|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-316 |
6.47e-69 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 217.77 E-value: 6.47e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHlsdMTLLL 80
Cdd:MTH00160 8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM---LNLML 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 81 NQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNtFTTLVIISSIIIGSLGGLN 160
Cdd:MTH00160 85 FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 161 QTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLI-NLNPSMKFCLFFLLLSL 239
Cdd:MTH00160 164 QTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSL 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751415 240 GGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFLFAYQEAKWIEFTTYSLNTYLSLMITT 316
Cdd:MTH00160 244 GGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSF 320
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
17-274 |
2.76e-24 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 99.70 E-value: 2.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 17 SLSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLL--------------N 81
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelskaltgglnssG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 82 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFMLI-------SYVIVMNTFTTLVIISSIII 153
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 154 GSLGGLNQTSLRKLMAYSSINHLGWMMAALLTGENM----WSFYFSIYMFLSTSIIFLFHSFQL-----FHINQNF-LIN 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtRNIRDYGgLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1861751415 224 LNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITT 274
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
10-316 |
3.50e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 78.84 E-value: 3.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 10 GTLISISSLSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVILM-------HLSDMTLLLN 81
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 82 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSIII 153
Cdd:TIGR01770 194 NGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGFSEAWQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 154 GSLGG---------LNQTSLRKLMAYSSINHLGWMMAALLTG--ENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNF-- 220
Cdd:TIGR01770 274 IIAFLsmlignfgaLAQKKVKRLLAYSSISHVGYILIGLLAGtlEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEWie 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 221 -------LINLNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFLfaY 293
Cdd:TIGR01770 354 yisdfagLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF--D 431
|
330 340
....*....|....*....|...
gi 1861751415 294 QEAKWIEFTTYSLNTYLSLMITT 316
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISA 454
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-290 |
7.07e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.85 E-value: 7.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTltsGTLISISSLSWFGAWMGLEINLLSFIPL-MTNTKNTLSTEASLKYFLIQALASSILLFSVIL-------MH 72
Cdd:COG1007 108 LLFATL---GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 73 LSDMTLLLNQNLFLTLISSSLLL--------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFmlisyVIVMNTFTT 144
Cdd:COG1007 185 LAGIAAALAAGGANSPLLLLGLVlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAF-----AALLRLLVE 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 145 LVIISSIIIGSLGGL--------------NQTSLRKLMAYSSINHLGWMMAALLTGENMWS----FYFSIYMFLST-SII 205
Cdd:COG1007 260 AFPGLAADWQLLLAVlavlsmtvgnlaalAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLgAFA 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 206 FLFHSFQLFHINQNF-----LINLNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFY 280
Cdd:COG1007 340 VILLLSRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
330
....*....|
gi 1861751415 281 YLRLTFAAFL 290
Cdd:COG1007 420 YLRVVKAMYF 429
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-316 |
6.47e-69 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 217.77 E-value: 6.47e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHlsdMTLLL 80
Cdd:MTH00160 8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM---LNLML 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 81 NQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNtFTTLVIISSIIIGSLGGLN 160
Cdd:MTH00160 85 FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 161 QTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLI-NLNPSMKFCLFFLLLSL 239
Cdd:MTH00160 164 QTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSL 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751415 240 GGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFLFAYQEAKWIEFTTYSLNTYLSLMITT 316
Cdd:MTH00160 244 GGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSF 320
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-290 |
1.19e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 171.18 E-value: 1.19e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVI--LMHLSDMTL 78
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 79 L-LNQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFML---ISYVIVMNTFTTlVIISSIIIG 154
Cdd:MTH00105 87 TkLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIlyqISPSINPNLLLT-LAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 155 SLGGLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQ-NFLINLNPSMKFCLF 233
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSlSHTWNKTPLMTSLIL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751415 234 FLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFL 290
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSL 302
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-286 |
4.98e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 166.92 E-value: 4.98e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLS----DM 76
Cdd:MTH00112 7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNtgqwDI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 77 TlLLNQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLIsYVIVMNTFTTLVIISSIIIGSL 156
Cdd:MTH00112 87 T-QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 157 ---GGLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLI-NLNPSMKFCL 232
Cdd:MTH00112 165 ggwGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSwTKSPTLNTTL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1861751415 233 FFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTF 286
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTY 298
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-287 |
6.33e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 166.63 E-value: 6.33e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLtsGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLSD---MT 77
Cdd:MTH00070 9 LLSSLAL--GTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTgewTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 78 LLLNQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLIsyvIVMNTFTTLVIISSIIIGSLG 157
Cdd:MTH00070 87 MNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQISHLLNSNLLIIMGLLSTL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 158 G-----LNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLINL-NPSMKFC 231
Cdd:MTH00070 164 IggwggLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSkNPTLTSM 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1861751415 232 LFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFA 287
Cdd:MTH00070 244 MMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-286 |
8.02e-49 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 166.26 E-value: 8.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLL 80
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 81 NQNLFLTLISSSLL---LKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVI--VMNTFTTLVIISSIIIGS 155
Cdd:MTH00041 87 NGPLNTLSSIIITLalaLKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnlLNSNILILCGILSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 156 LGGLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHI-NQNFLINLNPSMKFCLFF 234
