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Conserved domains on  [gi|1866544490|ref|WP_178099494|]
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transposase [Piscirickettsia salmonis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_5 super family cl41998
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ...
 24-124 3.19e-06

DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


The actual alignment was detected with superfamily member pfam13546:

Pssm-ID: 455343  Cd Length: 271  Bit Score: 45.03  E-value: 3.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1866544490  24 VHHQYSGNAHDVIAGIGLVNLVWygLERQHSIPIDYRVY-----------------DKDTDGKTKNDHFRDMLKLGKNRG 86
Cdd:pfam13546  97 VARQYCGVLGKPDNCQVAVSLGL--AYSVVSAPVDWRLFlpeswaddsarrlragvPDEVTHRTKWQIALDLLDRARAWG 174

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1866544490  87 MTPSAVVFDAWYSSLNNLKAA-RDLHWNWVAGLKKNRKV 124
Cdd:pfam13546 175 VPLGVVVADAGYGDAAAFRQGlRERGLHYVVRVRSDRVV 213
 
Name Accession Description Interval E-value
DDE_5 pfam13546
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ...
 24-124 3.19e-06

DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


Pssm-ID: 433296  Cd Length: 271  Bit Score: 45.03  E-value: 3.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1866544490  24 VHHQYSGNAHDVIAGIGLVNLVWygLERQHSIPIDYRVY-----------------DKDTDGKTKNDHFRDMLKLGKNRG 86
Cdd:pfam13546  97 VARQYCGVLGKPDNCQVAVSLGL--AYSVVSAPVDWRLFlpeswaddsarrlragvPDEVTHRTKWQIALDLLDRARAWG 174

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1866544490  87 MTPSAVVFDAWYSSLNNLKAA-RDLHWNWVAGLKKNRKV 124
Cdd:pfam13546 175 VPLGVVVADAGYGDAAAFRQGlRERGLHYVVRVRSDRVV 213
Srso17 COG5659
SRSO17 transposase [Mobilome: prophages, transposons];
24-130 2.15e-05

SRSO17 transposase [Mobilome: prophages, transposons];


Pssm-ID: 444378 [Multi-domain]  Cd Length: 417  Bit Score: 42.69  E-value: 2.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1866544490  24 VHHQYSGNAHDVIAGIGLVNLvWYGLERQHsIPIDYRVY-----DKDTDG------------KTKNDHFRDMLKLGKNRG 86
Cdd:COG5659   114 VARQYSGTLGKVENCQVGVFL-ALASDKGS-APVDWRLYlpeswTDDPERraaagvpdevqfRTKPELALEMIDRALAAG 191

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1866544490  87 MTPSAVVFDAWY-SSLNNLKAARDLHWNWVAGLKKNRKVNRNETL 130
Cdd:COG5659   192 VPFGWVLADAGYgDSTTFRRALEERGLPYVLAVRSNTKVWPPDPL 236
 
Name Accession Description Interval E-value
DDE_5 pfam13546
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ...
 24-124 3.19e-06

DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


Pssm-ID: 433296  Cd Length: 271  Bit Score: 45.03  E-value: 3.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1866544490  24 VHHQYSGNAHDVIAGIGLVNLVWygLERQHSIPIDYRVY-----------------DKDTDGKTKNDHFRDMLKLGKNRG 86
Cdd:pfam13546  97 VARQYCGVLGKPDNCQVAVSLGL--AYSVVSAPVDWRLFlpeswaddsarrlragvPDEVTHRTKWQIALDLLDRARAWG 174

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1866544490  87 MTPSAVVFDAWYSSLNNLKAA-RDLHWNWVAGLKKNRKV 124
Cdd:pfam13546 175 VPLGVVVADAGYGDAAAFRQGlRERGLHYVVRVRSDRVV 213
Srso17 COG5659
SRSO17 transposase [Mobilome: prophages, transposons];
24-130 2.15e-05

SRSO17 transposase [Mobilome: prophages, transposons];


Pssm-ID: 444378 [Multi-domain]  Cd Length: 417  Bit Score: 42.69  E-value: 2.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1866544490  24 VHHQYSGNAHDVIAGIGLVNLvWYGLERQHsIPIDYRVY-----DKDTDG------------KTKNDHFRDMLKLGKNRG 86
Cdd:COG5659   114 VARQYSGTLGKVENCQVGVFL-ALASDKGS-APVDWRLYlpeswTDDPERraaagvpdevqfRTKPELALEMIDRALAAG 191

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1866544490  87 MTPSAVVFDAWY-SSLNNLKAARDLHWNWVAGLKKNRKVNRNETL 130
Cdd:COG5659   192 VPFGWVLADAGYgDSTTFRRALEERGLPYVLAVRSNTKVWPPDPL 236
COG5421 COG5421
Transposase [Mobilome: prophages, transposons];
53-122 1.77e-03

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 444174 [Multi-domain]  Cd Length: 490  Bit Score: 37.26  E-value: 1.77e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1866544490  53 HSIPIDYRVYDKDT-DGKTkndhFRDML-KLGKNRGMTPSAVVFDAWYSSLNNLKAARDLHWNWVAGLKKNR 122
Cdd:COG5421   162 DGIPLAYEVFPGNTaDVKT----LKPVLeKLKKRFGLKKVILVADRGLYSEDNLALLEEAGLKFITRLPLKE 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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