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Conserved domains on  [gi|1861751389|gb|QKY68208|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Poecilimon jonicus lobulatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-316 1.86e-76

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 237.03  E-value: 1.86e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMtllL 80
Cdd:MTH00160    8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM---L 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 NQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYvMITNTFIILVVISSILIGSLGGLN 160
Cdd:MTH00160   85 FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY-LINNNFIIIIIILSAIIGAIGGLN 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 161 QTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLI-NLTPSLKFWLFFLFLSL 239
Cdd:MTH00160  164 QTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSL 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751389 240 GGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEIKWVENTTYSFSTYLILMVST 316
Cdd:MTH00160  244 GGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSF 320
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-316 1.86e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 237.03  E-value: 1.86e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMtllL 80
Cdd:MTH00160    8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM---L 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 NQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYvMITNTFIILVVISSILIGSLGGLN 160
Cdd:MTH00160   85 FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY-LINNNFIIIIIILSAIIGAIGGLN 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 161 QTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLI-NLTPSLKFWLFFLFLSL 239
Cdd:MTH00160  164 QTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSL 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751389 240 GGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEIKWVENTTYSFSTYLILMVST 316
Cdd:MTH00160  244 GGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSF 320
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-274 1.24e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 114.33  E-value: 1.24e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  17 SPTWFGAWIGLEINLLSFIPLMT-NTKNTLSTEASLKYFLVQALASSILLFSVILMH--------------LNDMTLLLN 81
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaLTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  82 QSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFVLISYVMIT-------NTFIILVVISSILI 153
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYlpsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 154 GSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENM----WLFYFSIYTFLSFSIILLFHSFQL-----FHINQNF-LIN 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtRNIRDYGgLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1861751389 224 LTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMT 274
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 25-316 8.72e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.88  E-value: 8.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  25 IGLEINLLSFIPL-MTNTKNTLSTEASLKYFLVQALASSILLFSVIL-------MHLNDMTLLLNQSLFLTLISSSLLL- 95
Cdd:COG1007   129 LGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLNLAGIAAALAAGGANSPLLLLGLVl 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  96 -------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMIT---------NTFIILVVISSILIGSLGGL 159
Cdd:COG1007   209 vlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEafpglaadwQLLLAVLAVLSMTVGNLAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 160 NQTSLRKLMAYSSINHLGWMIAALTTGENMW----LFYFSIYTFLS---FSIILLF--HSFQLFHINQ-NFLINLTPSLK 229
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNlgaFAVILLLsrKGGEAEEIEDlAGLARRSPLLA 368

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 230 FWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEikwVENTTYSFSTY 309
Cdd:COG1007   369 LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE---EAPISAPPGLR 445


                  ....*..
gi 1861751389 310 LILMVST 316
Cdd:COG1007   446 VALVIAA 452
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-316 1.27e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 1.27e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   8 IVGTLISIASPTWFGAWIGLEINLLSFIPLMT-NTKNTLSTEASLKYFLVQALASSILLFSVILM-------HLNDMTLL 79
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  80 LNQSLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMIT---------NTF 142
Cdd:TIGR01770 192 LSNGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseawQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 143 IILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENM----WLFYFSIYTFLS---FSIILLFHSFQLFH 215
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSlgaFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 216 INQ----NFLINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLf 291
Cdd:TIGR01770 352 IEYisdfAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF- 430