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLsHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1861751415 235 LLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTF 286
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISF 298
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-290 |
1.72e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 159.67 E-value: 1.72e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLL 80
Cdd:MTH00144 7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 81 nqnlfLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSIIIGSL---G 157
Cdd:MTH00144 87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSALVgsiG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 158 GLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLINLNPSMKFCLFFLLL 237
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLL 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1861751415 238 SLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFL 290
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-289 |
9.39e-44 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 152.63 E-value: 9.39e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHlsdMTLLL 80
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW---SFPSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 81 NQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMN--TFTTLVIISSIIIGSLGG 158
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 159 LNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLI-NLNPSMKFCLFFLLL 237
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKIsSMSQTTSMSLFIMLL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1861751415 238 SLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAF 289
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM 297
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-291 |
1.44e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 152.43 E-value: 1.44e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLL 80
Cdd:MTH00200 7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 81 NQ---NLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLIS--YVIVMNTFTTLVIISSIIIGS 155
Cdd:MTH00200 87 SEmlgPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 156 LGGLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQ-NFLINLNPSMKFCLFF 234
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSlSSSKTKNPILSMLLGL 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751415 235 LLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFLF 291
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLT 303
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-290 |
1.85e-41 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 146.87 E-value: 1.85e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTLtsGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVI----LMHLSDM 76
Cdd:MTH00135 9 LLFSLGL--GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnawLTGQWDI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 77 TLLLNQnLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMN-TFTTLVIISSIIIGS 155
Cdd:MTH00135 87 QQMSHP-LPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNpTLLITLGLTSTLVGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 156 LGGLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIiflfhsFQLFHINQNFLINL-------NPSM 228
Cdd:MTH00135 166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSA------FLTFKLNSSTKINTlatswtkAPAL 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1861751415 229 KFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFL 290
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTL 301
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
2-293 |
4.42e-41 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 145.20 E-value: 4.42e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 2 LFSLTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLLn 81
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 82 qnlFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSIIIGSLGGLNQ 161
Cdd:MTH00197 81 ---SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 162 TSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNFLINLNPSM-KFCLFFLLLSLG 240
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSnLVFLGLSFLSLG 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1861751415 241 GLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFLFAY 293
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSN 290
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
17-274 |
2.76e-24 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 99.70 E-value: 2.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 17 SLSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLL--------------N 81
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelskaltgglnssG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 82 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFMLI-------SYVIVMNTFTTLVIISSIII 153
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 154 GSLGGLNQTSLRKLMAYSSINHLGWMMAALLTGENM----WSFYFSIYMFLSTSIIFLFHSFQL-----FHINQNF-LIN 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtRNIRDYGgLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1861751415 224 LNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITT 274
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
5-284 |
2.26e-19 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 88.15 E-value: 2.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 5 LTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTL-STEASLKYFLIQALASSILLFSVILMH-------LSDM 76
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAySTEAGLKYFVLGAVSSGLFLFGCALLYgltgetsIQGI 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 77 TLLLNQNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSIIIGSL 156
Cdd:MTH00199 184 NSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAI 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 157 GGLNQTSLRKLMAYSSINHLGWMMAALLTGEN---MWSF-YFSIYMFLSTSIIFLFHSFQLfhiNQNFLINL------NP 226
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiQASLiYMIIYVIMSICSFSIILSLKL---TKGLIVEVsglsrkNP 340
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1861751415 227 SMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRL 284
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
10-284 |
9.42e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 79.69 E-value: 9.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 10 GTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTL-STEASLKYFLIQALASSILLFSVILM-------HLSDMTLLLN 81
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCALLcgttgglHLSYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 82 QNLFLTLISSSL---------LLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSII 152
Cdd:MTH00196 85 SGQSFSSVSVPIgylliivalLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 153 IGSLGGLNQTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYMFLS-TSIIFLFHSFQLFHINQNFLINL------N 225
Cdd:MTH00196 165 VGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYiIMSICVFSIILALNVYKNLIIEFsglsrrL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1861751415 226 PSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRL 284
Cdd:MTH00196 245 PILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
2-290 |
1.72e-16 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 79.48 E-value: 1.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 2 LFSLTLTS--GTLISISSLSWFGAWMGLEI-NLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVIL-------M 71
Cdd:PRK05777 105 FYLLVLFAllGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 72 HLSDMTLLLNQNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFML---ISYVIVMN 140
Cdd:PRK05777 185 SFAGIAKALADGSGNSLLLLFglvfllvgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVllrLLVVAFGG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 141 TFTTLVIISSIIIGSLGGL------NQTSLRKLMAYSSINHLGWMMAALLTG-----ENMWsFYFSIYMFLST---SIIF 206
Cdd:PRK05777 265 LSEDWQQVLAIIAIASMLVgnlaalSQTNIKRLLAYSSIAHAGYLLVGLAAGtaegySAVL-FYLLAYLFMTLgafGVIS 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 207 L-----FHSFQLFHINQnfLINLNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYY 281
Cdd:PRK05777 344 LlrrkgGEAESISDFAG--LSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421
|
....*....
