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Conserved domains on  [gi|18643242|gb|AAL76252|]
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NADH dehydrogenase subunit 6, partial (mitochondrion) [Gracula religiosa religiosa]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-75 4.41e-22

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 83.64  E-value: 4.41e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAA 75
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-75 4.41e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 83.64  E-value: 4.41e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAA 75
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-73 6.50e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 40.95  E-value: 6.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18643242    17 LAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSL 73
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIML 57
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 7-73 9.20e-03

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 32.78  E-value: 9.20e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18643242   7 FLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSL 73
Cdd:COG0839   7 IFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVML 73
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-75 4.41e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 83.64  E-value: 4.41e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAA 75
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-75 2.28e-20

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 79.12  E-value: 2.28e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAA 75
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-75 8.13e-20

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 77.87  E-value: 8.13e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAA 75
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-75 3.17e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 58.27  E-value: 3.17e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMAT 76
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-75 5.23e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 57.69  E-value: 5.23e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18643242    1 MMEFVMFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAA 75
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 10-75 1.26e-09

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 51.06  E-value: 1.26e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18643242   10 LCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSLAA 75
Cdd:MTH00045   8 ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSA 73
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-73 6.50e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 40.95  E-value: 6.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18643242    17 LAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSL 73
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIML 57
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 7-73 1.25e-04

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 38.17  E-value: 1.25e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18643242    7 FLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSL 73
Cdd:MTH00021   1 FFSLGIIGSGIMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIML 67
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 7-73 9.20e-03

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 32.78  E-value: 9.20e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18643242   7 FLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVSL 73
Cdd:COG0839   7 IFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVML 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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