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Conserved domains on  [gi|187371752|gb|ACD02785|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Chlorospingus flavopectus honduratius]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-319 1.11e-148

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.54  E-value: 1.11e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00112  28 MAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00112 108 LAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00112 188 GWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLIL 267

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*MIA*LTTMSLTLLPISPMILTTI 319
Cdd:MTH00112 268 QELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-319 1.11e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.54  E-value: 1.11e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00112  28 MAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00112 108 LAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00112 188 GWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLIL 267

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*MIA*LTTMSLTLLPISPMILTTI 319
Cdd:MTH00112 268 QELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-241 5.88e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 5.88e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752    1 MAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQL-----------THPTSC 68
Cdd:pfam00361   6 LMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGLLLLF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   69 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT------LLTALAILSTALGGWMG 142
Cdd:pfam00361  86 LLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLLGSLAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  143 LNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYTMMTATVFL-ALNTIKVLKLSTLMTA----WTKTPSL 213
Cdd:pfam00361 166 LVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAKTMPIL 245

                         250       260
                  ....*....|....*....|....*...
gi 187371752  214 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 241
Cdd:pfam00361 246 ALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-271 3.82e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 87.48  E-value: 3.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAwFTGQWDITQLTHPTS----------- 67
Cdd:COG1007  126 TLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAagganspllll 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  68 -CLILTSAIAMKLGLVPFHFWFPEVLQGSPlttglllstlmklPPIT-----------------LLYMTSPSLNP---TL 126
Cdd:COG1007  205 gLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaallrLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 127 LTALAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YTMMTATVFLALNTIK-----V 197
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkggeA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187371752 198 LKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 271
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-270 8.69e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 8.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752    5 GLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILT----------- 72
Cdd:TIGR01770 130 GLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisllllgivli 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   73 -SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLP---PITLLYMTSPS----LNPTLLTALAILSTALGGWMGLN 144
Cdd:TIGR01770 210 lVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIFLAIIAFLSMLIGNFGALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  145 QTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YTMMTATVFLALNTIKVLK------LSTLMTAWTKTPSLN 214
Cdd:TIGR01770 290 QKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPILA 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 187371752  215 AMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 270
Cdd:TIGR01770 370 ILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-319 1.11e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.54  E-value: 1.11e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00112  28 MAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00112 108 LAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00112 188 GWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLIL 267

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*MIA*LTTMSLTLLPISPMILTTI 319
Cdd:MTH00112 268 QELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-317 2.91e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 349.49  E-value: 2.91e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00135  28 LAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSlNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00135 108 LAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00135 187 GWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLIL 266

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*M-IA*LTTMSLTLLPISPMILT 317
Cdd:MTH00135 267 QELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-319 2.43e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 344.60  E-value: 2.43e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00070  28 LAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00070 108 IAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00070 188 GWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLIL 267

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*MIA*LTTMSLTLLPISPMILTTI 319
Cdd:MTH00070 268 QELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-317 5.07e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 302.92  E-value: 5.07e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00105  28 LAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00105 108 LAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHM 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00105 188 GWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMII 267

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKP-TN*MIA*LTTMSLTLLPISPMILT 317
Cdd:MTH00105 268 QELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTkPMTLLPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-319 2.15e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 257.97  E-value: 2.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00200  28 LIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00200 108 LAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00200 188 GWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLIL 267

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*MIA*LTTMSLTLLPISPMILTTI 319
Cdd:MTH00200 268 QELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-295 1.28e-67

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 215.18  E-value: 1.28e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILTSAIAMKLGLV 82
Cdd:MTH00041  30 WLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLA 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  83 PFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLGW 162
Cdd:MTH00041 110 PCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGW 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 163 MAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQE 242
Cdd:MTH00041 190 IIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYC 269

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 187371752 243 LTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHIKQWRINKPTN 295
Cdd:MTH00041 270 LIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-271 4.26e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 156.14  E-value: 4.26e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGqwditqLTHPTSCLILTSAIAMKLG 80
Cdd:MTH00160  29 GAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTspsLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00160 103 AAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00160 180 GWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIII 259

                        250       260       270
                 ....*....|....*....|....*....|.
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAY 271
Cdd:MTH00160 260 QLLISNNMFFLLFILIMSSLITLYFYLRISY 290
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-275 3.52e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 137.71  E-value: 3.52e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITqlthptscLILTSAIAMKLG 80
Cdd:MTH00144  28 GVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNP-TLLTALAILSTALGGWMGLNQTQIRKILAFSSISH 159
Cdd:MTH00144 100 LFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISH 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 160 LGWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTiKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 239
Cdd:MTH00144 180 TGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLV 258

