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Conserved domains on  [gi|1864384550|ref|YP_009888719|]
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putative structural protein [Salmonella phage barely]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3990 super family cl46330
Protein of unknown function (DUF3990); A family of uncharacterized proteins found by ...
 19-143 1.40e-06

Protein of unknown function (DUF3990); A family of uncharacterized proteins found by clustering human gut metagenomic sequences.


The actual alignment was detected with superfamily member pfam18760:

Pssm-ID: 480670  Cd Length: 136  Bit Score: 44.69  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864384550  19 IVLYHGSNVEFDIFDFEKFGqtdSGTMGAGFYLTGDPEKAQIYAenavryrQSGEPVVMAFRVKAKKTLVIDSNNVSvwe 98
Cdd:pfam18760   7 LVVYHGTGADFDEFDREKSG---SGGDIWGFWFSDRKDDASDYA-------SGGKGNVYPVYLNIKNPLVVDDPILK--- 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1864384550  99 nkmrelgiKPGKIHDNVKELINKGFDSIASMSAN--------------NVEEMVVFKPG 143
Cdd:pfam18760  74 --------EAYGYGIIFKRFGNGGFDTRERLEADmegydgiiaekeddGDTEVVVFEPN 124
 
Name Accession Description Interval E-value
ART-PolyVal pfam18760
ADP-Ribosyltransferase in polyvalent proteins; A family of ADP-Ribosyltransferases found in ...
 19-143 1.40e-06

ADP-Ribosyltransferase in polyvalent proteins; A family of ADP-Ribosyltransferases found in polyvalent proteins of phages and conjugative elements. These are in turn related to the Tox-ART-HYD2 group of ADP-Ribosyltransferases that are seen in polymorphic toxin systems and in toxin-antitoxin systems. These are predicted to modify host proteins.


Pssm-ID: 408531  Cd Length: 136  Bit Score: 44.69  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864384550  19 IVLYHGSNVEFDIFDFEKFGqtdSGTMGAGFYLTGDPEKAQIYAenavryrQSGEPVVMAFRVKAKKTLVIDSNNVSvwe 98
Cdd:pfam18760   7 LVVYHGTGADFDEFDREKSG---SGGDIWGFWFSDRKDDASDYA-------SGGKGNVYPVYLNIKNPLVVDDPILK--- 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1864384550  99 nkmrelgiKPGKIHDNVKELINKGFDSIASMSAN--------------NVEEMVVFKPG 143
Cdd:pfam18760  74 --------EAYGYGIIFKRFGNGGFDTRERLEADmegydgiiaekeddGDTEVVVFEPN 124
 
Name Accession Description Interval E-value
ART-PolyVal pfam18760
ADP-Ribosyltransferase in polyvalent proteins; A family of ADP-Ribosyltransferases found in ...
 19-143 1.40e-06

ADP-Ribosyltransferase in polyvalent proteins; A family of ADP-Ribosyltransferases found in polyvalent proteins of phages and conjugative elements. These are in turn related to the Tox-ART-HYD2 group of ADP-Ribosyltransferases that are seen in polymorphic toxin systems and in toxin-antitoxin systems. These are predicted to modify host proteins.


Pssm-ID: 408531  Cd Length: 136  Bit Score: 44.69  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864384550  19 IVLYHGSNVEFDIFDFEKFGqtdSGTMGAGFYLTGDPEKAQIYAenavryrQSGEPVVMAFRVKAKKTLVIDSNNVSvwe 98
Cdd:pfam18760   7 LVVYHGTGADFDEFDREKSG---SGGDIWGFWFSDRKDDASDYA-------SGGKGNVYPVYLNIKNPLVVDDPILK--- 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1864384550  99 nkmrelgiKPGKIHDNVKELINKGFDSIASMSAN--------------NVEEMVVFKPG 143
Cdd:pfam18760  74 --------EAYGYGIIFKRFGNGGFDTRERLEADmegydgiiaekeddGDTEVVVFEPN 124
DUF3990 pfam13151
Protein of unknown function (DUF3990); A family of uncharacterized proteins found by ...
 20-76 5.34e-05

Protein of unknown function (DUF3990); A family of uncharacterized proteins found by clustering human gut metagenomic sequences.


Pssm-ID: 463791  Cd Length: 151  Bit Score: 40.62  E-value: 5.34e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1864384550  20 VLYHGSNVEFDIFDFEK------FGQtdsgtmgaGFYLTGDPEKAQIYAEnAVRYRQSGEPVV 76
Cdd:pfam13151   1 ILYHGSNVIVEKPDIGKsrrykdFGK--------GFYLTEIREQAKRWAC-RKSRRRGGTPIV 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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