gi 1861751415 282 LRLTFAAFL 290
Cdd:PRK05777 422 LRVIKLMYF 430
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
10-316 |
3.50e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 78.84 E-value: 3.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 10 GTLISISSLSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVILM-------HLSDMTLLLN 81
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 82 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSIII 153
Cdd:TIGR01770 194 NGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGFSEAWQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 154 GSLGG---------LNQTSLRKLMAYSSINHLGWMMAALLTG--ENMWSFYFSIYMFLSTSIIFLFHSFQLFHINQNF-- 220
Cdd:TIGR01770 274 IIAFLsmlignfgaLAQKKVKRLLAYSSISHVGYILIGLLAGtlEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEWie 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 221 -------LINLNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFLfaY 293
Cdd:TIGR01770 354 yisdfagLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF--D 431
|
330 340
....*....|....*....|...
gi 1861751415 294 QEAKWIEFTTYSLNTYLSLMITT 316
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISA 454
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-290 |
7.07e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.85 E-value: 7.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 1 LLFSLTltsGTLISISSLSWFGAWMGLEINLLSFIPL-MTNTKNTLSTEASLKYFLIQALASSILLFSVIL-------MH 72
Cdd:COG1007 108 LLFATL---GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 73 LSDMTLLLNQNLFLTLISSSLLL--------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFmlisyVIVMNTFTT 144
Cdd:COG1007 185 LAGIAAALAAGGANSPLLLLGLVlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAF-----AALLRLLVE 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 145 LVIISSIIIGSLGGL--------------NQTSLRKLMAYSSINHLGWMMAALLTGENMWS----FYFSIYMFLST-SII 205
Cdd:COG1007 260 AFPGLAADWQLLLAVlavlsmtvgnlaalAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLgAFA 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 206 FLFHSFQLFHINQNF-----LINLNPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFY 280
Cdd:COG1007 340 VILLLSRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
330
....*....|
gi 1861751415 281 YLRLTFAAFL 290
Cdd:COG1007 420 YLRVVKAMYF 429
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
24-284 |
9.34e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 55.92 E-value: 9.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 24 WMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILM----------HLSDMTLLLNQNLFLTLISSSL 93
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnmaDLAARLAELDPGLLLAAFALLL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 94 L---LKMGAAPFHFWFPGTM-EGLSWMNCLI--LMTwqKIAPFMLISYVIVMNTFTTLVIISSIIIGS---------LGG 158
Cdd:COG0651 213 VgfgIKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILRVLTLLFGADPALFLGTLLLVLglltmlvgaLGA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 159 LNQTSLRKLMAYSSINHLGWMMAALLTGeNMWSFYFSIY-----------MFLST-SIIFLFHSFQLFHINQnfLINLNP 226
Cdd:COG0651 291 LAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFhllnhalakalLFLAAgAIERATGTRDLDKLGG--LGKRMP 367
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1861751415 227 SMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRL 284
Cdd:COG0651 368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
10-284 |
4.23e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 54.48 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 10 GTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNTLST---------EASLKYFLIQALASSILLF-------------- 66
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcalyfgftgnegm 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 67 --SVILMHLSDMTLLLNQNLF-LTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVIVMNTFT 143
Cdd:MTH00198 280 lgTILSATLETTNIELRQGSLgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 144 TLVIISSIIIGSLGGLNQTSLRKLMAYSSINHLGWMMAALLTG-----ENMWSfYFSIYM---FLSTSIIFLFHSFQL-- 213
Cdd:MTH00198 360 LSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWT-YAVTYLvsaLASFTVICTLEEFGTrt 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 214 -----------FHINQNFLINL------NPSMKFCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMN-------YLFLSVV 269
Cdd:MTH00198 439 ptsrqrdgsfgNYNLVRRLVDLtilsrgQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAfssslsiYYLVALF 518