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 187371752 240 IQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 275
Cdd:MTH00144 259 LISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-283 2.85e-37

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 135.68  E-value: 2.85e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSsMTNAWFTgqwdITQLTHPTScLILTSAIAMKLG 80
Cdd:MTH00011  30 FLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----PSLLKNITA-LMLLVSLMLKLG 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  81 LVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:MTH00011 104 MAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHM 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00011 184 GWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAI 263

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 187371752 241 QELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTN 283
Cdd:MTH00011 264 ETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 3-275 2.32e-31

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 119.78  E-value: 2.32e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMtnAWFTGQWditqlTHPTSCLILTSAIAMKLGLV 82
Cdd:MTH00197  24 WIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LSLLSVVLVILGLLLKLGAF 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  83 PFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLymTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLGW 162
Cdd:MTH00197  97 PFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGW 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 163 MAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLKLSTlMTAWTKTPSLNAMLLLTLLSLAG-LPPLTGFLPKWLIIQ 241
Cdd:MTH00197 175 MLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGLSFLSLGgLPPLSGFFLKWLILT 253

                        250       260       270
                 ....*....|....*....|....*....|....
gi 187371752 242 ELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 275
Cdd:MTH00197 254 SLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-241 5.88e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 5.88e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752    1 MAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQL-----------THPTSC 68
Cdd:pfam00361   6 LMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGLLLLF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   69 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT------LLTALAILSTALGGWMG 142
Cdd:pfam00361  86 LLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLLGSLAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  143 LNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYTMMTATVFL-ALNTIKVLKLSTLMTA----WTKTPSL 213
Cdd:pfam00361 166 LVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAKTMPIL 245

                         250       260
                  ....*....|....*....|....*...
gi 187371752  214 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 241
Cdd:pfam00361 246 ALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-271 3.82e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 87.48  E-value: 3.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAwFTGQWDITQLTHPTS----------- 67
Cdd:COG1007  126 TLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAagganspllll 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  68 -CLILTSAIAMKLGLVPFHFWFPEVLQGSPlttglllstlmklPPIT-----------------LLYMTSPSLNP---TL 126
Cdd:COG1007  205 gLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaallrLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 127 LTALAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YTMMTATVFLALNTIK-----V 197
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkggeA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187371752 198 LKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 271
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 3-240 7.42e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 85.85  E-value: 7.42e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNAWFTGQWDITQLTHPTSC 68
Cdd:MTH00196  19 YLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSVSVPIGY 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  69 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNptLLTALAILSTALGGWMGLNQTQI 148
Cdd:MTH00196  99 LLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFSLFVGAIGALNQTKI 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 149 RKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYTMMTATVF---LALNTIK--VLKLSTLMtawTKTPSLNAMLLL 219
Cdd:MTH00196 177 KRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSGLS---RRLPILAITLAL 253

                        250       260
                 ....*....|....*....|.
gi 187371752 220 TLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00196 254 TFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-269 3.84e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 84.49  E-value: 3.84e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   4 MGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTS------------CLI 70
Cdd:PRK05777 130 LGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgnsllllfgLVF 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  71 LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKL----PPITLLYMTSPSLNPT---LLTALAILSTALGGWMGL 143
Cdd:PRK05777 210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAAL 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 144 NQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YTMMTATVFLALNTIK-----VLKLSTLMTAWTKTPSLN 214
Cdd:PRK05777 290 SQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeAESISDFAGLSKRSPLLA 369

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 187371752 215 AMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRL 269
Cdd:PRK05777 370 AVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-270 8.69e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 8.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752    5 GLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTSCLILT----------- 72
Cdd:TIGR01770 130 GLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisllllgivli 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   73 -SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLP---PITLLYMTSPS----LNPTLLTALAILSTALGGWMGLN 144
Cdd:TIGR01770 210 lVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIFLAIIAFLSMLIGNFGALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  145 QTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YTMMTATVFLALNTIKVLK------LSTLMTAWTKTPSLN 214
Cdd:TIGR01770 290 QKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPILA 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 187371752  215 AMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 270
Cdd:TIGR01770 370 ILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-240 5.72e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 81.22  E-value: 5.72e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   1 MAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDI----TQLTHPTSCLILTSAI 75
Cdd:MTH00199 121 SIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITISL 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  76 AMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTAlaILSTALGGWMGLNQTQIRKILAFS 155
Cdd:MTH00199 201 LFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGALNQTKIKRLLAYS 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 156 SISHLGW----MAIIIIYNPKLTLLNFYLYTMMTATVFLALNTIKVLK--LSTLMTAWTKTPSLNAMLLLTLLSLAGLPP 229
Cdd:MTH00199 279 GIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIALTLALTFLSIAGIPP 358

