NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18447860|emb|CAD22040|]
View 

cytochrome b, partial (mitochondrion) [Hapalemur griseus occidentalis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-119 6.81e-89

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 262.27  E-value: 6.81e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 6.81e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 262.27  E-value: 6.81e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-119 3.51e-53

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 165.23  E-value: 3.51e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860   1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 18447860  81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 6.34e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.08  E-value: 6.34e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860     1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 18447860    81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:pfam00033  87 YGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-119 4.67e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 155.33  E-value: 4.67e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860   1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 18447860  81 YGSFT----LseTWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:COG1290 113 YGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 6.81e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 262.27  E-value: 6.81e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00119
cytochrome b; Provisional
 1-119 3.93e-80

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 239.80  E-value: 3.93e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00156
cytochrome b; Provisional
 1-119 4.65e-77

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 231.21  E-value: 4.65e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00156  14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00156  94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00074
cytochrome b; Provisional
 1-119 9.22e-76

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 228.80  E-value: 9.22e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00074  25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00074 105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00131
cytochrome b; Provisional
 1-119 1.75e-75

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 228.00  E-value: 1.75e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00131 104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00191
cytochrome b; Provisional
 1-119 3.20e-73

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 221.71  E-value: 3.20e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00191  21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00191 101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00145
cytochrome b; Provisional
 1-119 4.31e-70

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 214.00  E-value: 4.31e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00145  25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00145 105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00034
cytochrome b; Validated
 1-119 4.53e-69

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 211.49  E-value: 4.53e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00034  24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00034 104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00016
cytochrome b; Validated
 1-119 8.22e-67

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 205.68  E-value: 8.22e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00016  25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00016 105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 1-119 1.17e-60

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 189.91  E-value: 1.17e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00022 103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00224
cytochrome b; Provisional
 1-119 2.53e-59

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 186.67  E-value: 2.53e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00224 105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00053
cytochrome b; Provisional
 1-118 1.43e-57

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 182.21  E-value: 1.43e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:MTH00053 105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-119 3.51e-53

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 165.23  E-value: 3.51e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860   1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 18447860  81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 6.34e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.08  E-value: 6.34e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860     1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 18447860    81 YGSF--TLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:pfam00033  87 YGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
CYTB MTH00033
cytochrome b; Provisional
 1-119 2.05e-48

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 158.56  E-value: 2.05e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00033 101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-119 4.67e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 155.33  E-value: 4.67e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860   1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 18447860  81 YGSFT----LseTWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:COG1290 113 YGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
CYTB MTH00086
cytochrome b; Provisional
 1-119 8.85e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 140.46  E-value: 8.85e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    1 PSNMSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLY 80
Cdd:MTH00086  13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 18447860   81 YGSFTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:MTH00086  93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 4-118 1.09e-29

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 108.92  E-value: 1.09e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    4 MSAWWNCGSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLYYGS 83
Cdd:MTH00046  18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 18447860   84 FTLSETWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:MTH00046  98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 4-118 1.99e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 87.46  E-value: 1.99e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860    4 MSAWWNC-GSLLGACLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLYYG 82
Cdd:PRK03735  37 FSAFVYCfGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTG 116

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 18447860   83 SFTLSE--TWNIGIILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:PRK03735 117 GYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 17-118 2.94e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 70.91  E-value: 2.94e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18447860   17 CLALQIITGLFLAMHYTADTMTAFSSVTHICRDVNHGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLSE--TWNIGI 94
Cdd:CHL00070  43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122

                         90       100
                 ....*....|....*....|....
gi 18447860   95 ILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:CHL00070 123 VLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
65-119 5.71e-11

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 56.10  E-value: 5.71e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18447860    65 SMFFLCLFIHIGRGLYYGSFTLSE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWG 119
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH