NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|187371347|gb|ACD02550|]
View 

cytochrome b, partial (mitochondrion) [Turdus ludoviciae]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 686.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00119 355 ASILYFTILLIL 366
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 686.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00119 355 ASILYFTILLIL 366
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-332 7.77e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 373.36  E-value: 7.77e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSY-----L 75
Cdd:COG1290   43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  76 NketWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 154
Cdd:COG1290  123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 155 VIAGLTLVHLTFLHETGSNNPLGI----PADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNalGDPENFTPANPLT 230
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQ 308
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340
                 ....*....|....*....|....
gi 187371347 309 PVehPFIIIGQLASISYFTIILVL 332
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIV 379
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 3.57e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 252.67  E-value: 3.57e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLN--KE 78
Cdd:cd00284   26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  79 TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:cd00284  106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                        170
                 ....*....|....*
gi 187371347 159 LTLVHLTFLHETGSN 173
Cdd:cd00284  186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 2.63e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 227.26  E-value: 2.63e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347    1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   79 TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 187371347  159 LTLVHLTFLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 203-292 1.86e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.35  E-value: 1.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  203 LTLLVSLALFSPNALGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSM 282
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 187371347  283 TF-RPLSQILF 292
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 686.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00119 355 ASILYFTILLIL 366
CYTB MTH00100
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 631.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00100  34 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00100 114 NIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00100 194 MVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00100 274 FLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQL 353

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00100 354 ASILYFLIILIL 365
CYTB MTH00131
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 629.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00131  34 GSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00131 114 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAAT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00131 194 ILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00131 274 FLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQV 353

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00131 354 ASVLYFSLFLVL 365
CYTB MTH00074
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 605.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00074  35 GSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00074 115 NIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGAS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00074 195 IIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00074 275 FLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQA 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00074 355 ASILYFLLFIII 366
CYTB MTH00191
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 596.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00191  31 GSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00191 111 NVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00191 191 LIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWY 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00191 271 FLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQI 350

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00191 351 SSFLYFFLFLLL 362
CYTB MTH00156
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 583.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00156  24 GSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTW 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00156 104 MSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMV 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00156 184 MIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00156 264 FLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQI 343

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00156 344 LTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 569.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00145  35 GSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00145 115 NIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00145 195 VLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00145 275 FLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQV 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00145 355 FTVLYFLFFLIL 366
CYTB MTH00034
cytochrome b; Validated
 1-332 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 560.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00034  34 GSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00034 114 NIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALS 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00034 194 IIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00034 274 FLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQV 353

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00034 354 ASVLYFSLFLFF 365
CYTB MTH00016
cytochrome b; Validated
 1-332 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 533.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00016  35 GSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00016 115 NIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00016 195 MIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00016 275 FLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00016 355 FTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-332 4.10e-169

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 474.96  E-value: 4.10e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00022  33 GSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVW 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00022 113 NVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLV 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00022 193 IVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWY 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00022 273 FLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQL 352

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00022 353 LSFFYFFYFLVL 364
CYTB MTH00053
cytochrome b; Provisional
 1-332 1.09e-168

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 474.19  E-value: 1.09e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00053  35 GSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00053 115 NVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLA 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00053 195 LVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00053 275 FLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQI 354

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00053 355 ASIFYFAYFLIL 366
CYTB MTH00224
cytochrome b; Provisional
 1-331 2.07e-164

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 463.24  E-value: 2.07e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00224  35 GSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00224 115 NIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGAT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00224 195 ILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00224 275 FLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354

                        330
                 ....*....|.
gi 187371347 321 ASISYFTIILV 331
Cdd:MTH00224 355 FTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 1-332 5.76e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 373.50  E-value: 5.76e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00033  31 GSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00033 111 IVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLV 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFS--PNALGDPENFTPANPLTTPPHIKPE 238
Cdd:MTH00033 191 LAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPE 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 239 WYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPV-EHPFIII 317
Cdd:MTH00033 271 WYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLI 350

