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Conserved domains on  [gi|1852606426|ref|WP_174091590|]
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MULTISPECIES: DUF3801 domain-containing protein [Enterococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3801 super family cl15036
Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. ...
 20-143 6.47e-06

Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.


The actual alignment was detected with superfamily member pfam12687:

Pssm-ID: 432720  Cd Length: 132  Bit Score: 43.03  E-value: 6.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852606426  20 KVMKVLLHlssdSVLALKDRLIPLKGENNLYKLMNREDPLTSSQLHEKvNLAKLKEQLEAQGLPFAFKQN----PDGTNL 95
Cdd:pfam12687   2 KNLAALLK----ALLKKRDKKKITKGKQSLKKLLKQGKGLKVIEITDE-DLKDFKREAKKYGVDYAVKKDkstkPGKYLV 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1852606426  96 YFRVKDTELAKKALEHviTSIKKNPRMILRKP----NAKTFEERLAQLPKQR 143
Cdd:pfam12687  77 FFKAKDADAINRAFKE--FSAKPLQKEKEKKPsvrkKLEKFKERVKQTRAED 126
 
Name Accession Description Interval E-value
DUF3801 pfam12687
Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. ...
 20-143 6.47e-06

Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.


Pssm-ID: 432720  Cd Length: 132  Bit Score: 43.03  E-value: 6.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852606426  20 KVMKVLLHlssdSVLALKDRLIPLKGENNLYKLMNREDPLTSSQLHEKvNLAKLKEQLEAQGLPFAFKQN----PDGTNL 95
Cdd:pfam12687   2 KNLAALLK----ALLKKRDKKKITKGKQSLKKLLKQGKGLKVIEITDE-DLKDFKREAKKYGVDYAVKKDkstkPGKYLV 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1852606426  96 YFRVKDTELAKKALEHviTSIKKNPRMILRKP----NAKTFEERLAQLPKQR 143
Cdd:pfam12687  77 FFKAKDADAINRAFKE--FSAKPLQKEKEKKPsvrkKLEKFKERVKQTRAED 126
 
Name Accession Description Interval E-value
DUF3801 pfam12687
Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. ...
 20-143 6.47e-06

Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.


Pssm-ID: 432720  Cd Length: 132  Bit Score: 43.03  E-value: 6.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852606426  20 KVMKVLLHlssdSVLALKDRLIPLKGENNLYKLMNREDPLTSSQLHEKvNLAKLKEQLEAQGLPFAFKQN----PDGTNL 95
Cdd:pfam12687   2 KNLAALLK----ALLKKRDKKKITKGKQSLKKLLKQGKGLKVIEITDE-DLKDFKREAKKYGVDYAVKKDkstkPGKYLV 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1852606426  96 YFRVKDTELAKKALEHviTSIKKNPRMILRKP----NAKTFEERLAQLPKQR 143
Cdd:pfam12687  77 FFKAKDADAINRAFKE--FSAKPLQKEKEKKPsvrkKLEKFKERVKQTRAED 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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