|
330
....*....|....*
gi 1861751415 270 MIITTLLTLFYYLRL 284
Cdd:MTH00198 519 AIICTCISAFYYIRI 533
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-290 |
1.30e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 46.63 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 5 LTLTSGTLISISSLSWFGAWMGLEINLLSFIPLMTNTKNT-LSTEASLKYFLIQALASSILLFSVILMH-------LSDM 76
Cdd:PRK08376 128 LLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTwEAIEAGIKYMFVGSLASSMVLLGIALLYgqygtlnMAYL 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 77 TLLLNQNLFLT------LISSSLLLKMGAAPFHFWFP-GTMEGLSWMNCLILMTWQ----KIAPFMLISYVIVMNTFTTL 145
Cdd:PRK08376 208 AVKMSENPTVVakialaLFIAGLAMKSGAVPVHMWLPdAYPAAPSSISAMLLVIKQaglyALARVLFSIYGPAINLATVG 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 146 VIISSIIIGSLGGLN-----QTSLRKLMAYSSINHLGWMMAAL-------------------LTGENMWSFYFSIY---M 198
Cdd:PRK08376 288 WVIIILGCLTMFVGVamavvQKDVKRLLAYHSVSQIGYMLLGLgvglaalgdpamasygeiaLAGGIYHIVNHALYkalL 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 199 FLSTSIIFlfhsFQLFHINQNFLINLNPSMKFCLFFLL---LSLGGLPPFLGFLPKWLVIQALTSMNYLfLSVVMIITTL 275
Cdd:PRK08376 368 FLTAGAVI----YETGTRNLNELGGLARTMPKTTIAFLigaAAIVGLPPFNGFASKWLIYESSALFNPI-LGVIAMIGSV 442
|
330
....*....|....*
gi 1861751415 276 LTLFYYLRLTFAAFL 290
Cdd:PRK08376 443 LTLASFVKVFHTAFF 457
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
27-289 |
1.80e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 46.03 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 27 LEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVILMHLSDMTLLLNQ-----------NLFLTLISSSLLL 95
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADlagalaenptvVTAFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 96 KMGAAPFHFWFPGTM-EGLSWMNCLILMTWQKIAPFMLISYVIVMNTFTTLVIISSIIIGSLGGL-----------NQTS 163
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLALlsmlvgslaalGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 164 LRKLMAYSSINHLGWMMA--ALLTGENMWS--FY------FSIYMFLSTSIIFL-FHSFQLFHINQnfLINLNPSMKFCL 232
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLglALLTPLALAAglLHllhhalMKGALFLAAGAIEVtYGTRRLSELSG--LGRRMPLTAAAF 372
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751415 233 FFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAF 289
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
161-290 |
3.66e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 44.96 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 161 QTSLRKLMAYSSINHLGWMMAALLTGENMWSFYFSIYM----------FLSTSIIFlfHSFQLFHINQ-NFLINLNPSMK 229
Cdd:PRK12667 316 QKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksllFLASGVFI--HAAGTRDIDElAGLGRKMPIAS 393
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1861751415 230 FCLFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFL 290
Cdd:PRK12667 394 FAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
46-283 |
5.81e-05 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 44.66 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 46 STEASLKYFLIQALASSILLFSVILM--------HLSDMTLLLNQNLFLTLISSSLLL------KMGAAPFHFWFPGTME 111
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLyglsggstQLSAIALALITSPSLGLALALVFViagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 112 GLSWMNCLILMTWQKIAPFMLIS--YVIVMNTFT-------TLVIISSIIIGSLGGLNQTSLRKLMAYSSINHLGWMMAA 182
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALAIrlLVTAFPSFDeqwkllfTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 183 LLTG-ENMWS---FYFSIYMFLSTSIiflFHSFQLFHINQNF--------LINLNPSMKFCLFFLLLSLGGLPPFLGFLP 250
Cdd:PRK02504 319 LVAGtEAGYAsmvFYLLAYLFMNLGA---FACVILFSLRTGTdqisdyagLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395
|
250 260 270
....*....|....*....|....*....|....
gi 1861751415 251 K-WLVIQALTSMNYLfLSVVMIITTLLTLFYYLR 283
Cdd:PRK02504 396 KiYLFWAGWQAGLYL-LVLVGLVTSVISIYYYIR 428
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
161-290 |
5.06e-04 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 41.56 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751415 161 QTSLRKLMAYSSINHLGWMMAALLTGENM---WSFYFSIYMFLSTSIIFL-FHSFQLFHINQNF-----LINLNPSMKFC 231
Cdd:PRK06277 287 QTDYKRLLAYHAISQGGYVAAGLALGTPLgivAGIFHAINHVIYKSALFLgAGIVSYRTKTSNLrklggLLPVMPVVAFM 366
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1861751415 232 LFFLLLSLGGLPPFLGFLPKWLVIQALTSMNYLFLSVVMIITTLLTLFYYLRLTFAAFL 290
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
|
|
| |
