-29

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 104.99  E-value: 5.15e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473879   4 AFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00145  63 AFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLL 122
CYTB MTH00016
cytochrome b; Validated
 1-63 5.67e-29

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 104.76  E-value: 5.67e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00016  60 IDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122
CYTB MTH00034
cytochrome b; Validated
 1-63 3.09e-28

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 102.86  E-value: 3.09e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00034  59 ISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121
CYTB MTH00224
cytochrome b; Provisional
 4-63 1.30e-25

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 96.14  E-value: 1.30e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473879   4 AFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00224  63 AFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFI 122
CYTB MTH00022
cytochrome b; Validated
 4-63 1.31e-24

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 93.23  E-value: 1.31e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473879   4 AFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00022  61 AFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFL 120
CYTB MTH00053
cytochrome b; Provisional
 2-63 1.69e-23

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 90.15  E-value: 1.69e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187473879   2 TTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00053  61 NLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-63 1.49e-20

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 79.72  E-value: 1.49e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSH--TLSETWNIGIILLL 63
Cdd:cd00284   51 VTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLL 115
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-63 4.26e-19

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 75.50  E-value: 4.26e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187473879    1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYG--SHTLSETWNIGIILLL 63
Cdd:pfam00033  42 VTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106
CYTB MTH00033
cytochrome b; Provisional
 2-63 6.24e-19

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 77.67  E-value: 6.24e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187473879   2 TTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00033  57 SLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFF 118
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-63 4.48e-17

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 72.52  E-value: 4.48e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHT----LseTWNIGIILLL 63
Cdd:COG1290   68 ASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLL 132
CYTB MTH00086
cytochrome b; Provisional
 3-63 6.15e-14

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 63.81  E-value: 6.15e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187473879   3 TAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00086  50 MAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYL 110
CYTB MTH00046
cytochrome b; Validated
 5-63 7.33e-11

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 54.99  E-value: 7.33e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 187473879   5 FSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSETWNIGIILLL 63
Cdd:MTH00046  54 FFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYL 112
petB CHL00070
cytochrome b6
 1-61 8.44e-07

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 43.56  E-value: 8.44e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187473879   1 TTTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGR-GLYYGSHTLSE-TWNIGIIL 61
Cdd:CHL00070  62 VTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRvYLTGGFKKPRElTWVTGVVL 124
PRK03735 PRK03735
cytochrome b6; Provisional
 2-61 1.46e-06

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 42.78  E-value: 1.46e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187473879   2 TTAFSSIIHICRDMNYGWIIRYLHSNGASMFFLCLFIHIGRGLYYGSHTLSE--TWNIGIIL 61
Cdd:PRK03735  71 KNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLI 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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