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Conserved domains on  [gi|186462740|gb|ACC78732|]
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replication-like protein [Gossypium mustelinum symptomless alphasatellite]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA_helicase super family cl46641
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 181-276 8.62e-11

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


The actual alignment was detected with superfamily member pfam00910:

Pssm-ID: 459992  Cd Length: 102  Bit Score: 57.61  E-value: 8.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186462740  181 WVYGPTGgEGKSQFAKYL--------GLNKNWLYlPGGKVNDMMYMYcKKPQSNLVIDYPRCNKDFInyaflEMVKNRTV 252
Cdd:pfam00910   2 WLYGPPG-CGKSTLAKYLarallkklGLPKDSVY-SRNPDDDFWDGY-TGQPVVIIDDFGQNPDGPD-----EAELIRLV 73

                          90       100       110
                  ....*....|....*....|....*....|..
gi 186462740  253 YSYKYEPVG--------FIDPtcnVHVVVMAN 276
Cdd:pfam00910  74 SSTPYPPPMaaleekgtPFTS---KFVIVTSN 102
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 181-276 8.62e-11

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 57.61  E-value: 8.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186462740  181 WVYGPTGgEGKSQFAKYL--------GLNKNWLYlPGGKVNDMMYMYcKKPQSNLVIDYPRCNKDFInyaflEMVKNRTV 252
Cdd:pfam00910   2 WLYGPPG-CGKSTLAKYLarallkklGLPKDSVY-SRNPDDDFWDGY-TGQPVVIIDDFGQNPDGPD-----EAELIRLV 73

                          90       100       110
                  ....*....|....*....|....*....|..
gi 186462740  253 YSYKYEPVG--------FIDPtcnVHVVVMAN 276
Cdd:pfam00910  74 SSTPYPPPMaaleekgtPFTS---KFVIVTSN 102
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 181-276 8.62e-11

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 57.61  E-value: 8.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186462740  181 WVYGPTGgEGKSQFAKYL--------GLNKNWLYlPGGKVNDMMYMYcKKPQSNLVIDYPRCNKDFInyaflEMVKNRTV 252
Cdd:pfam00910   2 WLYGPPG-CGKSTLAKYLarallkklGLPKDSVY-SRNPDDDFWDGY-TGQPVVIIDDFGQNPDGPD-----EAELIRLV 73

                          90       100       110
                  ....*....|....*....|....*....|..
gi 186462740  253 YSYKYEPVG--------FIDPtcnVHVVVMAN 276
Cdd:pfam00910  74 SSTPYPPPMaaleekgtPFTS---KFVIVTSN 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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