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Conserved domains on  [gi|1850793520|gb|QKJ82520|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Malacomys edwardsi]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 15-115 3.05e-61

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 182.83  E-value: 3.05e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00106   15 SLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLL 94

                          90       100
                  ....*....|....*....|.
gi 1850793520  95 VTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00106   95 ISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 15-115 3.05e-61

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 182.83  E-value: 3.05e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00106   15 SLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLL 94

                          90       100
                  ....*....|....*....|.
gi 1850793520  95 VTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00106   95 ISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 5.30e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 102.89  E-value: 5.30e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  18 VLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNITSM-LTLAFILVT 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1850793520  97 ILSLGLIYEWTQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 15-113 8.09e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.17  E-value: 8.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNI-TSMLTLAFI 93
Cdd:COG0838    20 LAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLIEMLV 97

                          90       100
                  ....*....|....*....|
gi 1850793520  94 LVTILSLGLIYEWTQKGLEW 113
Cdd:COG0838    98 FIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 15-115 3.05e-61

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 182.83  E-value: 3.05e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00106   15 SLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLL 94

                          90       100
                  ....*....|....*....|.
gi 1850793520  95 VTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00106   95 ISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 15-115 9.51e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 143.52  E-value: 9.51e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00136   16 LILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAV 95

                          90       100
                  ....*....|....*....|.
gi 1850793520  95 VTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00136   96 LILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 15-115 1.76e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 137.82  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00069   14 LILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLI 93

                          90       100
                  ....*....|....*....|.
gi 1850793520  95 VTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00069   94 LILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 15-114 1.81e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 130.00  E-value: 1.81e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00113   15 TILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATII 94

                          90       100
                  ....*....|....*....|
gi 1850793520  95 VTILSLGLIYEWTQKGLEWT 114
Cdd:MTH00113   95 LTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 15-115 1.74e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 120.09  E-value: 1.74e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00042   16 SLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIF 95

                          90       100
                  ....*....|....*....|.
gi 1850793520  95 VTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00042   96 LIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 15-113 5.23e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 111.14  E-value: 5.23e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMltLAFIL 94
Cdd:MTH00203   16 LILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLL--LAFLF 93

                          90
                  ....*....|....*....
gi 1850793520  95 VTILSLGLIYEWTQKGLEW 113
Cdd:MTH00203   94 LILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 5.30e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 102.89  E-value: 5.30e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  18 VLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNITSM-LTLAFILVT 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1850793520  97 ILSLGLIYEWTQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 15-115 2.53e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 99.55  E-value: 2.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLY-TEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFI 93
Cdd:MTH00148   16 PVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFI 95

                          90       100
                  ....*....|....*....|..
gi 1850793520  94 LVTILSLGLIYEWTQKGLEWTE 115
Cdd:MTH00148   96 FLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 3.70e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 93.69  E-value: 3.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFILVTILSLGLIYEWTQKGL 111
Cdd:MTH00161   32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                  ..
gi 1850793520 112 EW 113
Cdd:MTH00161  112 EW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 32-113 2.06e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 91.98  E-value: 2.06e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFILVTILSLGLIYEWTQKGL 111
Cdd:MTH00202   34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSL 113


                  ..
gi 1850793520 112 EW 113
Cdd:MTH00202  114 DW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 1.49e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 84.91  E-value: 1.49e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFILVTILSLGLIYEWTQKGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ...
gi 1850793520 112 EWT 114
Cdd:MTH00012  114 DWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 15-113 8.09e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.17  E-value: 8.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNI-TSMLTLAFI 93
Cdd:COG0838    20 LAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLIEMLV 97

                          90       100
                  ....*....|....*....|
gi 1850793520  94 LVTILSLGLIYEWTQKGLEW 113
Cdd:COG0838    98 FIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-113 2.66e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 78.98  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  31 TEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFILVtILSLGLIYEWTQKG 110
Cdd:MTH00055   36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGG 114


                  ...
gi 1850793520 111 LEW 113
Cdd:MTH00055  115 LEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 15-114 2.41e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 74.13  E-value: 2.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTlAFIL 94
Cdd:PRK06602   23 ILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVE-AMIF 101

                          90       100
                  ....*....|....*....|
gi 1850793520  95 VTILSLGLIYEWTQKGLEWT 114
Cdd:PRK06602  102 ILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 1.26e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 72.02  E-value: 1.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNITSM-LTLAFILVTILSLGLIYEWTQKG 110
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFgFWTMVGFLFILTLGLIYEWIKGG 109


                  ...
gi 1850793520 111 LEW 113
Cdd:MTH00018  110 LEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 9.90e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 67.65  E-value: 9.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  31 TEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLtLAFILVTILSLGLIYEWTQKG 110
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFW-IVYTFLIVLAIGLAYEWIKGG 119


                  ...
gi 1850793520 111 LEW 113
Cdd:MTH00030  120 LEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 3.72e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.14  E-value: 3.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  33 KANPYECGFDPTSSARLP--FSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFILVTIlSLGLIYEWTQKG 110
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTV-FVAYAYVWRRGG 115


                  ....
gi 1850793520 111 LEWT 114
Cdd:PRK07928  116 LEWD 119
ndhC CHL00022
NADH dehydrogenase subunit 3
 32-114 6.79e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 52.30  E-value: 6.79e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNI-TSMLTLAFILVTILSLGLIYEWTQKG 110
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLgVSAFIEALIFVLILIVGLVYAWRKGA 116


                  ....
gi 1850793520 111 LEWT 114
Cdd:CHL00022  117 LEWS 120
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 3.63e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.51  E-value: 3.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAIQTTNITSM-LTLAFILVTILSLGLIYEWTQKG 110
Cdd:PRK07756   41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFaLIEMLIFVVMLLVGLAYAWKKKV 118


                  ...
gi 1850793520 111 LEW 113
Cdd:PRK07756  119 LQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 6.95e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.66  E-value: 6.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  33 KANPYECGFDPTSSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAIQtTNITSMLTLA--FILVTILSLGLIYEWTQKG 110
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVD-FKLLGLFGLIemLLFIVLLTIGFIYAWKKGA 122


                  ...
gi 1850793520 111 LEW 113
Cdd:PRK08489  123 LEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 15-114 1.45e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 37.95  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850793520  15 LILVLIAFWLPHMNLYTEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNITSMLTLAFIL 94
Cdd:MTH00092   16 MLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSSLISFFMLMIFIF 95

                          90       100
                  ....*....|....*....|
gi 1850793520  95 VtilslGLIYEWTQKGLEWT 114
Cdd:MTH00092   96 F-----GFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-76 1.14e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 35.64  E-value: 1.14e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1850793520  36 PYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   40 SFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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