                        330
                 ....*....|....*
gi 187371347 318 GQLASISYFTIILVL 332
Cdd:MTH00033 351 GRIATIFYFGYFLVL 365
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-332 7.77e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 373.36  E-value: 7.77e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSY-----L 75
Cdd:COG1290   43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  76 NketWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 154
Cdd:COG1290  123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 155 VIAGLTLVHLTFLHETGSNNPLGI----PADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNalGDPENFTPANPLT 230
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQ 308
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340
                 ....*....|....*....|....
gi 187371347 309 PVehPFIIIGQLASISYFTIILVL 332
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIV 379
CYTB MTH00086
cytochrome b; Provisional
 1-332 9.96e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 336.14  E-value: 9.96e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00086  23 GSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVW 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00086 103 ISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLV 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFaLMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWY 240
Cdd:MTH00086 183 LFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWY 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSkqrSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00086 262 FLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQI 338

                        330
                 ....*....|..
gi 187371347 321 ASISYFTIILVL 332
Cdd:MTH00086 339 FSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 1-324 2.29e-89

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 271.47  E-value: 2.29e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  81 NIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 161 LVHLTFLHETGSNNPLGIPAD-CDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEW 239
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 240 YFLFAYAILRSIPNKLGGvLALAASVLVLFLTPllhkSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQ 319
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339


                 ....*
gi 187371347 320 LASIS 324
Cdd:MTH00046 340 LFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 3.57e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 252.67  E-value: 3.57e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLN--KE 78
Cdd:cd00284   26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  79 TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:cd00284  106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                        170
                 ....*....|....*
gi 187371347 159 LTLVHLTFLHETGSN 173
Cdd:cd00284  186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 2.63e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 227.26  E-value: 2.63e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347    1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   79 TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 187371347  159 LTLVHLTFLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 174-321 1.35e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 177.84  E-value: 1.35e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 174 NPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLALFSPNALGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPN 253
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187371347 254 KLGGVLALAASVLVLFLTPLLHKSKQRSmTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLA 321
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
225-325 7.50e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 7.50e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  225 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTW 304
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 187371347  305 VGSQPVEHPFIIIGQLASISY 325
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
55-220 8.50e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.17  E-value: 8.50e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   55 SLFFICIYLHIGRGFYYGSYLNKE--TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  133 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLTLLVSLAL 211
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 187371347  212 FSPNALGDP 220
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-176 3.14e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.91  E-value: 3.14e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKE-- 78
Cdd:PRK03735  45 GGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRel 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  79 TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 157
Cdd:PRK03735 125 NWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALA 204

                        170
                 ....*....|....*....
gi 187371347 158 GLTLVHLTFLHETGSNNPL 176
Cdd:PRK03735 205 VLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-176 8.34e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 118.28  E-value: 8.34e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347   1 GSLLGICLITQIITGLLLAMHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKE-- 78
Cdd:CHL00070  37 GGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRel 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  79 TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 157
Cdd:CHL00070 117 TWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196

                        170
                 ....*....|....*....
gi 187371347 158 GLTLVHLTFLHETGSNNPL 176
Cdd:CHL00070 197 VFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 196-292 5.34e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.79  E-value: 5.34e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 196 ILGfalMLTLLVSLALFSPNALGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLH 275
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90
                 ....*....|....*...
gi 187371347 276 K-SKQRSMTFRPLSQILF 292
Cdd:CHL00058 116 NvNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 203-306 1.20e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.20e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347 203 LTLLVSLALFSPNALGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSM 282
Cdd:COG5679   49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123

                         90       100
                 ....*....|....*....|....*
gi 187371347 283 TF-RPLSQILFwaLVANLLILtWVG 306
Cdd:COG5679  124 PFrRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 203-292 1.86e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.35  E-value: 1.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371347  203 LTLLVSLALFSPNALGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSM 282
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 187371347  283 TF-RPLSQILF 292
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH