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Conserved domains on  [gi|1863356417|ref|XP_035039729|]
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armadillo repeat protein deleted in velo-cardio-facial syndrome homolog isoform X3 [Hippoglossus stenolepis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 352-392 6.55e-10

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 55.13  E-value: 6.55e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1863356417  352 NDRIKQDVRQLNGVPILVELLDHPKPEVHRKACGALRNISF 392
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 635-674 4.86e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 46.65  E-value: 4.86e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1863356417  635 SSYIRATVRKEKGLPILVELLRSDVDKVVRAVAIALRNLA 674
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 395-436 1.62e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.62e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1863356417 395 DHNNKMAIKSCDGIPALVRLLRKTSSmEVKELVTGTLWNLSS 436
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDE-EVQEEAAWALSNLAA 41
PRK10856 super family cl35960
cytoskeleton protein RodZ;
44-147 3.30e-04

cytoskeleton protein RodZ;


The actual alignment was detected with superfamily member PRK10856:

Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.86  E-value: 3.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  44 SVVTSTNESSLETDTPHQTDTEESKAVEQEGEQALSESQESSDTQlenfqtspdltstpvvkDNAPAEPSTPGANTEPTE 123
Cdd:PRK10856  161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ-----------------QNAVVAPSQANVDTAATP 223

                          90       100
                  ....*....|....*....|....
gi 1863356417 124 SATPIATTGGAATAPPQPQAVLPP 147
Cdd:PRK10856  224 APAAPATPDGAAPLPTDQAGVSTP 247
 
Name Accession Description Interval E-value
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 352-392 6.55e-10

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 55.13  E-value: 6.55e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1863356417  352 NDRIKQDVRQLNGVPILVELLDHPKPEVHRKACGALRNISF 392
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 352-391 1.57e-09

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 54.00  E-value: 1.57e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1863356417 352 NDRIKQDVRQLNGVPILVELLDHPKPEVHRKACGALRNIS 391
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 635-674 4.86e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 46.65  E-value: 4.86e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1863356417  635 SSYIRATVRKEKGLPILVELLRSDVDKVVRAVAIALRNLA 674
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 395-436 1.62e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.62e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1863356417 395 DHNNKMAIKSCDGIPALVRLLRKTSSmEVKELVTGTLWNLSS 436
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDE-EVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 395-436 6.90e-05

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 40.88  E-value: 6.90e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1863356417  395 DHNNKMAIKSCDGIPALVRLLrKTSSMEVKELVTGTLWNLSS 436
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 639-675 2.27e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 39.36  E-value: 2.27e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1863356417 639 RATVRKEKGLPILVELLRSDVDKVVRAVAIALRNLAM 675
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PRK10856 PRK10856
cytoskeleton protein RodZ;
44-147 3.30e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.86  E-value: 3.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  44 SVVTSTNESSLETDTPHQTDTEESKAVEQEGEQALSESQESSDTQlenfqtspdltstpvvkDNAPAEPSTPGANTEPTE 123
Cdd:PRK10856  161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ-----------------QNAVVAPSQANVDTAATP 223

                          90       100
                  ....*....|....*....|....
gi 1863356417 124 SATPIATTGGAATAPPQPQAVLPP 147
Cdd:PRK10856  224 APAAPATPDGAAPLPTDQAGVSTP 247
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 327-436 4.36e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 44.32  E-value: 4.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  327 ISMLSHPMDPVKSNAAAYLQHLCYEND-RIKQdvrQLNG-VPILVELLDHPKPEVHRKACGALRNISFG--KDHNNkMAI 402
Cdd:PLN03200    64 VSLLRSGTLGAKVNAAAVLGVLCKEEDlRVKV---LLGGcIPPLLSLLKSGSAEAQKAAAEAIYAVSSGglSDHVG-SKI 139

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1863356417  403 KSCDGI-PALVRLLRKTSSME--VKELVTGTLWNLSS 436
Cdd:PLN03200   140 FSTEGVvPSLWDQLQPGNKQDkvVEGLLTGALRNLCG 176
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
2-159 2.06e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 41.57  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417   2 PAEVKESSEGPPPplslaQEAKEPTLDNPSATDEldTPTSIASVVTSTNESSLETDTPHQTDTEESKAVEQEGEQALSES 81
Cdd:pfam05539 169 KTAVTTSKTTSWP-----TEVSHPTYPSQVTPQS--QPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQR 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  82 QESSDTQLENFQTSPDLTSTPVVK--DNAPAEPSTPGANTEPTESATPIATT----GGAATAPPQPQAVLPPGEPQSVNP 155
Cdd:pfam05539 242 GPSGSPQHPPSTTSQDQSTTGDGQehTQRRKTPPATSNRRSPHSTATPPPTTkrqeTGRPTPRPTATTQSGSSPPHSSPP 321


                  ....
gi 1863356417 156 DSQS 159
Cdd:pfam05539 322 GVQA 325
 
Name Accession Description Interval E-value
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 352-392 6.55e-10

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 55.13  E-value: 6.55e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1863356417  352 NDRIKQDVRQLNGVPILVELLDHPKPEVHRKACGALRNISF 392
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 352-391 1.57e-09

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 54.00  E-value: 1.57e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1863356417 352 NDRIKQDVRQLNGVPILVELLDHPKPEVHRKACGALRNIS 391
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 635-674 4.86e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 46.65  E-value: 4.86e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1863356417  635 SSYIRATVRKEKGLPILVELLRSDVDKVVRAVAIALRNLA 674
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 395-436 1.62e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.62e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1863356417 395 DHNNKMAIKSCDGIPALVRLLRKTSSmEVKELVTGTLWNLSS 436
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDE-EVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 395-436 6.90e-05

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 40.88  E-value: 6.90e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1863356417  395 DHNNKMAIKSCDGIPALVRLLrKTSSMEVKELVTGTLWNLSS 436
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 639-675 2.27e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 39.36  E-value: 2.27e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1863356417 639 RATVRKEKGLPILVELLRSDVDKVVRAVAIALRNLAM 675
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PRK10856 PRK10856
cytoskeleton protein RodZ;
44-147 3.30e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.86  E-value: 3.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  44 SVVTSTNESSLETDTPHQTDTEESKAVEQEGEQALSESQESSDTQlenfqtspdltstpvvkDNAPAEPSTPGANTEPTE 123
Cdd:PRK10856  161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ-----------------QNAVVAPSQANVDTAATP 223

                          90       100
                  ....*....|....*....|....
gi 1863356417 124 SATPIATTGGAATAPPQPQAVLPP 147
Cdd:PRK10856  224 APAAPATPDGAAPLPTDQAGVSTP 247
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 327-436 4.36e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 44.32  E-value: 4.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  327 ISMLSHPMDPVKSNAAAYLQHLCYEND-RIKQdvrQLNG-VPILVELLDHPKPEVHRKACGALRNISFG--KDHNNkMAI 402
Cdd:PLN03200    64 VSLLRSGTLGAKVNAAAVLGVLCKEEDlRVKV---LLGGcIPPLLSLLKSGSAEAQKAAAEAIYAVSSGglSDHVG-SKI 139

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1863356417  403 KSCDGI-PALVRLLRKTSSME--VKELVTGTLWNLSS 436
Cdd:PLN03200   140 FSTEGVvPSLWDQLQPGNKQDkvVEGLLTGALRNLCG 176
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 2-146 9.17e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.99  E-value: 9.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417   2 PAEVKESSEGPPPPLSLAQEAKEPTLDNPSATDELDTPTSIASVVTSTNessletDTPHQTDTEESKAVEQEGEQALSES 81
Cdd:PLN03209  427 PAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVP------DTAPATAATDAAAPPPANMRPLSPY 500

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1863356417  82 QESSDTQlenfqtsPDLTSTPVVKDNAPAEPSTPGANTePTESATPIATTGGAATAPPQPQAVLP 146
Cdd:PLN03209  501 AVYDDLK-------PPTSPSPAAPVGKVAPSSTNEVVK-VGNSAPPTALADEQHHAQPKPRPLSP 557
Arm_2 pfam04826
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 319-408 1.99e-03

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 40.47  E-value: 1.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417 319 RDPNLHEVISMlshpmdpVKSNAAAYlqhlcyendRIKQD-VRQLNGVPILVELLDHPKPEVHRKACGALRNISF----- 392
Cdd:pfam04826  17 EDPFIHEIALI-------TLGNSAAY---------PFNQDiIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMnvenq 80

                          90
                  ....*....|....*...
gi 1863356417 393 --GKDHNNKMaiksCDGI 408
Cdd:pfam04826  81 kkIKVYVNQV----CKDI 94
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
2-159 2.06e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 41.57  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417   2 PAEVKESSEGPPPplslaQEAKEPTLDNPSATDEldTPTSIASVVTSTNESSLETDTPHQTDTEESKAVEQEGEQALSES 81
Cdd:pfam05539 169 KTAVTTSKTTSWP-----TEVSHPTYPSQVTPQS--QPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQR 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  82 QESSDTQLENFQTSPDLTSTPVVK--DNAPAEPSTPGANTEPTESATPIATT----GGAATAPPQPQAVLPPGEPQSVNP 155
Cdd:pfam05539 242 GPSGSPQHPPSTTSQDQSTTGDGQehTQRRKTPPATSNRRSPHSTATPPPTTkrqeTGRPTPRPTATTQSGSSPPHSSPP 321


                  ....
gi 1863356417 156 DSQS 159
Cdd:pfam05539 322 GVQA 325
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 344-437 2.62e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 41.63  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  344 YLQHLCYENDRIKQDVRQLNGVPILVELLDHPKpEVHRKACGALRNISFGKDHNNKMAIKSCDGIPALVRLLrKTSSMEV 423
Cdd:PLN03200   427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL-ETGSQKA 504

                           90
                   ....*....|....
gi 1863356417  424 KELVTGTLWNLSSH 437
Cdd:PLN03200   505 KEDSATVLWNLCCH 518
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
93-189 5.25e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 5.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863356417  93 QTSPDLTSTPVVKDNAPAEPSTPGANTEPTESATPIATTGGAATAPPQPQAVLPPGEPQSVNPDSQSRVYTLPDAYRGIG 172
Cdd:PRK14971  377 QHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK 456

                          90
                  ....*....|....*..
gi 1863356417 173 GDMCAGYGSLSRATLHG 189
Cdd:PRK14971  457 KIPVSKVSSLGPSTLRP 473
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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