                         330       340
                  ....*....|....*....|....*
gi 1861751389 292 sYQEIKWVENTTYSFSTYLILMVST 316
Cdd:TIGR01770 431 -DKPERRIPSNPQSKAQSLLLSISA 454
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-316 1.86e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 237.03  E-value: 1.86e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMtllL 80
Cdd:MTH00160    8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM---L 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 NQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYvMITNTFIILVVISSILIGSLGGLN 160
Cdd:MTH00160   85 FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY-LINNNFIIIIIILSAIIGAIGGLN 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 161 QTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLI-NLTPSLKFWLFFLFLSL 239
Cdd:MTH00160  164 QTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSL 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751389 240 GGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEIKWVENTTYSFSTYLILMVST 316
Cdd:MTH00160  244 GGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSF 320
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 4-290 1.01e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 199.69  E-value: 1.01e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   4 SFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVI--LMHLNDMTLL-L 80
Cdd:MTH00105   10 YLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTITkL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 NQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVL---ISYVMITNTFIILvVISSILIGSLG 157
Cdd:MTH00105   90 TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIlyqISPSINPNLLLTL-AILSILIGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 158 GLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQ-NFLINLTPSLKFWLFFLF 236
Cdd:MTH00105  169 GLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSlSHTWNKTPLMTSLILLTL 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1861751389 237 LSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFL 290
Cdd:MTH00105  249 LSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSL 302
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 2-286 5.34e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 197.74  E-value: 5.34e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   2 LFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLN----DMT 77
Cdd:MTH00112    8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNtgqwDIT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  78 LLLNQsLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLIsyVMITN----TFIILVVISSILI 153
Cdd:MTH00112   88 QLTNP-TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL--LMTSNslnpTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 154 GSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLI-NLTPSLKFWL 232
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSwTKSPTLNTTL 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1861751389 233 FFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAF 286
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTY 298
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-287 7.40e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 187.05  E-value: 7.40e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLN----DM 76
Cdd:MTH00070    7 SILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFtgewTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  77 TLLLNQsLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYV--MITNTFIILVVISSILIG 154
Cdd:MTH00070   87 MNMQTP-LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIshLLNSNLLIIMGLLSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 155 SLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLINL-TPSLKFWLF 233
Cdd:MTH00070  166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSkNPTLTSMMM 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1861751389 234 FLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFA 287
Cdd:MTH00070  246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-305 2.40e-56

