NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1868371373|gb|QLF99011|]
View 

gL [Suid alphaherpesvirus 1]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA03298 super family cl14538
envelope glycoprotein L; Provisional
 86-140 1.02e-04

envelope glycoprotein L; Provisional


The actual alignment was detected with superfamily member PHA03298:

Pssm-ID: 165555  Cd Length: 167  Bit Score: 40.51  E-value: 1.02e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1868371373  86 VTSVVVKPYCSPPEVILW-ASGTAYLVNPFVAIQALAV---GEPLNEAALKELGEVAVH 140
Cdd:PHA03298   83 LLTIIFKPLCSNPEAIFWyKNGTAAKVNPYLGCRILQDaleANGLAAAKFLARGLIAEH 141
 
Name Accession Description Interval E-value
PHA03298 PHA03298
envelope glycoprotein L; Provisional
 86-140 1.02e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165555  Cd Length: 167  Bit Score: 40.51  E-value: 1.02e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1868371373  86 VTSVVVKPYCSPPEVILW-ASGTAYLVNPFVAIQALAV---GEPLNEAALKELGEVAVH 140
Cdd:PHA03298   83 LLTIIFKPLCSNPEAIFWyKNGTAAKVNPYLGCRILQDaleANGLAAAKFLARGLIAEH 141
Herpes_UL1 pfam05259
Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 ...
 77-121 2.27e-03

Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 proteins. Glycoprotein L is known to form a complex with glycoprotein H but the function of this complex is poorly understood.


Pssm-ID: 283034  Cd Length: 103  Bit Score: 35.65  E-value: 2.27e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1868371373  77 YSLPPDMN--AVTSVVVKPYCSPPEVILW--ASGTAYLVNPFVAIQALA 121
Cdd:pfam05259  32 YEAPSVINyaAIDGIFLKYHCPGPETILWdrHKQMAYWVNPFLFTAGFL 80
 
Name Accession Description Interval E-value
PHA03298 PHA03298
envelope glycoprotein L; Provisional
 86-140 1.02e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165555  Cd Length: 167  Bit Score: 40.51  E-value: 1.02e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1868371373  86 VTSVVVKPYCSPPEVILW-ASGTAYLVNPFVAIQALAV---GEPLNEAALKELGEVAVH 140
Cdd:PHA03298   83 LLTIIFKPLCSNPEAIFWyKNGTAAKVNPYLGCRILQDaleANGLAAAKFLARGLIAEH 141
PHA03303 PHA03303
envelope glycoprotein L; Provisional
 77-121 1.10e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165560  Cd Length: 159  Bit Score: 40.34  E-value: 1.10e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1868371373  77 YSLPPDMN---AVTSVVVKPYCSPPEVILWASG--TAYLVNPFVAIQALA 121
Cdd:PHA03303   58 YAAPPVPNlkeAISGFVLKSKCPIPELIIWFKDkhMAYWTNPYVMLHGLA 107
PHA03297 PHA03297
envelope glycoprotein L; Provisional
 83-121 1.80e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165554  Cd Length: 185  Bit Score: 40.01  E-value: 1.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1868371373  83 MNAVTSVVVKPYCSPPEVILWAS--GTAYLVNPFVAIQALA 121
Cdd:PHA03297   68 LNRTTGIMVKAHCNPPEAILWVDtpPKPVWVNPFAVIQGLA 108
Herpes_UL1 pfam05259
Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 ...
 77-121 2.27e-03

Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 proteins. Glycoprotein L is known to form a complex with glycoprotein H but the function of this complex is poorly understood.


Pssm-ID: 283034  Cd Length: 103  Bit Score: 35.65  E-value: 2.27e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1868371373  77 YSLPPDMN--AVTSVVVKPYCSPPEVILW--ASGTAYLVNPFVAIQALA 121
Cdd:pfam05259  32 YEAPSVINyaAIDGIFLKYHCPGPETILWdrHKQMAYWVNPFLFTAGFL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH