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Conserved domains on  [gi|186882993|gb|ABB72658|]
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cytochrome b, partial (mitochondrion) [Dociostaurus maroccanus]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-203 2.58e-149

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 418.42  E-value: 2.58e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 80
Cdd:MTH00156  71 TLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  81 VQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00156 151 VQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLI 230

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00156 231 LLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-203 2.58e-149

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 418.42  E-value: 2.58e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 80
Cdd:MTH00156  71 TLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  81 VQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00156 151 VQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLI 230

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00156 231 LLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-203 7.65e-78

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 238.15  E-value: 7.65e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:COG1290   91 MHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTW 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  80 LVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIGV----NSNIEKIPFHPYFTFKDSITFVL 154
Cdd:COG1290  171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFV 250

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 186882993 155 MtsLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:COG1290  251 F--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-126 7.29e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 170.63  E-value: 7.29e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:cd00284   74 LHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGIT 153

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 186882993  80 LVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 126
Cdd:cd00284  154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-124 1.41e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 161.78  E-value: 1.41e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993    2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:pfam00033  65 VHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDT 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 186882993   80 LVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTG 124
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-203 2.58e-149

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 418.42  E-value: 2.58e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 80
Cdd:MTH00156  71 TLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  81 VQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00156 151 VQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLI 230

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00156 231 LLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00119
cytochrome b; Provisional
 2-203 2.03e-132

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 376.55  E-value: 2.03e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00119  83 LHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLV 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00119 163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLT 242

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00119 243 LALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00145
cytochrome b; Provisional
 1-203 2.61e-131

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 373.47  E-value: 2.61e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 80
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  81 VQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00191
cytochrome b; Provisional
 2-203 1.11e-129

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 368.86  E-value: 1.11e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00191  79 IHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLV 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00191 159 QWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLF 238

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00191 239 LVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00074
cytochrome b; Provisional
 2-203 1.21e-129

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 369.39  E-value: 1.21e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00074  83 IHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLV 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00074 163 QWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALAL 242

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00074 243 LSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00100
cytochrome b; Provisional
 2-203 4.38e-129

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 368.20  E-value: 4.38e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00100 162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00100 242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00131
cytochrome b; Provisional
 2-203 4.85e-128

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 365.51  E-value: 4.85e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00016
cytochrome b; Validated
 1-203 1.34e-122

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 351.67  E-value: 1.34e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 80
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  81 VQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 2-203 8.14e-116

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 334.37  E-value: 8.14e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00034  82 IHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIV 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00034 162 QWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSS 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00034 242 LALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00022
cytochrome b; Validated
 2-203 3.47e-104

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 304.70  E-value: 3.47e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00022  81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00022 161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00022 241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00224
cytochrome b; Provisional
 1-203 1.82e-103

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 303.00  E-value: 1.82e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 80
Cdd:MTH00224  82 SIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDL 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  81 VQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00224 162 VEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLS 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00224 242 LMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00053
cytochrome b; Provisional
 2-203 3.07e-101

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 297.39  E-value: 3.07e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00053  83 LHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIV 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00053 163 RWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSI 242

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00053 243 IVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-203 7.65e-78

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 238.15  E-value: 7.65e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:COG1290   91 MHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTW 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  80 LVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIGV----NSNIEKIPFHPYFTFKDSITFVL 154
Cdd:COG1290  171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFV 250

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 186882993 155 MtsLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:COG1290  251 F--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00086
cytochrome b; Provisional
 2-203 4.68e-77

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 234.83  E-value: 4.68e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00086  71 FHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIV 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTsLLIM 161
Cdd:MTH00086 151 MWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFII 229

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 186882993 162 LCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00086 230 FSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
CYTB MTH00033
cytochrome b; Provisional
 2-203 2.98e-76

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 233.68  E-value: 2.98e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00033  79 VHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIV 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIM 161
Cdd:MTH00033 159 EWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVI 238

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 186882993 162 LClINPY---MLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00033 239 IG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00046
cytochrome b; Validated
 2-203 9.18e-60

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 190.58  E-value: 9.18e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 81
Cdd:MTH00046  73 WHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVY 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993  82 QWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNI-EKIPFHPYFTFKDSITFVLMTSLLI 160
Cdd:MTH00046 153 KYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLV 232

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 186882993 161 MLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:MTH00046 233 FWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-126 7.29e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 170.63  E-value: 7.29e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:cd00284   74 LHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGIT 153

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 186882993  80 LVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 126
Cdd:cd00284  154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-124 1.41e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 161.78  E-value: 1.41e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993    2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:pfam00033  65 VHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDT 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 186882993   80 LVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTG 124
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
8-173 6.53e-49

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 157.02  E-value: 6.53e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993    8 SMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 85
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   86 GGFAVDNATLNRFFTFHF-VLPFVIAAMAAIHLFFLHQTGSNNPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIMLCL 164
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 186882993  165 INPYMLGDP 173
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 127-203 1.10e-24

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 94.25  E-value: 1.10e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 186882993 127 NPIGVNSNIEKIPFHPYFTFKDSITFVLMTSLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
PRK03735 PRK03735
cytochrome b6; Provisional
 2-129 8.79e-20

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.22  E-value: 8.79e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   2 LHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 79
Cdd:PRK03735  93 MHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDF 172

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 186882993  80 LVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPI 129
Cdd:PRK03735 173 IKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-129 6.18e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 70.13  E-value: 6.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186882993   1 TLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGT 78
Cdd:CHL00070  84 SVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGS 163

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 186882993  79 DLVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPI 129
Cdd:CHL00070 164 PLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
178-203 2.23e-11

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 57.87  E-value: 2.23e-11
                          10        20
                  ....*....|....*....|....*.
gi 186882993  178 PANPLVTPVHIQPEWYFLFAYAILRS 203
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 157-202 1.11e-04

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 40.76  E-value: 1.11e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 186882993 157 SLLIMLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILR 202
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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