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 185.90  E-value: 2.40e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMTLLL 80
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 NQSLFLTLISSSLL---LKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYV--MITNTFIILVVISSILIGS 155
Cdd:MTH00041   87 NGPLNTLSSIIITLalaLKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsnLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 156 LGGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHI-NQNFLINLTPSLKFWLFF 234
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLsHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1861751389 235 LFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEIKWVENTTYS 305
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRN 317
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-290 4.57e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 180.00  E-value: 4.57e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   5 FTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVIL-------MHLNDMT 77
Cdd:MTH00135   11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawltgqWDIQQMS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  78 lllnQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMITN-TFIILVVISSILIGSL 156
Cdd:MTH00135   91 ----HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNpTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 157 GGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINqnfliNL------TPSLKF 230
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKIN-----TLatswtkAPALTA 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 231 WLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFL 290
Cdd:MTH00135  242 LTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTL 301
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-297 2.68e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 177.39  E-value: 2.68e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMTLLL 80
Cdd:MTH00144    7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 nqslfLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLIS---YVMITNTFIILVVISSILIGSLG 157
Cdd:MTH00144   87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSnflDLYWLAYLLCVISVLSALVGSIG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 158 GLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLINLTPSLKFWLFFLFL 237
Cdd:MTH00144  162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 238 SLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEIK 297
Cdd:MTH00144  242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK 301
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-292 4.60e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 172.08  E-value: 4.60e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   2 LFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMTLLLN 81
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGIS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  82 QSLFLTLISSSL---LLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLIS--YVMITNTFIILVVISSILIGSL 156
Cdd:MTH00200   88 EMLGPLSETLILlalALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 157 GGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQ-NFLINLTPSLKFWLFFL 235
Cdd:MTH00200  168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSlSSSKTKNPILSMLLGLT 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751389 236 FLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFS 292
Cdd:MTH00200  248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTL 304
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-315 5.36e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 168.70  E-value: 5.36e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMTLLL 80
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 nqslFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMITNTFIILVVISSILIGSLGGLN 160
Cdd:MTH00197   81 ----SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 161 QTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQ-NFLINLTPSLKFWLFFLFLSL 239
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQqYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1861751389 240 GGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEIKWVENTTYSFSTYLILMVS 315
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMM 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-292 3.52e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 166.88  E-value: 3.52e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHlndMTLLL 80
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW---SFPSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  81 NQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMITN--TFIILVVISSILIGSLGG 158
Cdd:MTH00011   86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 159 LNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLI-NLTPSLKFWLFFLFL 237
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKIsSMSQTTSMSLFIMLL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1861751389 238 SLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFS 292
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-274 1.24e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 114.33  E-value: 1.24e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  17 SPTWFGAWIGLEINLLSFIPLMT-NTKNTLSTEASLKYFLVQALASSILLFSVILMH--------------LNDMTLLLN 81
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaLTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  82 QSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFVLISYVMIT-------NTFIILVVISSILI 153
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYlpsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 154 GSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENM----WLFYFSIYTFLSFSIILLFHSFQL-----FHINQNF-LIN 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtRNIRDYGgLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1861751389 224 LTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMT 274
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 7-284 8.60e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.42  E-value: 8.60e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   7 LIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTL-STEASLKYFLVQALASSILLFSVILM-------HLNDMTL 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCALLcgttgglHLSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  79 LLNQSLFLTLISSSL---------LLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLIsyVMITNTFIILVV-- 147
Cdd:MTH00196   82 VLNSGQSFSSVSVPIgylliivalLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSIL--VSIGLNVNILLIgg 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 148 ISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGEN-------MWLFYFSIYTFLSFSIILLFHSFQLFHINQNF 220
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFesiqaslVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1861751389 221 LINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRL 284
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-284 2.12e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 102.40  E-value: 2.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   7 LIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTL-STEASLKYFLVQALASSILLFSVILMH-------LNDMTL 78
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAySTEAGLKYFVLGAVSSGLFLFGCALLYgltgetsIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  79 LLNQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMITNTFIILVVISSILIGSLGG 158
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 159 LNQTSLRKLMAYSSINHLGWMIAALTTGEN-------MWLFYFSIYTFLSFSIILLFHSFQLFHINQNFLINLTPSLKFW 231
Cdd:MTH00199  266 LNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqaslIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNPVIALT 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1861751389 232 LFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRL 284
Cdd:MTH00199  346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 25-316 8.72e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.88  E-value: 8.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  25 IGLEINLLSFIPL-MTNTKNTLSTEASLKYFLVQALASSILLFSVIL-------MHLNDMTLLLNQSLFLTLISSSLLL- 95
Cdd:COG1007   129 LGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLNLAGIAAALAAGGANSPLLLLGLVl 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  96 -------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMIT---------NTFIILVVISSILIGSLGGL 159
Cdd:COG1007   209 vlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEafpglaadwQLLLAVLAVLSMTVGNLAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 160 NQTSLRKLMAYSSINHLGWMIAALTTGENMW----LFYFSIYTFLS---FSIILLF--HSFQLFHINQ-NFLINLTPSLK 229
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNlgaFAVILLLsrKGGEAEEIEDlAGLARRSPLLA 368

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 230 FWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLFSYQEikwVENTTYSFSTY 309
Cdd:COG1007   369 LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE---EAPISAPPGLR 445


                  ....*..
gi 1861751389 310 LILMVST 316
Cdd:COG1007   446 VALVIAA 452
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-290 1.44e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.58  E-value: 1.44e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSftlIVGTLISIASPTWFGAWIGLEI-NLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVIL-------MH 72
Cdd:PRK05777  109 VLFA---LLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsLS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  73 LNDMTLLLNQSLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLI---------SY 135
Cdd:PRK05777  186 FAGIAKALADGSGNSLLLLFglvfllvgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGL 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 136 VMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENM----WLFYFSIYTFLS---FSIILL- 207
Cdd:PRK05777  266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTlgaFGVISLl 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 208 ----FHSFQLFHINQnfLINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLR 283
Cdd:PRK05777  346 rrkgGEAESISDFAG--LSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423


                  ....*..
gi 1861751389 284 LAFAAFL 290
Cdd:PRK05777  424 VIKLMYF 430
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-316 1.27e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 1.27e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   8 IVGTLISIASPTWFGAWIGLEINLLSFIPLMT-NTKNTLSTEASLKYFLVQALASSILLFSVILM-------HLNDMTLL 79
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  80 LNQSLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLISYVMIT---------NTF 142
Cdd:TIGR01770 192 LSNGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseawQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 143 IILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENM----WLFYFSIYTFLS---FSIILLFHSFQLFH 215
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSlgaFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 216 INQ----NFLINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFLf 291
Cdd:TIGR01770 352 IEYisdfAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF- 430