                        250
                 ....*....|.
gi 187371752 230 LTGFLPKWLII 240
Cdd:MTH00199 359 LAGFLSKWLIL 369
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
23-165 1.94e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.38  E-value: 1.94e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  23 PRAIEAATKYFLTQAAASALVLF-SSMTNAWFTGQwdiTQL--------THPTSCLILT-----SAIAMKLGLVPFHFWF 88
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  89 PEVLQGSPLTTGLLLSTLMKLP----PITLLYMTSPSLNP---TLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLG 161
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 187371752 162 WMAI 165
Cdd:PRK02504 314 FVMI 317
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-240 2.41e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.58  E-value: 2.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFSSMTNAWFTGQ----WDITQLTHPTS-- 67
Cdd:MTH00198 214 YLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlGTILSATLETTni 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  68 --------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLymTSPSLNPTLLTALAILSTALGG 139
Cdd:MTH00198 294 elrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAIISLVVGA 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 140 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTATVFLALNTI------------------------ 195
Cdd:MTH00198 372 FGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTYLVSALASFTVictleefgtrtptsrqrdgsfgny 451

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 187371752 196 -KVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:MTH00198 452 nLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 24-236 5.62e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.18  E-value: 5.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  24 RAIEAATKYFLTQAAASALVL--FSsmtnaWFTGQ-------WDI------TQLTHPTSCLI----LTSAIAMKLGLVPF 84
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  85 HFWFPEVLQGSPLTTGLLLSTLMKLPPITL----LYMTSPSLNP---TLLTALAILSTALGGWMGLNQTQIRKILAFSSI 157
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 158 SHLGWMAIIII-------YNPKLTLLNFYLytmmtatvFLALNTIKVLKLSTLMTA----------WTKTPSLNAMLLLT 220
Cdd:CHL00049 314 GQIGYVIIGIIvgdsndgYASMITYMLFYI--------FMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALC 385

                        250
                 ....*....|....*.
gi 187371752 221 LLSLAGLPPLTGFLPK 236
Cdd:CHL00049 386 LLSLGGIPPLAGFFGK 401
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-252 1.77e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 64.40  E-value: 1.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTH----------PTSCLILT 72
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  73 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLM-KLPP------ITLLYMTSPSLNP-TLLTALAILSTALGGWMGLN 144
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLLLVLGLLTMLVGALGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 145 QTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----TMMTATVFLALNTIKVL----KLSTLMTAWTKTPSLNAM 216
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrDLDKLGGLGKRMPLTAAA 372

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 187371752 217 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 252
Cdd:COG0651  373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-239 2.91e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.64  E-value: 2.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   6 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWFTGQWDITQLTHPTSCL-ILTSA 74
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  75 IAMKLGLVPFHFWFPEVLQGSPLTTGLLlstlMKLPPITLLY--------MTSPSLNPT----LLTALAILSTALGGWMG 142
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPSSISAM----LLVIKQAGLYalarvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAMA 305

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 143 LNQTQIRKILAFSSISHLGWM------AIIIIYNPKLT----------LLNFYLYTMMTATVFLA-------LNTIKVLK 199
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNE 385

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 187371752 200 LSTLMTAWTKTpslNAMLLLTLLSLAGLPPLTGFLPKWLI 239
Cdd:PRK08376 386 LGGLARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 22-165 3.05e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 51.62  E-value: 3.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  22 HPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQW--DITQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 91
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  92 LQGSPLTTGLLLSTLM-KLP-------PITLLYMTSPSLNPTLLtALAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 163
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ..
gi 187371752 164 AI 165
Cdd:COG1008  315 LL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 23-167 1.79e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.17  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   23 PRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQW----DITQLTHPTSC-----LILTSAIAMKLGLVPFHFWFPEV-L 92
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   93 QGSPLTTGLLLSTLMKLPP-------ITLLYMTSPSLNPtLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 165
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 187371752  166 II 167
Cdd:TIGR01972 311 GI 312
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 69-167 4.14e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 45.30  E-value: 4.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  69 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLL------YMTSPSLNPTLLTaLAILSTALGGWMG 142
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100
                 ....*....|....*....|....*
gi 187371752 143 LNQTQIRKILAFSSISHLGWMAIII 167
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 7-248 1.27e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 43.45  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   7 EINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDIT-------QLTHPTSCLI----LTSAI 75
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  76 AMKLGLVPFHFWFPEVLQGSP------------------LTTGLLLSTLMKLPPITLLYMTSPSLNpTLLTALAILSTAL 137
Cdd:PRK08668 207 VAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygFLLVLYVLPGTKLFSEFGTYRGVPLFN-YILAWLGNISIIV 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 138 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLYTMMTATVFLALNTI----KVLKLSTLMTAWTK 209
Cdd:PRK08668 286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 187371752 210 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 248
Cdd:PRK08668 366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-163 2.07e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQL-----THPTSCLILTSAIA 76
Cdd:COG1009  137 FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  77 M------KLGLVPFHFWFPEVLQGsPLttglllstlmklPPITLL----------YM---TSP--SLNPTLLTALAI--L 133
Cdd:COG1009  217 LllgafgKSAQFPLHFWLPDAMEG-PT------------PVSALLhaatmvkagvYLlarLSPlfALSPVWLTVVAIigA 283