                         330       340
                  ....*....|....*....|....*
gi 1861751389 292 sYQEIKWVENTTYSFSTYLILMVST 316
Cdd:TIGR01770 431 -DKPERRIPSNPQSKAQSLLLSISA 454
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-284 1.82e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.90  E-value: 1.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   3 FSFTLIVGT--LISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLST---------EASLKYFLVQALASSILLF----- 66
Cdd:MTH00198  191 FALVLIVGLggLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcaly 270

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  67 -----------SVILMHLNDMTLLLNQSLF-LTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFVLIS 134
Cdd:MTH00198  271 fgftgnegmlgTILSATLETTNIELRQGSLgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLT 350

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 135 YVMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTG-----ENMWLF--YFSIYTFLSFSIILL 207
Cdd:MTH00198  351 SLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWTYavTYLVSALASFTVICT 430

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 208 FHSFQL-------------FHINQNFLINLT------PSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMG------ 262
Cdd:MTH00198  431 LEEFGTrtptsrqrdgsfgNYNLVRRLVDLTilsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAfsssls 510

                         330       340
                  ....*....|....*....|...
gi 1861751389 263 -YIFVVVIMVIMTLVTLFYYLRL 284
Cdd:MTH00198  511 iYYLVALFAIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-284 4.73e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 69.02  E-value: 4.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASPTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLN----DM 76
Cdd:COG0651   110 YPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAtgtlNM 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  77 TLLLNQSLFLTLISSSLLL---------KMGAAPFHFWFPGTM-EGLSWMNCLI--LMTwqKIAPFVLI---------SY 135
Cdd:COG0651   190 ADLAARLAELDPGLLLAAFalllvgfgiKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILrvltllfgaDP 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 136 VMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYT----------FLSF-SI 204
Cdd:COG0651   268 ALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhalakallFLAAgAI 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 205 ILLFHSFQLFHINQnfLINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRL 284
Cdd:COG0651   348 ERATGTRDLDKLGG--LGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-289 3.33e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.66  E-value: 3.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  27 LEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMTLLLNQS-----------LFLTLISSSLLL 95
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenptvvTAFGFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  96 KMGAAPFHFWFPGTM-EGLSWMNCLILMTWQKIAPFVL--ISYVMIT---------NTFIILVVISSILIGSLGGLNQTS 163
Cdd:PRK08375  215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALirIYFTVFGgdfrfalglGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 164 LRKLMAYSSINHLGWMIA--ALTTGENMW--LFY------FSIYTFLSF-SIILLFHSFQLFHINQnfLINLTPSLKFWL 232
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLglALLTPLALAagLLHllhhalMKGALFLAAgAIEVTYGTRRLSELSG--LGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751389 233 FFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAF 289
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-283 1.96e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 52.36  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  46 STEASLKYFLVQALASSILLFSVILMH----------------LNDMTLLLnqSLFLTLISSSLLLKMGAAPFHFWFPGT 109
Cdd:PRK02504  159 SNEAALKYLLIGAASSAIFLYGSSLLYglsggstqlsaialalITSPSLGL--ALALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 110 MEGLSWMNCLILMTWQKIAPFVLISYVMITN----------TFIILVVISSILiGSLGGLNQTSLRKLMAYSSINHLGWM 179
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAfpsfdeqwklLFTALAILSMVL-GNVVALAQTSMKRMLAYSSIGQAGFV 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 180 IAALTTGEN----MWLFYFSIYTFL---SFSIILLFH----SFQLfhINQNFLINLTPSLKFWLFFLFLSLGGLPPFMGF 248
Cdd:PRK02504  316 MIGLVAGTEagyaSMVFYLLAYLFMnlgAFACVILFSlrtgTDQI--SDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1861751389 249 LPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLR 283
Cdd:PRK02504  394 FGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 131-317 6.92e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 50.35  E-value: 6.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 131 VLISYVMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENMWLFYFSIYTFL-SFSIILLFH 209
Cdd:PRK12667  286 SLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINhAIAKSLLFL 365

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 210 SFQLF-------HINQ-NFLINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYY 281
Cdd:PRK12667  366 ASGVFihaagtrDIDElAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGY 445

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1861751389 282 LRLAFAAFLFSYQEIKWVENT-TYSFSTYLILMVSTT 317
Cdd:PRK12667  446 FRAWYSLFFGKPKSGEEVEHKeSPSMSVVILVLALAV 482
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
130-289 8.80e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.87  E-value: 8.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 130 FVLISYV--MITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGE----NMWLFYF-------SI 196
Cdd:PRK12663  260 FTLLFPQerELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTpagiNGAIFYLvhdmvvkTA 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 197 YTFLSFSIILLFHSFQLFHINQnfLINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLV 276
Cdd:PRK12663  340 LFLIAGSLVRLTGYRSLQYLGG--LYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLI 417

                         170
                  ....*....|...
gi 1861751389 277 TLFYYLRLAFAAF 289
Cdd:PRK12663  418 TMYSLFRIFFLAY 430
ndhB CHL00049
NADH dehydrogenase subunit 2
 46-284 9.57e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 46.92  E-value: 9.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  46 STEASLKYFLVQALASSILLFSVILMH-----------------LNDMTLLLNQSLFLTLISSSLLLKMGAAPFHFWFPG 108
Cdd:CHL00049  160 SNEATMKYLLMGGASSSILVYGFSWLYglsggeielqeivngliNTQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPD 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 109 TMEGLSWMNCLILMTWQKIAPFVL------ISYVMITNTFIILVVISSIL---IGSLGGLNQTSLRKLMAYSSINHLGWM 179
Cdd:CHL00049  240 VYEGSPTPVVAFLSVTSKVAASALatrifdIPFYFSSNEWHLLLEILAILsmiLGNLIAITQTSMKRMLAYSSIGQIGYV 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 180 IAALTTGENMW-----LFYFSIYTFL---SFSIILLFHSFQLFHINQNF--LINLTPSLKFWLFFLFLSLGGLPPFMGFL 249
Cdd:CHL00049  320 IIGIIVGDSNDgyasmITYMLFYIFMnlgTFACIVLFGLRTGTDNIRDYagLYTKDPFLALSLALCLLSLGGIPPLAGFF 399

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1861751389 250 PKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRL 284
Cdd:CHL00049  400 GKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK12650 PRK12650
DUF4040 family protein;
101-289 7.15e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.26  E-value: 7.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 101 PFHFWFPGTMEGLSWMNC-LILMTWQKIAPFVLISY------VMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSI 173
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAfLHAAAVVKAGIYLLLRFspvfhdVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 174 NHLGWMIAALTTGENMWLFYFSIYTFLSfsiiLLFHS--FQLFHINQN-----------FLINLTPSLKFWLFFLFLSLG 240
Cdd:PRK12650  306 SQLGWIVATIGVGTPFALTAAVVHTLAH----ALFKSslFMLIGVVDHqagtrdirrlgSLWRRMPFTFVSVTIAALSMA 381

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1861751389 241 GLPPFMGFLPKWLIIQAL--TEMGYIFVVVIMVIMTLVTLF---YYLRLAFAAF 289
Cdd:PRK12650  382 AVPPLFGFVSKEGMLTAFleAPGGNAGVVLLLVGAALGAVFtfaYSARLVLGAF 435
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 101-290 9.82e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.99  E-value: 9.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 101 PFHFWFPGTMEG---LS-------------WMncLILMtwqkiapFVLISYVMITNTFIILVVISSILIGSLGGLNQTSL 164
Cdd:COG1009   229 PLHFWLPDAMEGptpVSallhaatmvkagvYL--LARL-------SPLFALSPVWLTVVAIIGAITALFAALIALAQTDI 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 165 RKLMAYSSINHLGWMIAALTTGeNMWLFYFSIYT--------FLSF-SIILLFHSFQLFHINQnfLINLTPSLKFWLFFL 235
Cdd:COG1009   300 KRVLAYSTVSQLGYMFLALGVG-AYVAALFHLLThaffkallFLGAgSVIHATGTRDIRKMGG--LRKKMPITAITFLIG 376