                        170       180       190
                 ....*....|....*....|....*....|.
gi 187371752 134 STAL-GGWMGLNQTQIRKILAFSSISHLGWM 163
Cdd:COG1009  284 ITALfAALIALAQTDIKRVLAYSTVSQLGYM 314
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 264-313 2.24e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 38.39  E-value: 2.24e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 187371752  264 FFYLRLAYCTTITLPPHTTNHIKQWRINKPTN*M-IA*LTTMSLTLLPISP 313
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 3-167 5.35e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.28  E-value: 5.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   3 WMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWFTGQWDITQLTHPT---------- 66
Cdd:PRK08676 128 WIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHAsllspsvlga 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  67 SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT--------LLTALAILSTALG 138
Cdd:PRK08676 208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaaeqfsnVLIGLGIFSIAVA 287

                        170       180
                 ....*....|....*....|....*....
gi 187371752 139 GWMGLNQTQIRKILAFSSISHLGWMAIII 167
Cdd:PRK08676 288 AFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-271 7.40e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 41.02  E-value: 7.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752   6 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwFTGQWDITQL--------THPTSCLILTSAIA 76
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  77 MKLGLVPFHFWFPEVLQGSPlttglllstlmklPPITLL------------------------YMTSPSLNpTLLTALAI 132
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAP-------------PVVTALlsglvtkvavyaliriyftvfggdFRFALGLG-WLLAVLAL 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 133 LSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YTMMTATVFLALNTIKVL----KLSTLM 204
Cdd:PRK08375 280 LSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELS 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187371752 205 TAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 271
Cdd:PRK08375 360 GLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
28-163 1.90e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.68  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  28 AATKYFLTQAAASALVLFSSMTNAWFTG-------QWDITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEV-LQGSP 96
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187371752  97 LTTGLLLSTLMKLPPITLL------YMTSPSLNPTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 163
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 115-240 3.34e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 3.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 115 LYMTSPSLNpTLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----TMMTATVFL 190
Cdd:PRK12662 271 FVFTTLPFN-NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFM 349

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187371752 191 ALNTIK----VLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 240
Cdd:PRK12662 350 VSGSISyhfgTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 23-167 3.91e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 38.64  E-value: 3.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  23 PRAIEAATKYFLTQAAASALVLFSSMTNAWF----TGQWDITQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 90
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  91 VLQGSPLTTGLLLSTLM-KLPPITLLYMTSPsLNP-------TLLTALAILSTALGGWMGLNQTQIRKILAFSSISHLGW 162
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 187371752 163 MAIII 167
Cdd:PRK05846 316 VTLGI 320
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 21-236 4.00e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.04  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  21 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLTHPTS---------------CLILTSAiAMKLGLVPFH 85
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  86 FWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT-----LLTALAILSTALGGWMGLNQTQIRKILAFSSISHL 160
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 161 GWMAIIIIYN----PKLTLL--NFYLYTMMT--ATVFLALN-------TIKVLKLSTLMTawtKTPSLNAMLLLTLLSLA 225
Cdd:PRK12649 315 AYLMTMYGYTtyhePGLGVAaaTFHLLNHATfkACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 187371752 226 GLPPLTGFLPK 236
Cdd:PRK12649 392 GIPPLNGFLSK 402
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
65-241 5.74e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 5.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752  65 PTSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTLMKLPPI-------TLLYMTSPSLNPTLLTALAILSTAL 137
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371752 138 GGWMGLNQTQIRKILAFSSISHLGWM-AIIIIYNPK-LTLLNFYLYTMMT--ATVFLALNTIKVL----KLSTLMTAWTK 209
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 187371752 210 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 241
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 121-163 9.52e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 37.45  E-value: 9.52e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 187371752 121 SLNPTLLTALAILS--TAL-GGWMGLNQTQIRKILAFSSISHLGWM 163
Cdd:PRK06590 275 ELSPEALLFVAIVGavTALfAAFIGLVQTDIKRVLAYSTMSQLGYM 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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