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1861751389 236 FLSLGGLPPFMGFLPKWLIIQAL--TEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFL 290
Cdd:COG1009   377 ALSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFF 433
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-290 1.10e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 43.55  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  48 EASLKYFLVQALASSILLFSVILMH-----LN--------DMTLLLNQSLFLTLISSSLLLKMGAAPFHFWFP-GTMEGL 113
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYgqygtLNmaylavkmSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPdAYPAAP 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 114 SWMNCLILMTWQ----KIAPFVLISYVMITNT-----FIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALT 184
Cdd:PRK08376  252 SSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 185 TGenmwLFYFSIYTFLSFSIILL----FHSFQ-------LFHI-----------NQNFLINLT---PSLKFWLFFLFLSL 239
Cdd:PRK08376  332 VG----LAALGDPAMASYGEIALaggiYHIVNhalykalLFLTagaviyetgtrNLNELGGLArtmPKTTIAFLIGAAAI 407

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1861751389 240 GGLPPFMGFLPKWLIIqaltEMGYIF---VVVIMVIMTLVTLFYYLRLAFAAFL 290
Cdd:PRK08376  408 VGLPPFNGFASKWLIY----ESSALFnpiLGVIAMIGSVLTLASFVKVFHTAFF 457
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
130-316 2.22e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.71  E-value: 2.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 130 FVLISYVMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMIAALTTGENM----WLFYFSIYTFLSFSII 205
Cdd:PRK06277  256 FGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLgivaGIFHAINHVIYKSALF 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 206 LLFHSFQLFHINQNF-----LINLTPSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFY 280
Cdd:PRK06277  336 LGAGIVSYRTKTSNLrklggLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVS 415

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1861751389 281 YLRLAFAAFLFSYQEIKWVENTTYSFSTYLILMVST 316
Cdd:PRK06277  416 MMKAFYLIYLKPKPEELEYKNKKVPKYAVFSLAVLT 451
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 46-290 6.10e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.52  E-value: 6.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  46 STEASLKYFLVQALASSILLFSV--------------ILMHLNDMTLLLNQSLFLTLISSSLLLKMGAAPFHFWFPGTME 111
Cdd:PRK08668  145 SRKASLKYFVLSAIGAYAMLYAIfliyaktgtfdfadISQGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYS 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 112 ------------GLSWMNCL-------ILMTWQKIAPFVLISYVMITNTFIILVVISSILIGSLGGLNQTSLRKLMAYSS 172
Cdd:PRK08668  225 eapqsfsavlsgQLSKLGAYgfllvlyVLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSS 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 173 INHLGWMIAALTTGENM----WLFY------FSIYTFLSFSIILLFHSFQLFHiNQNFLINLTPSLKFWLFFLFLSLGGL 242
Cdd:PRK08668  305 VANGGYILVGLGLGTSLgfagGLFHvfnhalFKGLFFLIFAAVIYRTGTTKIS-EMGGLIEKMPFTFAMYLVAIISLAGI 383

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1861751389 243 PPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVTLFYYLRLAFAAFL 290
Cdd:PRK08668  384 PPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVFL 431
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-277 9.03e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.49  E-value: 9.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389   1 FLFSFTLIVGTLISIASpTWFGAWIGLEINLLSFIPLMTNTKNTLSTEASLKYFLVQALASSILLFSVILMHLNDMTLL- 79
Cdd:PRK06589  120 FFFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNLd 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389  80 --------LNQSLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLI-LMTWQKIAPFVLISYVMIT----------- 139
Cdd:PRK06589  199 fvsgglfsKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhAVIVVKTGLFCIYKILLYIfglsylqrifa 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1861751389 140 -NTFIILVVISSILIGSLGGLNQTSLRKLMAYSSINHLGWMI--AALTTGENMWLFYFSIYTFlSFSIILLFHSFQ--LF 214
Cdd:PRK06589  279 eFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVSH-SFAKICLFYSMGsiYS 357

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1861751389 215 HINQNFLINLT------PSLKFWLFFLFLSLGGLPPFMGFLPKWLIIQALTEMGYIFVVVIMVIMTLVT 277
Cdd:PRK06589  358 LKKEDQVDKLHgtsksfPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIAS 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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